mRNA_E_fasciculatus_S2_contig8313.16457.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8313.16457.1
Unique NamemRNA_E_fasciculatus_S2_contig8313.16457.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI7_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 1.080e-84
Identity = 158/192 (82.29%), Postives = 158/192 (82.29%), Query Frame = 1
Query:   70 AGKREDG-YVDDDAASLSPLGEGIPLGGGGTAAAAVGAGNPTATSSG---------RRVRSSRKALSPAPAPPVPPVAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 615
            AGKREDG     DA SLSPLGEGIPLGGG TAA                       RR RSSRKALSPAP  PVP VAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR
Sbjct:  359 AGKREDGGXXXXDAGSLSPLGEGIPLGGG-TAAXXXXXXXXXXXXXXXXXXXXXXXRRTRSSRKALSPAPPVPVP-VAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 548          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K923_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 2.410e-72
Identity = 137/184 (74.46%), Postives = 139/184 (75.54%), Query Frame = 1
Query:   64 EGAGKREDGYVDDDAASLSPLGEGIPLGGGGTAAAAVGAGNPTATSSGRRVRSSRKALSPAPAPPVPPVAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 615
            EGAGKREDG  DD + SL PLGEGIPLGGG                                      V GIEKAKRAP+RFYLVREGHRFVPVGRNPKKGAWKELPEVAIP ARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR
Sbjct:  528 EGAGKREDGCGDDGSDSLPPLGEGIPLGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXVVGIEKAKRAPVRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPTARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 708          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Chloride (channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU91_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-16
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  295 APIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCV 612
            A +RF +V+ G +  PV     +G    +  +    + ++IP+V+DPSP QV+H+TEL K+D  FR+L+LD A+VC AG+LVG +TR  +  FV  RE  P+D+C+
Sbjct:  631 AHLRFVVVKGGGKVAPVVDT--RGTAYCMQHMLRLTSIDTIPIVMDPSPLQVAHSTELRKLDYMFRMLKLDIAFVCRAGKLVGWVTRGTIRRFVGAREPQPIDECI 734          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKC7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-13
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  301 IRFYLVREGHRFVPV---GRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCV 612
            ++F +   G + VPV    R+P        P +++P         LD SPYQV  T  LSKVD+ FR+L++++AYV  AGRL+GVITR+ L + + D+E  P+D C+
Sbjct:   79 VQFIIYDNGTKPVPVMGTRRSPNNLLTGYSPLLSVP---------LDTSPYQVLDTMHLSKVDLIFRMLKVNHAYVTRAGRLIGVITRQRLREHLGDKEKRPIDSCL 176          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Chloride (channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UA92_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.960e-13
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  418 PVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 615
            P+++DPSPYQV   T LSKVD +FR+L++  AYV  +GRL+GV+TR++L +FV  RE  PM  C++
Sbjct:  845 PLIMDPSPYQVGDRTLLSKVDFSFRMLKVTQAYVVRSGRLLGVLTRDSLTEFVGTREKKPMHRCLQ 910          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUG0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.790e-12
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  415 IPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMD 603
            I V LDPSPYQ+  +  LSKVD+ FRLL L+ AYV N+GRLVGV+TR  L D++      P D
Sbjct:   94 IAVPLDPSPYQIVDSMHLSKVDMVFRLLSLNQAYVTNSGRLVGVVTRSLLRDYLGGHRKKPTD 156          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VIZ2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.340e-10
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  301 IRFYLVRE-GHRFVPVG----------------RNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDC 609
            I++ L+ + G+ F+PV                 RN +  +W  +          S  V +DPSPYQ+  T +L+KV++ FR+L+L+ AYV   GR+VG+ITR  + ++V      P ++C
Sbjct:  190 IQYVLISDDGNSFIPVASTSAVASSHTPSNKRLRNNRLSSWAAM----------SYAVAIDPSPYQIVDTMQLNKVNVIFRMLKLNQAYVTRNGRVVGIITRSIMREYVSKYVKKPAENC 299          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAK7_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-8
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  406 RESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFV 576
            R  + V++DPSP+Q+   T + +VD+ FR+L+L+NAY+  +GRLVG+ITR+ L  F+
Sbjct:  769 RTKLTVLIDPSPFQLMEMTPMKRVDLLFRMLKLNNAYITRSGRLVGLITRDRLMTFL 825          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNS7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.260e-8
Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  292 RAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDC 609
            +A +RF ++  G R VPV  +  +     L      A+  +I V+LD SPYQ+  T +L+KVD+ FR L+++ AYV  +G LVGV+TR  L   +      PMD C
Sbjct:  849 QAVLRF-VINHGGRAVPVATSSTQTNLSPLF-----ASCPNISVLLDTSPYQILDTMDLAKVDLIFRTLKVNQAYVTCSGVLVGVVTRARLRKVLAQDAKEPMDRC 948          
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Glyco_transf_28 (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2U2_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 4.330e-8
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  406 RESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFV 576
            R  + V+++PSP+Q+   T + +VD+ FR+L+L+NAY+  +GRLVGVITR+ L  F+
Sbjct: 1384 RTKLTVLINPSPFQLMEMTPMKRVDLLFRMLKLNNAYITRSGRLVGVITRDRLMTFL 1440          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
Uncharacterized1.080e-8482.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.410e-7274.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Chloride1.340e-1642.45channel n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.610e-1340.19protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Chloride3.960e-1353.03channel protein n=2 Tax=Monodopsidaceae TaxID=4250... [more]
Hypothetical8.790e-1255.56protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Hypothetical9.340e-1031.67protein (Fragment) n=1 Tax=Chromulina nebulosa Tax... [more]
Uncharacterized2.200e-847.37protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical2.260e-838.68protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Glyco_transf_284.330e-847.37domain-containing protein n=1 Tax=Pythium insidios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8313contigE_fasciculatus_S2_contig8313:4933..6131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score278.1
Seed ortholog evalue3.3e-72
Seed eggNOG ortholog2880.D8LJI7
Model size615
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0008150,GO:0008308,GO:0008509,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015698,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0034220,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0098660,GO:0098661,GO:1902476
Exons2
EggNOG free text desc.voltage-gated chloride channel activity
EggNOG OGsCOG0038@1,KOG0476@2759
Cds size615
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.659497-CDS-E_fasciculatus_S2_contig8313:4932..53791696842491.659497-CDS-E_fasciculatus_S2_contig8313:4932..5379Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8313 4933..5379 +
1696842491.6737103-CDS-E_fasciculatus_S2_contig8313:5963..61311696842491.6737103-CDS-E_fasciculatus_S2_contig8313:5963..6131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8313 5964..6131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8313.16457.1prot_E_fasciculatus_S2_contig8313.16457.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8313 4933..6131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8313.16457.1

>prot_E_fasciculatus_S2_contig8313.16457.1 ID=prot_E_fasciculatus_S2_contig8313.16457.1|Name=mRNA_E_fasciculatus_S2_contig8313.16457.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=205bp
MDEGRSGATPPPPPPPPPPGVEGAGKREDGYVDDDAASLSPLGEGIPLGG
GGTAAAAVGAGNPTATSSGRRVRSSRKALSPAPAPPVPPVAGIEKAKRAP
IRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQV
SHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPM
DDCVR
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mRNA from alignment at E_fasciculatus_S2_contig8313:4933..6131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8313.16457.1 ID=mRNA_E_fasciculatus_S2_contig8313.16457.1|Name=mRNA_E_fasciculatus_S2_contig8313.16457.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1199bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8313:4933..6131+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGAAGGACGAAGCGGAGCAACGCCTCCTCCTCCTCCGCCGCCGCC GCCGCCCGGGGTCGAGGGGGCAGGCAAACGGGAAGACGGCTACGTTGACG ACGATGCCGCTTCTCTCTCCCCTCTCGGCGAAGGCATCCCCCTAGGCGGT GGCGGCACGGCCGCGGCGGCAGTCGGAGCAGGCAACCCCACAGCCACTAG TAGTGGCAGGAGAGTCCGTTCCTCCCGGAAGGCGCTGTCGCCGGCGCCGG CGCCACCGGTGCCGCCGGTGGCGGGGATCGAGAAGGCGAAGCGGGCGCCC ATCCGCTTCTACCTGGTGAGGGAGGGGCACAGGTTCGTGCCGGTCGGGCG TAACCCCAAGAAGGGCGCGTGGAAGGAGCTGCCGGAGGTGGCGATTCCCG CCGCCCGCGAGAGCATTCCGGTGGTGCTGGACCCTTCGCCCTACCAGGTG CGGTGGTGGGGGGGGGGGGGAGGGAGGAGGGTTTGGGCGACCACGGGGGG GCGTTGCATGTCATGTAGTTTCGTGGGGACGGCGTCTCTCTCTGCATCTC TCTTTCTTTCTCTCTCTCTGCGTCTCTCTCTACGTCTCTCTTCCTCTACT TTCCCTGACTGTCTTGTGTGTTTGCCCCCCACCCCTCTCTCTCTTCATCT CTGTCTGTCTCTGTGCCTGGCGAGTGGTGCCAACGTCGGCGGCCACCCCG TCGGCCTGGATATTTATTAGCAAGTGCTTGTTTCGCTTTTCCAAGCAGCC TCTGCAAGAGCCATAGATGGCTCTGTGTTCTTTTTTGGTAGACCCCCGCC GTAGACCCCGATGGCGTGCTTGATGCATATCTATGAGATCCCGCTCAGCT GGATGGGCGGCAATAATTCCTAGCCGACTTTCGGCTGGACGGAGAGGGAT AATTCCGCACCATGCATTTGTACCAACCGCGAGATACCTACCATGCCTTC TTGTTGAGATCTAGACAAGAGCTCCAAGGTACACGTCCACCCTAATGAAG AACGAACCATGACCCCCCGCCCCCACGTTAGGTTTCCCACACGACGGAAC TTTCCAAGGTTGACATAGCGTTCCGGCTGCTGAGGCTGGACAACGCGTAC GTCTGCAACGCCGGGCGGCTGGTCGGGGTGATCACCCGGGAGGCCCTGGC CGACTTCGTCGACGATCGCGAGGTTTCCCCTATGGACGACTGCGTGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8313:4933..6131+

>mRNA_E_fasciculatus_S2_contig8313.16457.1 ID=mRNA_E_fasciculatus_S2_contig8313.16457.1|Name=mRNA_E_fasciculatus_S2_contig8313.16457.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=615bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8313:4933..6131+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGAAGGACGAAGCGGAGCAACGCCTCCTCCTCCTCCGCCGCCGCC
GCCGCCCGGGGTCGAGGGGGCAGGCAAACGGGAAGACGGCTACGTTGACG
ACGATGCCGCTTCTCTCTCCCCTCTCGGCGAAGGCATCCCCCTAGGCGGT
GGCGGCACGGCCGCGGCGGCAGTCGGAGCAGGCAACCCCACAGCCACTAG
TAGTGGCAGGAGAGTCCGTTCCTCCCGGAAGGCGCTGTCGCCGGCGCCGG
CGCCACCGGTGCCGCCGGTGGCGGGGATCGAGAAGGCGAAGCGGGCGCCC
ATCCGCTTCTACCTGGTGAGGGAGGGGCACAGGTTCGTGCCGGTCGGGCG
TAACCCCAAGAAGGGCGCGTGGAAGGAGCTGCCGGAGGTGGCGATTCCCG
CCGCCCGCGAGAGCATTCCGGTGGTGCTGGACCCTTCGCCCTACCAGGTT
TCCCACACGACGGAACTTTCCAAGGTTGACATAGCGTTCCGGCTGCTGAG
GCTGGACAACGCGTACGTCTGCAACGCCGGGCGGCTGGTCGGGGTGATCA
CCCGGGAGGCCCTGGCCGACTTCGTCGACGATCGCGAGGTTTCCCCTATG
GACGACTGCGTGCGG
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