mRNA_E_fasciculatus_S2_contig8304.16452.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI) HSP 1 Score: 320 bits (820), Expect = 6.630e-107 Identity = 152/158 (96.20%), Postives = 155/158 (98.10%), Query Frame = 1
Query: 223 KYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHR 696
+YEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAA AIL ARRALCIKPMWRDELT+LTGYKLE+ISDCGEDLW FYEKMFPLHR
Sbjct: 126 RYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCIKPMWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHR 283
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA) HSP 1 Score: 305 bits (781), Expect = 9.180e-102 Identity = 147/229 (64.19%), Postives = 171/229 (74.67%), Query Frame = 1
Query: 31 EPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRPLRTDAS 717
+P A Y HRRYMVDWISE+GE+L L VTIHSA+SFLD++ Y + W L A+CCLS+AAKYEEAE NMPM+SE+A A E LTT +VT+GEL L + L WD+SRVTAMHFLGYY QGVT D CQGR LV KV YM KYV+FFANLCQQ Y FQR++PS IAA +ILAARRALCI P+WR EL LTG DI C E++W+FYE MFP H+PLRT S
Sbjct: 4 DPSATYIPHRRYMVDWISEIGEELKLQPVTIHSAISFLDQVCTTQGYDPKGWRLQAICCLSVAAKYEEAERNMPMVSEMAIAAETRLTTGMVTQGELSLARG-LGWDISRVTAMHFLGYYLHQGVTFLSDECQGRALVTKVTRYMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCIAPLWRPELERLTGCAPRDIQACAEEVWAFYEAMFPTHQPLRTSGS 231
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTM7_THAPS) HSP 1 Score: 202 bits (515), Expect = 2.080e-60 Identity = 100/223 (44.84%), Postives = 144/223 (64.57%), Query Frame = 1
Query: 34 PPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
P + Y +RRY+VDW+S+VGEQ L T T+H + +LD++ + W L A CLS+AAKYEEAE + P I +L T++S TS+ R GE+ +++N L W + + +H +GYY S+G T DD QGR L+EK+ Y+ KY +FF NL Q Y FQ+Y P+H+AA +LA+R AL I P WR EL ELTG++ ++I + + +WS+YE+ FP H
Sbjct: 85 PTSSYIPYRRYLVDWMSDVGEQCSLHTSTVHCGILYLDKIFREREVPRGSWQLLATACLSVAAKYEEAEEHCPHIPDLLRLTKLSSVGHTSLSFREGEVQVLRN-LGWKLRAIPPLHVIGYYLSKGATFVDDAWQGRSLIEKIPKYIKKYAEFFCNLTLQEYSFQQYLPTHLAAAILLASREALQISPRWRPELEELTGFEEKEIGEAFQHVWSYYEEQFPGH 306
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BY09_9STRA) HSP 1 Score: 202 bits (514), Expect = 9.340e-60 Identity = 101/223 (45.29%), Postives = 144/223 (64.57%), Query Frame = 1
Query: 34 PPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
P A Y +RRY+VDW+S+VGEQ L T+H ++ FLD++ D W L A CLS+AAKYEEAE + P I EL T++S TS+ R GEL+++++ L W + + +H +GY+ ++G T DDT QGR L+EK+ Y+ KY +FF NL Q Y FQ+Y P H+A +LA+R AL ++P WR EL LTGY+ +I+D + +WS+YE+ FP H
Sbjct: 127 PGASYLPYRRYLVDWMSDVGEQCRLHNTTVHVSILFLDKVFRSRDIPRSQWQLLATACLSVAAKYEEAEEHCPPIPELLQLTKLSSAGHTSLSFREGELEILRH-LGWRLRAIPPLHVIGYFLAKGTTFEDDTWQGRALIEKIPKYVKKYAEFFCNLTLQEYAFQQYLPVHLATAILLASRVALQLQPRWRPELARLTGYEEAEITDVFQHVWSYYEEQFPGH 348
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXT2_TRICV) HSP 1 Score: 198 bits (503), Expect = 7.030e-59 Identity = 100/226 (44.25%), Postives = 144/226 (63.72%), Query Frame = 1
Query: 25 TAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEM--SLTTSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
T P + Y +RRY+VDW+S+VGEQ L T+H ++ +LD++ + W L A C+S+AAKYEEAE + P I EL T++ S T++ R GEL ++Q+ L W + + +H +GYY S+G T DDT QGR L+EK+ Y+ KYV+FF NL Q Y FQ+Y P+H+AA +LA+R AL ++P WR EL +TGY+ +I D +W +YE+ FP H
Sbjct: 59 TYSPNSSYLPYRRYLVDWMSDVGEQCRLHNTTVHVSILYLDKMFRSRNIPRNQWQLLATACISVAAKYEEAEEHCPPIPELLQLTKLCNSGHTALSFREGELAVLQH-LGWRLRAIPPLHIVGYYLSKGATFEDDTWQGRALIEKIPKYVKKYVEFFCNLTLQEYSFQQYLPTHLAAAILLASRVALQLEPRWRPELARVTGYEDHEIVDVFTHVWRYYEEQFPGH 283
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin-like (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL21_9STRA) HSP 1 Score: 194 bits (494), Expect = 3.730e-58 Identity = 101/221 (45.70%), Postives = 138/221 (62.44%), Query Frame = 1
Query: 40 AEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
A Y +RRY+VDW+S+VGEQ L T+H + FLD++ + W L A C+S+AAKYEEAE + P I EL T++ T + R GEL++++ L W + V +H +GY+ ++G +DT QGR L+EK+ YM KY DFF NL Q Y FQ+Y PSH+AA ILA+R AL I+P WR EL LTGY +I+D +WS+YE+ FP H
Sbjct: 18 AAYLPYRRYLVDWMSDVGEQCRLHNSTVHVGILFLDKIFRSRNIPRGQWQLLATACISVAAKYEEAEEHCPPIPELLRLTKLGNAGHTPLSFRDGELEVLRY-LNWQLRAVPPIHVVGYFLAKGAVFYEDTWQGRSLIEKIPKYMKKYADFFCNLTLQEYSFQQYLPSHLAAAVILASRVALNIEPRWRPELVRLTGYSEIEITDAFHHVWSYYEEQFPGH 237
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M1N0_9STRA) HSP 1 Score: 196 bits (498), Expect = 6.800e-58 Identity = 100/226 (44.25%), Postives = 143/226 (63.27%), Query Frame = 1
Query: 25 TAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
T P A Y +RRY+VDW+S+VGEQ L T T+H ++ FLD++ + W L A CLS+AAKYEEAE + P I +L T++S S+ R GE+++++ L W + V +H +GY+ S+G T DDT QGR L++K+ Y+ KY +FF NL Q Y FQ+Y P+H+AA ILA+R +L I P WR EL LTGY ++I + +W++YE+ FP H
Sbjct: 80 TYAPQASYIPYRRYLVDWMSDVGEQFHLHTSTVHVSILFLDKIFRTREIPRSHWQLLATACLSVAAKYEEAEEHCPAIPDLLKLTKLSNVGHNSLSFRDGEVEVLKY-LGWKLRAVPPIHVVGYFLSKGATFEDDTWQGRALIDKIPKYVKKYAEFFCNLTLQEYSFQQYLPTHLAAAIILASRVSLQITPQWRPELQLLTGYSEDEIKGAFKHVWAYYEEQFPGH 304
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9W8_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.010e-57 Identity = 99/223 (44.39%), Postives = 143/223 (64.13%), Query Frame = 1
Query: 34 PPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
P A + +RRY+VDW+S+VGEQ L T T+H +V +LD++ W L A CLSIAAKYEEAE + P I +L T+++ S+ R GE+ ++++ L W + A+H +GYY S+G DDT QGR L+EK+ Y+ KY +FF NL Q Y+FQ+Y P+ +AA +LA+R AL ++P WR EL +LTGY+ E+I D +W++YE+ FP H
Sbjct: 110 PEAAFLPYRRYLVDWLSDVGEQFRLHTSTVHVSVLYLDKIFRSVSIPRNQWQLVATACLSIAAKYEEAEEHCPPIPDLLSLTKLASAGHNSLTFREGEVQVLKH-LGWRLRAFPAIHVIGYYLSKGACFEDDTWQGRGLIEKIPRYVKKYAEFFCNLTLQDYEFQQYLPTQLAAAILLASRVALQLEPRWRPELVQLTGYEEEEIVDIFHHVWAYYEEQFPGH 331
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (N-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL28_THAOC) HSP 1 Score: 199 bits (507), Expect = 3.060e-56 Identity = 103/227 (45.37%), Postives = 141/227 (62.11%), Query Frame = 1
Query: 22 KTAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
+T P A Y +RRY+VDW+S+VGEQ +L T T+H + FLD++ + W L A CLSIAAKYEEAE + P I +L T++ TS+ R GE+++++N L W + V +H +GY+ S+G DD+ Q R L++K+ Y+ KY DFF NL Q Y FQ+Y PSH+AA +LA+R AL I P WR EL LTGY I D +WS+YE+ FP H
Sbjct: 389 QTYVPHASYIPYRRYLVDWMSDVGEQCNLHTSTVHVGILFLDKIFRSREVPRNHWQLVATACLSIAAKYEEAEEHCPPIPDLLQLTKLHSAGHTSLTFREGEVEVLRN-LGWKLRAVPPLHVIGYFLSKGAVFHDDSWQSRSLIDKIPKYIKKYADFFCNLTLQEYSFQKYLPSHLAAAILLASRVALQITPRWRPELEALTGYSEAGIEDVFNHVWSYYEEQFPGH 614
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z377_9STRA) HSP 1 Score: 190 bits (482), Expect = 2.000e-55 Identity = 96/221 (43.44%), Postives = 139/221 (62.90%), Query Frame = 1
Query: 40 AEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSL---TTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
A Y +RRY+VDW+S+VGEQ L T+H A+ FLD++ + W L A C+S+AAKYEEAE + P I +L T++ T GEL++++ L+W + + +H +GY+ ++GVT DD+ QGR L+EK+ Y+ KY +FF NL Q Y FQ+Y P+ + A ILA+R AL I+P W+ EL ELTGY +I+D +WS+YE+ FP H
Sbjct: 91 ASYLPYRRYLVDWMSDVGEQCRLHNSTVHVAILFLDKIFRSRNIPRGQWQLLATACISVAAKYEEAEEHCPPIPDLLRLTKLGNAGHTPLSFREGELEVLRY-LKWQLRAIPPIHVVGYFLAKGVTFTDDSWQGRALIEKIPRYVKKYAEFFCNLTLQEYAFQQYLPTLLGAAIILASRVALNIEPRWKPELMELTGYNEVEITDAFHRVWSYYEEQFPGH 310 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8304.16452.1 >prot_E_fasciculatus_S2_contig8304.16452.1 ID=prot_E_fasciculatus_S2_contig8304.16452.1|Name=mRNA_E_fasciculatus_S2_contig8304.16452.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=259bp MAKTAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTback to top mRNA from alignment at E_fasciculatus_S2_contig8304:778..5523+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8304.16452.1 ID=mRNA_E_fasciculatus_S2_contig8304.16452.1|Name=mRNA_E_fasciculatus_S2_contig8304.16452.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4746bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8304:778..5523+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8304:778..5523+ >mRNA_E_fasciculatus_S2_contig8304.16452.1 ID=mRNA_E_fasciculatus_S2_contig8304.16452.1|Name=mRNA_E_fasciculatus_S2_contig8304.16452.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=777bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8304:778..5523+ (Ectocarpus fasciculatus EfasUO2)back to top |