mRNA_E_fasciculatus_S2_contig831.16455.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig831.16455.1
Unique NamemRNA_E_fasciculatus_S2_contig831.16455.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 6.600e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 2 
Query:   95 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 304
            MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.860e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:   95 MSTGYRSSKGVLITCDVPTKQFIMSLDARLA--CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVR 295
            MS    S KGVLITCDVPTKQFI+ L+++ A   +++DLD TH+FV+  +V EI+ +LE+L E NVYVR
Sbjct:    1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 57.4 bits (137), Expect = 2.060e-7
Identity = 26/67 (38.81%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  113 SSKGVLITCDVPTKQFIMSLD-----ARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRP 298
            ++ G L+TCDVPTK+F++ L+      + A ++ +LD TH+ VK+D V+ +Q +++  + KNVY  P
Sbjct:    4 ATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HXU1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.650e-7
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:  113 SSKGVLITCDVPTKQFIMSLDARLAC----VVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 289
            +S G LITCDVPTKQ+I  L+   A     ++ DLDATH+ VKK +  EI+R +E   ++NV+
Sbjct:   36 ASAGYLITCDVPTKQYIQYLNEMKAVDKKFIIEDLDATHLLVKKKARAEIERRVESWMDENVF 98
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 2.840e-7
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:   77 TRLRCAMSTGYRSSKGVLITCDVPTKQFIMSLDARLA--CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 289
            TR +  M T   ++ GVLI+CD+P KQF++ +D +     ++SDLD THV VK+ ++  I+ +L++L+E+N Y
Sbjct:   41 TRTQSEMVT---ATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQY 110
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 56.6 bits (135), Expect = 3.470e-7
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:  119 KGVLITCDVPTKQFIMSLDARLA---CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 289
            +GVLITCD+P KQFI+ LD   A    V+++LD T +F++  ++K +Q +LE+L+E+N +
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2U2_COCSC)

HSP 1 Score: 53.1 bits (126), Expect = 6.560e-6
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 2 
Query:  119 KGVLITCDVPTKQFIMSLD----ARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 301
            +GVL+ CDVPTK+FI+SL+         V+ DLD T +FV+   V+ +++ L++ +E+N Y  PR
Sbjct:    2 RGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEENTYQPPR 66
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-5
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2 
Query:  113 SSKGVLITCDVPTKQFIMSLDARLA---CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 289
            ++ GVL+TCDVP KQF++ LD   A    +V+ LD TH+F+   +V  I+ +LE+L  +N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65
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BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7H4_OSTLU)

HSP 1 Score: 50.8 bits (120), Expect = 4.910e-5
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 2 
Query:  122 GVLITCDVPTKQFIMSLD----ARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRP 298
            GV+IT DVP KQ+I+ L+    A    VV DLDA  V V+ D+V  I RE+E   +   YV P
Sbjct:    7 GVMITADVPIKQYILHLNDVAPAERKFVVVDLDARRVLVQPDAVDAIHREIEAFQQSTQYVAP 69
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Match: General (transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3U5_PHATC)

HSP 1 Score: 51.6 bits (122), Expect = 5.980e-5
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 2 
Query:   65 RAPSTRLRCAMSTGYRSSKGVLITCDVPTKQFIMSLD----ARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 289
            R+P  R +         S G L++CDVPTKQFI  L+         ++ DLDATH+ V+  +  EI+R++E+  + NV+
Sbjct:   20 RSPRHRPKIHNDDDLPPSAGYLVSCDVPTKQFIQHLNDLKPVDKKFILQDLDATHLLVELKARDEIRRKVEEWEDSNVF 98
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig831.16455.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
General6.600e-39100.00transcription and DNA repair factor IIH subunit TF... [more]
General3.860e-1456.52transcription and DNA repair factor IIH subunit TF... [more]
General2.060e-738.81transcription and DNA repair factor IIH subunit TF... [more]
General2.650e-747.62transcription and DNA repair factor IIH subunit TF... [more]
General2.840e-741.10transcription and DNA repair factor IIH subunit TF... [more]
General3.470e-745.00transcription and DNA repair factor IIH subunit TF... [more]
General6.560e-641.54transcription and DNA repair factor IIH subunit TF... [more]
General1.630e-543.55transcription and DNA repair factor IIH subunit TF... [more]
General4.910e-546.03transcription and DNA repair factor IIH subunit TF... [more]
General5.980e-536.71transcription and DNA repair factor IIH subunit TF... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig831contigE_fasciculatus_S2_contig831:13638..16098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size821
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.4838622-UTR-E_fasciculatus_S2_contig831:13637..137311696842491.4838622-UTR-E_fasciculatus_S2_contig831:13637..13731Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig831 13638..13731 +
1696842491.524641-UTR-E_fasciculatus_S2_contig831:15584..160981696842491.524641-UTR-E_fasciculatus_S2_contig831:15584..16098Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig831 15585..16098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.4940667-CDS-E_fasciculatus_S2_contig831:13731..137751696842491.4940667-CDS-E_fasciculatus_S2_contig831:13731..13775Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig831 13732..13775 +
1696842491.503605-CDS-E_fasciculatus_S2_contig831:15052..151661696842491.503605-CDS-E_fasciculatus_S2_contig831:15052..15166Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig831 15053..15166 +
1696842491.5135648-CDS-E_fasciculatus_S2_contig831:15529..155841696842491.5135648-CDS-E_fasciculatus_S2_contig831:15529..15584Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig831 15530..15584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig831.16455.1prot_E_fasciculatus_S2_contig831.16455.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig831 13732..15584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig831.16455.1

>prot_E_fasciculatus_S2_contig831.16455.1 ID=prot_E_fasciculatus_S2_contig831.16455.1|Name=mRNA_E_fasciculatus_S2_contig831.16455.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=71bp
MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVK
EIQRELEQLHEKNVYVRPRT*
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mRNA from alignment at E_fasciculatus_S2_contig831:13638..16098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig831.16455.1 ID=mRNA_E_fasciculatus_S2_contig831.16455.1|Name=mRNA_E_fasciculatus_S2_contig831.16455.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2461bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig831:13638..16098+ (Ectocarpus fasciculatus EfasUO2)
GGCAAGCACAAAAAATCCGACAGTCCCGGAAGCAACCAACAACATCCGAG
CACTGACTGAGTACCGAGCACCGAGCACACGGCTGCGTTGTGCGATGAGC
ACAGGATACCGGAGCAGCAAAGGCGTTCTCATCACCTGGTACGGTACGGA
AAGGGAACTGGTCTGTTGCATGCCCTGAGTCGAAGCCTGCCCCAATCATA
GCAGCTTGTCAAGTGATCGCATAGTGGGTCGACTGATGTACATGTACCGT
CCGTAGACTGCTGTAGACAACAGTGTCTAGACGGTGTAGTGCATTAGAGT
ACTGCTACATCAACAGCCTTGTTCTTTCACTGGTAGTTCTATTGCTACTG
TACCGAACTGCCAATGTGGCTCAACATTGCGGGCTACGATACTGACGCTG
GTCATGCCGTTTGTTGCTTAAGATACCACCCCCCTTGGGACCGGTTTACT
CTATGTATGCATACCTACCGGAATACACGTAGCGCAGCCACGTTCAGCAG
CGACGTCGCCGCGGCGGCTTGGGCACCGTCTCGTCGAAAGCTTTCCAAAA
ACGTGCCCTTCGACGGTGGCATCCTCTTCCGTTGTGGAGTAATTGAGCTT
TGGAAAATCTGTCACGGGGGTGTTGCATCTTGTGCAACCTACATCAGGAT
GAACAAAGTTCATTTCTGTATTTGAAACCATGGGCGCCCGTGTTACGGCC
TATTGCATTATTAGGAAAAATTGCATGTAGGGAATGCAGAGAGCGGTGCT
GTTGTTTAACGCGTGTATTTACGCATGCGCGTGAAGTCCACAGGTTGGAA
ATTTGCTGAACTCCTCTTAGAGATGCACATGCGAAGCAGCGGAGCATGTA
GTAATTGGCGGTCTTCTCTTGCAGGCACAGTAGCAGTGGTGATGGCGTTC
CAGAAATGTTTTTTTTTTTCACGGTGACAAACAATTCGCTTTGGCACCTC
AAGGGGGAACCCGCCGTCTACAAAAACATGGCCCAGAACATTGTCGTGGG
GTTGATCTATTTCGCCGCTCTCGTTGTCTTCCCTCCATCGTCGTCGTTCT
CTTGTGCTTGGCATTGCCCGATATAACGTGGTGTTTCACTGTATGTAGCT
GCGCATGTACCATGTAGCTGCGCATGTACCCTGTTTACGTTTTCCCTCTC
AGGCAAAATCAAGGGCAGGGTAGAATCCATTCTATGTCTTTTGAAGAGTC
CGAACTCGTTTTTGTTCAAGTTTTCGGCGCTCGATATCGCTATGATGACT
GGTATTATTCCCCCGCCTCCGCCCCTTCCTACCCAGCGCTGTCCCTCGTT
TTGATGTTCGTGTTGGGTGTTCTGACGCGAAAACGATGGCTGTGTGGACT
TTCGCCGTTTTCGTTGGAGTTGATAACCAACCATGTTGCTTTATTTGTCC
CCTTGTTGTATCCAGCGATGTGCCCACGAAGCAGTTCATTATGAGCCTGG
ACGCACGGCTGGCGTGCGTGGTGTCGGACCTGGACGCCACACATGTCTTC
GTCAAGAAAGACAGCGTCAAAGAGATACAGTGAGTGCTATCCTGCCCACC
TGGTTGTCTGTACAAGTTTGGCAGGAATCACCTTGTAGGAGAAGGCGCGT
GCGTGTGTCGAGCTCTGAAATGAGTTGTTTCAGTTCTATGTTTGCTTTTT
GTATTGTTTTAGAGAAAGCGATGCCGATGTTACGGACTGCGCCGTGGTTG
CACTGTATGTAGTGGGTGTCCTTATCCATATTGTCCAGAAGTTACGCTAC
ATACAATTTATTGCGGAGTGAGTTGTGGACGTGTGCAAGGGGTAAAAGGG
ACATATTATATTTCGGCCGCGGTGATGCTCGCTTTGGGTATACCTAGCCA
TCAACGACCATTCGCCGCATTCCATGCCTCATCCGTTTTCAGGCGCGAGC
TGGAACAGCTGCACGAGAAAAACGTTTACGTGCGGCCTCGAACATAGATA
GCAACAGCGGCGGTACGCAGTAGTGCGCAACAGGAAGCAGAAAGACGGCA
CCGGCACGACGTCTGCAGGGTCGTTGTACTCACCACGCGGACGTTTCATT
TCGCGTGGCAGAGAGCAGGAAAACTGGCGAAGAGAGGGCGGCTTTCAATT
TTTTTTTGTTGGAGCAAGCAGTGTTGAAGGGACGTTGCAGGAGGAAGTCG
TGCAGCTTACTGAGAGGGGGGTTCGCGATCTCTACTGTGCTCGCACTGCT
GTCTGTGTGATCGGCGGTAGTGTGTCTCTGTTCGGATTTCACACCTGGAC
GAGCTATGTCTTGCTTCGACGAGTTTGCAAGCCCCGTACCGTTGATAAGG
TGATGGTACCTCGTTGAAGAAGGGCATTACAGCAGTGTAGTAAAGCGTAC
AATCAATAGGACCGTGCCCAGTTGCACGCAGCATCTCGCAACCATCGTGG
CCATGTGGTGTGGAGATACGTATTGTGGAGGATTGAGACACCCTTGTCAC
TGTAGCATCAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig831:13638..16098+

>mRNA_E_fasciculatus_S2_contig831.16455.1 ID=mRNA_E_fasciculatus_S2_contig831.16455.1|Name=mRNA_E_fasciculatus_S2_contig831.16455.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig831:13638..16098+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCACAGGATACCGGAGCAGCAAAGGCGTTCTCATCACCTGCGATGT
GCCCACGAAGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGG
TGTCGGACCTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAA
GAGATACAGCGCGAGCTGGAACAGCTGCACGAGAAAAACGTTTACGTGCG
GCCTCGAACATAG
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