mRNA_E_fasciculatus_S2_contig8302.16450.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8302.16450.1
Unique NamemRNA_E_fasciculatus_S2_contig8302.16450.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8302.16450.1 vs.
Match: Vps54_N (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.900e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   76 RDVPWAVIKVRSETEIIRCLDPRFFVEDFDPITKI 180
            + VPWAVIKVRSETEIIRCLDPRFFVE    + ++
Sbjct:   22 KQVPWAVIKVRSETEIIRCLDPRFFVEGEKDVARL 56
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8302.16450.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Vps54_N1.900e-771.43domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8302contigE_fasciculatus_S2_contig8302:4411..5742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 54
Ec32 orthologEc-09_001680.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842490.9392064-CDS-E_fasciculatus_S2_contig8302:4410..44911696842490.9392064-CDS-E_fasciculatus_S2_contig8302:4410..4491Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8302 4411..4491 +
1696842490.95071-CDS-E_fasciculatus_S2_contig8302:5216..52921696842490.95071-CDS-E_fasciculatus_S2_contig8302:5216..5292Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8302 5217..5292 +
1696842490.960007-CDS-E_fasciculatus_S2_contig8302:5640..57411696842490.960007-CDS-E_fasciculatus_S2_contig8302:5640..5741Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8302 5641..5741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8302.16450.1prot_E_fasciculatus_S2_contig8302.16450.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8302 4411..5741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8302.16450.1

>prot_E_fasciculatus_S2_contig8302.16450.1 ID=prot_E_fasciculatus_S2_contig8302.16450.1|Name=mRNA_E_fasciculatus_S2_contig8302.16450.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
AVSAPLQQLARVSTDAGDGDDSDSDRDVPWAVIKVRSETEIIRCLDPRFF
VEDFDPITKILDDLPDLGHSSLSLSAAGEAGGLGGK
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mRNA from alignment at E_fasciculatus_S2_contig8302:4411..5742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8302.16450.1 ID=mRNA_E_fasciculatus_S2_contig8302.16450.1|Name=mRNA_E_fasciculatus_S2_contig8302.16450.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1332bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8302:4411..5742+ (Ectocarpus fasciculatus EfasUO2)
GCGGTTTCGGCCCCGCTGCAGCAGCTCGCGAGAGTGTCGACAGACGCCGG
CGACGGCGACGATAGCGACAGCGACAGAGACGTGAGTCGTGAGTCGTGGC
GTCCGCGGTGTATGCCCGGGCCGGGCCGGCCGGCCGCGGGCGGGGGGTAC
TCGTGTTATTTGTCTTCATGAGAATGTTATGCTTGGTCTTAGCAGGTGGG
GTTGGGGGTAAGGGTTAAGGATGTGAAACGCCCCCTCTCTATTTCATACC
GAAGTAGATTTTACAATCACATCATCGTGAAGTCGGACAAGTCGTTGGGC
CTCGTATGCCGAGACGGAGCGATGTTCCGGGTTTTCGCCGGCCCAGGCTA
TCACGTTTCACAAGGAGAGGCCAGAAGCTGATTGTCATTGTCCTTCCGTT
TGCTGTGTCAAACCAGAGCCCGCCGGAAGGGGGGGGAGGTGGGTTCGGTT
TGTTTTCGCCAACGGGGATGTTTGAAGCGGACATCTCGTCTGTTTTGTCT
TCCTCTGTTTCAGTCCCACACGCGGAGTGTGAGTTACCGCTCTGTCCGGA
AATATACGGACCATGGGGACAATCACGTTACGATGTATCCGAAGGGTCCT
TGTACTTGCGAACAAAAGCGGTACTCCTTAAGATGATGAGCATGCCTACG
AAAATTGAGTATTCCGCACGCTTTAAGGCCAGGGAACACTCGCTCCAGCA
CGGTTCCATGACGACTCGGGGCGTAGTTTGTTTTTCTCAAGATGAACCAG
CCACCACTGCGGTCGTGTAAGCAGCTCGTGTTGTTCCGGTTGGTTGCCGA
AAGCAGGTTCCGTGGGCGGTGATCAAGGTCCGCTCTGAGACCGAGATCAT
CAGGTGCTTGGACCCACGCTTCTTCGTTGAAGGTAACGAGGTTTAGCCTA
GCTTGTCGACATCGTTGGTGTAGTTGTTGAAAAAATTGTTGATAATATAG
TGCTACTGCTGCTGCTGCTGCTGCCGCTCCAGTTGCCGATAGATGGCCAT
TGCTTGTGATACAATAGTGGTGCTGGTGGCGTGCATACTTTGTTGGGTGT
GTTGCGCTGGATGCCTCTGTTGGCGGTGTCATCACAACATGGGTGACGCT
GGTTTTCCCCGTGTGTTGTGCTGTTTGTGTCTTTGCTCGTTGATTTTTCC
GCCGCCCCCGCCCCCGCCGTTGCTTTCTGCTTCCGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCAGACTTCGACCCGATTACGAAG
ATCCTCGACGACCTGCCGGACTTAGGACACTCCTCTCTCTCGCTCTCCGC
CGCTGGCGAGGCAGGCGGGCTGGGCGGGAAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8302:4411..5742+

>mRNA_E_fasciculatus_S2_contig8302.16450.1 ID=mRNA_E_fasciculatus_S2_contig8302.16450.1|Name=mRNA_E_fasciculatus_S2_contig8302.16450.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8302:4411..5742+ (Ectocarpus fasciculatus EfasUO2)
GCGGTTTCGGCCCCGCTGCAGCAGCTCGCGAGAGTGTCGACAGACGCCGG
CGACGGCGACGATAGCGACAGCGACAGAGACGTTCCGTGGGCGGTGATCA
AGGTCCGCTCTGAGACCGAGATCATCAGGTGCTTGGACCCACGCTTCTTC
GTTGAAGACTTCGACCCGATTACGAAGATCCTCGACGACCTGCCGGACTT
AGGACACTCCTCTCTCTCGCTCTCCGCCGCTGGCGAGGCAGGCGGGCTGG
GCGGGAAG
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