mRNA_E_fasciculatus_S2_contig83.16447.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU74_ECTSI) HSP 1 Score: 288 bits (737), Expect = 4.100e-95 Identity = 154/192 (80.21%), Postives = 158/192 (82.29%), Query Frame = 1
Query: 1 MISSAMSSASLIGRPVHVAANRLRTTSXXXXXXXXXXXXXXXXTALPSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE 576
MISSA SSA LIGR V VAA RLRT++ PSFEYKVQST+DPK RKTC TCGFVNYENPKVICGSVLTAKGG ADG D FYVLGRR+IQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGAN L DNA SFSAGQETDE
Sbjct: 1 MISSARSSAVLIGRRVQVAAKRLRTSTAAAARPS------------PSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGG--ADGKDDFYVLGRRSIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANDTLADNAHSFSAGQETDE 178
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: Nudix (hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS4_9PHAE) HSP 1 Score: 215 bits (547), Expect = 5.850e-67 Identity = 109/123 (88.62%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 220 ENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDEASAI 588
ENPKVICGSVLTAKGG ADG D FYVLGRR+IQPRRG WGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQM+YSSEL+DTQGAN L +NA SFSAGQETDEASA+
Sbjct: 12 ENPKVICGSVLTAKGG--ADGTDDFYVLGRRSIQPRRGLWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMMYSSELRDTQGANDILANNAHSFSAGQETDEASAV 132
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RKT5_9PROT) HSP 1 Score: 128 bits (322), Expect = 3.790e-34 Identity = 60/126 (47.62%), Postives = 91/126 (72.22%), Query Frame = 1
Query: 139 PSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQG 516
PSF+ +V +D + RK C CGF++Y+NPK++CGSV T+ DG +L +R I+PR+GFW +PAG++ELGE+ E+GA REAREE A++ + +LAVYS+P IGQ+Q+++ +EL + +G
Sbjct: 9 PSFQKEVPDGDDRE-RKVCTRCGFIDYQNPKIVCGSVATSP--------DGRILLCKRAIEPRKGFWTLPAGYMELGESVEDGARREAREEALAELKLDRILAVYSIPRIGQVQIMFRAELLNPEG 125
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317E013_9PROT) HSP 1 Score: 128 bits (322), Expect = 3.900e-34 Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 130 TALPSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANG 525
TA P F + +D + R C TCGFVNY NPK++ G+V+T +DG ++L RR I+PRRGFW IPAGF+E GE+ EGAAREAREE AD+ + LLAVYS+P I Q+QMI+ + L + A G
Sbjct: 2 TAGPDFHATIPEGDDRE-RDVCRTCGFVNYVNPKIVVGAVVT---------HDGRFLLARRAIEPRRGFWTIPAGFMEEGESVAEGAAREAREEACADIAIDALLAVYSIPRISQVQMIHRAALARPEFAAG 123
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: ADP-ribose (pyrophosphatase n=2 Tax=Hoeflea TaxID=274591 RepID=A9CU30_HOEPD) HSP 1 Score: 127 bits (320), Expect = 6.760e-34 Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = 1
Query: 172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE 576
D R CATCGFVNY+NP+++ GSV+ ++G +L RR I+PRRGFW +PAG+LEL ET E+GA REAREE A + +G LLAVYS+PH+ Q+Q+I+ +EL D GA AL F G+E+ E
Sbjct: 15 DTHERDVCATCGFVNYQNPRIVVGSVVR---------HEGKVLLCRRAIEPRRGFWTVPAGYLELNETPEDGARREAREEALAHLKLGELLAVYSVPHLSQVQLIWRAELMDP-GAGAAL------FGIGEESLE 133
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: ADP-ribose (pyrophosphatase YjhB (NUDIX family) n=3 Tax=Hoeflea TaxID=274591 RepID=A0A286I9T0_9HYPH) HSP 1 Score: 127 bits (319), Expect = 1.230e-33 Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 1
Query: 172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE 576
D R+ CATCGFV+Y+NP+++ GSV+ + G +L RR I+PRRGFW +PAG+LEL ET E+GA REAREE A + +G LLA+YS+PH+ Q+Q+IY +EL D GA AL F G+E+ E
Sbjct: 24 DTHEREVCATCGFVDYQNPRIVVGSVVR---------HGGKVLLCRRAIEPRRGFWTVPAGYLELNETPEDGARREAREEALAQLKLGELLAIYSVPHLSQVQLIYRAELLDP-GAGAAL------FGVGEESLE 142
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Hoeflea olei TaxID=1480615 RepID=A0A1C1YZS3_9HYPH) HSP 1 Score: 126 bits (317), Expect = 1.910e-33 Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 166 TEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE 576
T D R C TCGFVNY+NP+++ GSV+ + G +L RR I+PRRGFW +PAG+LEL ET E+GA REAREE AD+ +G LLA+YS+PH+ Q+Q+I+ +EL +T G AL F AG+E+ E
Sbjct: 13 TGDTHERDVCRTCGFVNYQNPRIVVGSVVR---------HAGKVLLCRRAIEPRRGFWTVPAGYLELHETPEDGARREAREEALADLALGELLAIYSVPHLSQVQLIWRAEL-NTPGTGTAL------FGAGEESLE 133
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G551_9PROT) HSP 1 Score: 126 bits (316), Expect = 3.200e-33 Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE 576
D + R TC CGF+NYENPK++ G+V T +G +L RR I+PRRGFW IPAG++EL ET E GAAREA+EE AD+D+ GL+ VY++P I Q+Q+IY + L+ F+AG ET+E
Sbjct: 19 DNRERLTCPDCGFINYENPKIVVGAVCTW---------EGKLLLCRRAIEPRRGFWTIPAGYMELNETAEAGAAREAKEEACADIDIDGLIGVYTIPRISQVQLIYRAVLRGGY------------FAAGDETEE 132
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Aurantimonas sp. HBX-1 TaxID=2906072 RepID=UPI001F38B021) HSP 1 Score: 125 bits (314), Expect = 7.550e-33 Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 139 PSFEYKVQSTEDPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANG 525
PSF + +D RK C CGFV YENPK++ GSV+ +DG +L RR I+PRRGFW IPAG+LEL ET EEGA REAREE A +D+ LLAVYS+P I Q+Q+IY + L + A G
Sbjct: 4 PSFSLRAPEDDDLP-RKICDNCGFVAYENPKIVVGSVVR---------HDGRILLCRRAIEPRRGFWTIPAGYLELNETPEEGARREAREEATAVLDIERLLAVYSVPRISQVQLIYRARLAEPSIAAG 122
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Match: NUDIX (domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NSW3_9PROT) HSP 1 Score: 125 bits (313), Expect = 9.030e-33 Identity = 64/135 (47.41%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 172 DPKLRKTCATCGFVNYENPKVICGSVLTAKGGEEADGNDGFYVLGRRNIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANGALVDNAKSFSAGQETDE 576
D + R TC CGF+NYENPK++ G+V T D +L RR I PRRGFW IPAGF+EL ET E G REA+EE AD+D+ GL+ VY++P I Q+Q+IY + +KD F+AG ET+E
Sbjct: 19 DNRERLTCPDCGFINYENPKIVVGAVCTW---------DSRLLLCRRAIDPRRGFWTIPAGFMELNETAEAGTRREAKEEACADIDIDGLIGVYTIPRISQVQLIYRATVKDGV------------FAAGDETEE 132 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig83.16447.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig83.16447.1 >prot_E_fasciculatus_S2_contig83.16447.1 ID=prot_E_fasciculatus_S2_contig83.16447.1|Name=mRNA_E_fasciculatus_S2_contig83.16447.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=197bp MISSAMSSASLIGRPVHVAANRLRTTSTATAAAAAAAATAAAATALPSFEback to top mRNA from alignment at E_fasciculatus_S2_contig83:43296..47671- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig83.16447.1 ID=mRNA_E_fasciculatus_S2_contig83.16447.1|Name=mRNA_E_fasciculatus_S2_contig83.16447.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4376bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:43296..47671- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig83:43296..47671- >mRNA_E_fasciculatus_S2_contig83.16447.1 ID=mRNA_E_fasciculatus_S2_contig83.16447.1|Name=mRNA_E_fasciculatus_S2_contig83.16447.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=591bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:43296..47671- (Ectocarpus fasciculatus EfasUO2)back to top |