mRNA_E_fasciculatus_S2_contig83.16446.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig83.16446.1
Unique NamemRNA_E_fasciculatus_S2_contig83.16446.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig83.16446.1 vs.
Match: NUDIX (hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU74_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 7.110e-80
Identity = 123/139 (88.49%), Postives = 126/139 (90.65%), Query Frame = 1 
Query:    1 VISVRWEDIPWDTLAFPTTSWALWHHRLRVEKAATRPIISSSSGPSLGAGEGTRRGFSGGDTAVSAMAKAVAEDDRVVGTRTDHSVPGISDTRGGTGVGVAFGAIAGTVFSVPSANSSLFWRPDVGLHQKEGWNVSTDS 417
            V  VRWEDIPWDTLAFPTTSWALWHHRLRVE+AATR II SSSG  LG GEGTRRGFSGGDTAVSA AKAV +DDRVVGTRTDHS PG+SDT G TGVGVAFGAIAGTVFSVPS NSSLFWRPDVGLHQKEGWNVSTDS
Sbjct:  179 VFGVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGEGTRRGFSGGDTAVSAGAKAVVDDDRVVGTRTDHSEPGVSDTMG-TGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNVSTDS 316
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BLAST of mRNA_E_fasciculatus_S2_contig83.16446.1 vs.
Match: Nudix (hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS4_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 6.170e-78
Identity = 118/139 (84.89%), Postives = 125/139 (89.93%), Query Frame = 1 
Query:    1 VISVRWEDIPWDTLAFPTTSWALWHHRLRVEKAATRPIISSSSGPSLGAGEGTRRGFSGGDTAVSAMAKAVAEDDRVVGTRTDHSVPGISDTRGGTGVGVAFGAIAGTVFSVPSANSSLFWRPDVGLHQKEGWNVSTDS 417
            VISVRWEDIPWDTLAFPTTSWALWHHRLRVE+AATR  I SSSG  LG GEG +RGFSGGDTA+SA+AKAV +DDRVVGT+TDH  PG+SDT G TGVGVAFGAIAGTVFSVPS NSSLFWRPDVGLHQKEGWN STDS
Sbjct:  132 VISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSTIGSSSGAPLGTGEGRKRGFSGGDTAISAVAKAVGDDDRVVGTKTDHCEPGVSDTIG-TGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNASTDS 269
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig83.16446.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
NUDIX7.110e-8088.49hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Nudix6.170e-7884.89hydrolase domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig83contigE_fasciculatus_S2_contig83:42381..42800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score248.8
Seed ortholog evalue1.5e-63
Seed eggNOG ortholog2880.D8LU74
Model size420
KEGG rclassRC00002
KEGG koko:K18453
KEGG ReactionR00160,R01054
KEGG Pathwayko00230,ko00740,ko01100,map00230,map00740,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0003824,GO:0004551,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008152,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022857,GO:0022890,GO:0030001,GO:0032879,GO:0034220,GO:0034641,GO:0042221,GO:0042592,GO:0042726,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046873,GO:0046915,GO:0047884,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071704,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564
Exons1
EggNOG free text desc.NAD diphosphatase activity
EggNOG OGsCOG2816@1,KOG3084@2759
EC3.6.1.13,3.6.1.18
Cds size420
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842490.5724423-CDS-E_fasciculatus_S2_contig83:42380..428001696842490.5724423-CDS-E_fasciculatus_S2_contig83:42380..42800Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig83 42381..42800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig83.16446.1prot_E_fasciculatus_S2_contig83.16446.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig83 42381..42800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig83.16446.1

>prot_E_fasciculatus_S2_contig83.16446.1 ID=prot_E_fasciculatus_S2_contig83.16446.1|Name=mRNA_E_fasciculatus_S2_contig83.16446.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
VISVRWEDIPWDTLAFPTTSWALWHHRLRVEKAATRPIISSSSGPSLGAG
EGTRRGFSGGDTAVSAMAKAVAEDDRVVGTRTDHSVPGISDTRGGTGVGV
AFGAIAGTVFSVPSANSSLFWRPDVGLHQKEGWNVSTDS*
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mRNA from alignment at E_fasciculatus_S2_contig83:42381..42800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig83.16446.1 ID=mRNA_E_fasciculatus_S2_contig83.16446.1|Name=mRNA_E_fasciculatus_S2_contig83.16446.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:42381..42800- (Ectocarpus fasciculatus EfasUO2)
GTAATCTCCGTTCGATGGGAAGATATTCCGTGGGATACCCTTGCCTTTCC
CACCACATCGTGGGCGCTGTGGCATCACCGTCTCAGGGTCGAAAAGGCCG
CCACGAGGCCAATCATTAGCTCATCTTCAGGGCCATCGTTGGGTGCGGGT
GAGGGCACAAGGAGAGGCTTCTCAGGAGGAGATACCGCTGTTTCAGCTAT
GGCGAAGGCTGTTGCTGAAGATGACCGTGTCGTGGGCACAAGGACGGATC
ACTCTGTGCCCGGGATCTCTGATACAAGGGGTGGAACCGGGGTCGGAGTC
GCGTTCGGGGCTATTGCGGGGACGGTATTCTCTGTGCCATCGGCGAACAG
CTCGCTTTTCTGGCGCCCCGACGTAGGGCTGCACCAAAAGGAGGGTTGGA
ACGTTTCCACCGACTCGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig83:42381..42800-

>mRNA_E_fasciculatus_S2_contig83.16446.1 ID=mRNA_E_fasciculatus_S2_contig83.16446.1|Name=mRNA_E_fasciculatus_S2_contig83.16446.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:42381..42800- (Ectocarpus fasciculatus EfasUO2)
GTAATCTCCGTTCGATGGGAAGATATTCCGTGGGATACCCTTGCCTTTCC
CACCACATCGTGGGCGCTGTGGCATCACCGTCTCAGGGTCGAAAAGGCCG
CCACGAGGCCAATCATTAGCTCATCTTCAGGGCCATCGTTGGGTGCGGGT
GAGGGCACAAGGAGAGGCTTCTCAGGAGGAGATACCGCTGTTTCAGCTAT
GGCGAAGGCTGTTGCTGAAGATGACCGTGTCGTGGGCACAAGGACGGATC
ACTCTGTGCCCGGGATCTCTGATACAAGGGGTGGAACCGGGGTCGGAGTC
GCGTTCGGGGCTATTGCGGGGACGGTATTCTCTGTGCCATCGGCGAACAG
CTCGCTTTTCTGGCGCCCCGACGTAGGGCTGCACCAAAAGGAGGGTTGGA
ACGTTTCCACCGACTCGTAG
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