mRNA_E_fasciculatus_S2_contig8306.16453.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8306.16453.1
Unique NamemRNA_E_fasciculatus_S2_contig8306.16453.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.580e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   19 QENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            +ENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV
Sbjct:   19 KENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 63
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ43_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 5.340e-15
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    7 LHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            L  C+EN+L +T+R LQAES V LNT+D+++N +SDINHGRW+AV+PQV
Sbjct:   36 LQFCKENHLHQTMRTLQAESQVSLNTVDSMENFLSDINHGRWDAVLPQV 84
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.520e-15
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   19 QENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            +E+NLT +L+ LQ+ES VCL+T+DNLDNL SDINHGRWE+V+PQV
Sbjct:   19 KEHNLTSSLKTLQSESKVCLDTVDNLDNLSSDINHGRWESVLPQV 63
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TVT7_9SPIT)

HSP 1 Score: 65.9 bits (159), Expect = 1.330e-12
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    7 LHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            L  C+EN L +TL+A+Q ES V LNT+D++D L+SDINHGRW+ V+  V
Sbjct:   41 LQFCKENGLHRTLQAMQEESRVALNTVDSIDGLLSDINHGRWDVVLQTV 89
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RYM9_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 2.350e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   19 QENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            +ENNL +TL ALQ ESSV  NT+DN DNL+ DINHGRW+AV+ QV
Sbjct:   20 RENNLERTLGALQKESSVTFNTVDNKDNLLQDINHGRWDAVLRQV 64
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: Uncharacterized (protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BEX1_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 8.100e-12
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VSLHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            + L  C+EN LT++  ALQ E  V LNT+D+++N +SDIN+GRW+AV+PQV
Sbjct:   13 IILQFCKENGLTESFNALQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FYG8_GONPE)

HSP 1 Score: 66.6 bits (161), Expect = 9.290e-12
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VSLHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            + L  C+EN LT++   +Q E  V LNT+D+++N +SDINHGRW+AV+PQV
Sbjct:   78 IILQFCKENGLTESFNVIQNECQVSLNTVDSVENFVSDINHGRWDAVLPQV 128
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8HPU4_CHLRE)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-11
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VSLHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            + L  C+EN LT +  A+Q E  V LNT+D++DNL++DIN+GRW+AV+PQV
Sbjct:   13 IILQFCKENGLTDSFNAIQNECQVSLNTVDSVDNLVADINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=3 Tax=Volvox TaxID=3066 RepID=D8U0F1_VOLCA)

HSP 1 Score: 65.5 bits (158), Expect = 3.910e-11
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VSLHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            + L  C+EN LT++  A+Q E  V LNT+D+++N +SDIN+GRW+AV+PQV
Sbjct:   13 IILQFCKENGLTESFNAIQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0Q1_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 3.910e-11
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 VSLHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 153
            + L  C+EN LT++  A+Q E  V LNT+D+++N +SDIN+GRW+AV+PQV
Sbjct:   13 IILQFCKENGLTESFNAIQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8306.16453.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
WD404.580e-2197.78repeat-containing protein SMU1 n=2 Tax=Ectocarpus ... [more]
Hypothetical5.340e-1563.27protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
WD408.520e-1571.11repeat-containing protein SMU1 n=1 Tax=Tribonema m... [more]
Hypothetical1.330e-1257.14protein (Fragment) n=1 Tax=Strombidinopsis acumina... [more]
Uncharacterized2.350e-1268.89protein n=1 Tax=Mucor circinatus TaxID=2054153 Rep... [more]
Uncharacterized8.100e-1254.90protein n=4 Tax=Volvox africanus TaxID=51714 RepID... [more]
Uncharacterized9.290e-1252.94protein n=1 Tax=Gonium pectorale TaxID=33097 RepID... [more]
WD401.530e-1154.90repeat-containing protein SMU1 n=3 Tax=Chlamydomon... [more]
WD403.910e-1152.94repeat-containing protein SMU1 n=3 Tax=Volvox TaxI... [more]
WD403.910e-1152.94repeat-containing protein SMU1 n=1 Tax=Edaphochlam... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8306contigE_fasciculatus_S2_contig8306:144..296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.4
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D7FX60
Preferred nameSMU1
Model size153
KEGG koko:K13111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
Exons1
EggNOG free text desc.regulation of alternative mRNA splicing, via spliceosome
EggNOG OGsKOG0275@1,KOG0275@2759
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.2152436-CDS-E_fasciculatus_S2_contig8306:143..2961696842491.2152436-CDS-E_fasciculatus_S2_contig8306:143..296Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8306 144..296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8306.16453.1prot_E_fasciculatus_S2_contig8306.16453.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8306 144..296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8306.16453.1

>prot_E_fasciculatus_S2_contig8306.16453.1 ID=prot_E_fasciculatus_S2_contig8306.16453.1|Name=mRNA_E_fasciculatus_S2_contig8306.16453.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=51bp
VSLHSCQENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQ
V
back to top

mRNA from alignment at E_fasciculatus_S2_contig8306:144..296-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8306.16453.1 ID=mRNA_E_fasciculatus_S2_contig8306.16453.1|Name=mRNA_E_fasciculatus_S2_contig8306.16453.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=153bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8306:144..296- (Ectocarpus fasciculatus EfasUO2)
GTTTCGCTGCATTCATGCCAGGAGAACAACCTGACCAAGACGCTCAGAGC
TCTCCAGGCGGAGTCTAGCGTGTGTCTCAACACCATCGACAACCTGGACA
ACCTCATGAGCGACATCAACCACGGGCGTTGGGAGGCGGTCATGCCTCAG
GTA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8306:144..296-

>mRNA_E_fasciculatus_S2_contig8306.16453.1 ID=mRNA_E_fasciculatus_S2_contig8306.16453.1|Name=mRNA_E_fasciculatus_S2_contig8306.16453.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=153bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8306:144..296- (Ectocarpus fasciculatus EfasUO2)
GTTTCGCTGCATTCATGCCAGGAGAACAACCTGACCAAGACGCTCAGAGC
TCTCCAGGCGGAGTCTAGCGTGTGTCTCAACACCATCGACAACCTGGACA
ACCTCATGAGCGACATCAACCACGGGCGTTGGGAGGCGGTCATGCCTCAG
GTA
back to top