mRNA_E_fasciculatus_S2_contig83.16445.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig83.16445.1
Unique NamemRNA_E_fasciculatus_S2_contig83.16445.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Flagellar (outer dynein arm light chain 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU73_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 5.050e-89
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLN+PRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE
Sbjct:    1 MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNVPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 132          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Flagellar (outer dynein arm light chain 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA97_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.420e-62
Identity = 92/132 (69.70%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            M E   +G  V+++VLPTY+ KP+EDE FYP++ KA++EK V+ EL  KEYD +EAKEWSLNIAD IRE +K L+IPRYK+VVQVT+GQMKDQGVRVASRCLWDTATDNYASV +K QSLWC+ M FG+YTE
Sbjct:    1 MEESQPKGRQVIDVVLPTYVMKPAEDEVFYPAKAKAMSEKIVKAELGGKEYDEQEAKEWSLNIADAIREQIKQLSIPRYKVVVQVTVGQMKDQGVRVASRCLWDTATDNYASVNYKTQSLWCNVMCFGIYTE 132          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6C1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.960e-59
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    1 MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKT-LNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            M EEP  G P+VE+VLPTYI  P+EDEKFY S+VKA+AE+ ++ EL+ KEY+  EAK WS+ I D +RE VK   NIPRYK+VVQV++GQMKDQGVRVASRCLWDT TDNYASV +KN +LWCS MVFG+YTE
Sbjct:    1 MNEEPMPGQPIVEVVLPTYIMNPAEDEKFYQSQVKAIAERILKEELEGKEYEENEAKLWSITICDRVREHVKEECNIPRYKVVVQVSLGQMKDQGVRVASRCLWDTNTDNYASVSYKNHTLWCSCMVFGIYTE 133          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVI1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.150e-52
Identity = 80/128 (62.50%), Postives = 99/128 (77.34%), Query Frame = 1
Query:   13 PRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            PR G  V+E++LPTY  KP EDEKFYPS+ KA+ E  ++  L  +EYD E AKEW  NI + I++ VKTLNIPRYK++ Q+TIGQ++DQGV +ASRCLWD A DNYASV F N SLW +AMVFGVYT+
Sbjct:   11 PRPGQRVIEVILPTYAMKPGEDEKFYPSKAKAICEDILRTTLAGQEYDEELAKEWVTNIGNDIKDKVKTLNIPRYKVICQITIGQVRDQGVSIASRCLWDVAHDNYASVNFSNDSLWANAMVFGVYTD 138          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FB08_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.780e-51
Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 1
Query:   13 PRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEE-AKEWSLNIADTIREGVKT-LNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            PR G  ++E+VLPTYI KP E E FYPS VK +A   ++ EL  K YD EE AK+W+  I + I+  VK   +IPRYKI+VQVT+GQMKDQGVRVASRCLWDTATDNYASV++ NQ LWCSAMVFGVYTE
Sbjct:   18 PRPGQSIIEVVLPTYIMKPEETEIFYPSHVKRIAGAILEEELAGKMYDDEEEAKKWNTTICEKIKAQVKAECDIPRYKIIVQVTLGQMKDQGVRVASRCLWDTATDNYASVEYANQHLWCSAMVFGVYTE 147          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X956_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.870e-51
Identity = 82/129 (63.57%), Postives = 104/129 (80.62%), Query Frame = 1
Query:   13 PRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKT-LNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            PR G PVV++VLPTYI KP+E+E FYPSE+K +AE  V+ EL  K YD +++KE ++ I   I+E +K   N+PRYKIV+QVTIG+MK+QGVRVASRCLWD  TDNYASVQ+ NQ LWC+AMVFG++TE
Sbjct:   23 PRAGQPVVDVVLPTYIMKPAENEIFYPSEIKKIAEAVVKSELDGKLYDEDDSKESNVLICGKIKERIKEKCNLPRYKIVIQVTIGEMKNQGVRVASRCLWDNITDNYASVQYTNQHLWCTAMVFGIFTE 151          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJJ5_AURAN)

HSP 1 Score: 163 bits (413), Expect = 1.550e-49
Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = 1
Query:   13 PRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            PR G  V+E+VLPTY   P+E EKFYPSE K + E+ +  +L++  YD E AKEW L I +TI+  +K+LNIPRYK+VVQVTIGQMKDQGV VASRCLWD + DNYASV + N++LW + MVF +YT+
Sbjct:    6 PRPGQQVIEVVLPTYSMNPTEVEKFYPSEAKQICERVLTGQLENATYDDESAKEWILLIGNTIKSEIKSLNIPRYKVVVQVTIGQMKDQGVSVASRCLWDISNDNYASVNYTNETLWANVMVFVIYTD 133          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN77_AURAN)

HSP 1 Score: 162 bits (409), Expect = 6.480e-49
Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    7 EEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            E PR G  V+E+VLPTY   P+E E+FYPSE K + E+ +  EL +KEY  + AK+W ++I +TI+  +K L +PRYKI+VQVTIGQMKDQGV VASRCLWD   DNY SV F N SLW + MVFGVYT+
Sbjct:    5 EGPRPGQQVIEVVLPTYSMIPAEQERFYPSEAKRICERVLVGELDNKEYFEDSAKDWIISIGNTIKSEIKCLTVPRYKIIVQVTIGQMKDQGVSVASRCLWDITFDNYTSVNFTNSSLWANVMVFGVYTD 134          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SDH5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.230e-48
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 1
Query:    1 MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            M +  R G  V+EI+LPTY  KP+EDEKFYPS+++ +  +A++ EL +KEY  + AK+W L I + I+   K+LN+PRYK++VQVTIGQMKDQGV VASRCLWD   DNY SV + N SLW +AMVFG+YT+
Sbjct:    1 MQDGARPGQQVIEIILPTYSMKPAEDEKFYPSKIRQICTEALKDELDNKEYFEDGAKDWILTIGNKIKAQAKSLNLPRYKVIVQVTIGQMKDQGVSVASRCLWDLLFDNYTSVNYTNSSLWANAMVFGLYTD 132          
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YER0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.320e-44
Identity = 74/126 (58.73%), Postives = 95/126 (75.40%), Query Frame = 1
Query:   22 GPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKT-LNIPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 396
            GP  +    PTYI KP EDE+FYPS+V+ +A++ +  EL+ K Y+ EE+K+ SL + + I+E VK   NIPRYKIVVQVTIG+M+DQGVRVASRCLWDT+TDNY S  + N SLW  A+VFG YT+
Sbjct:    8 GPREIIDYKPTYILKPEEDERFYPSQVQKIAKEVLLAELEGKTYNEEESKDLSLGLCELIKERVKEGTNIPRYKIVVQVTIGEMRDQGVRVASRCLWDTSTDNYTSATYTNTSLWAVAIVFGCYTD 133          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig83.16445.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Flagellar5.050e-8999.24outer dynein arm light chain 2 n=2 Tax=Ectocarpus ... [more]
Flagellar2.420e-6269.70outer dynein arm light chain 2 n=1 Tax=Tribonema m... [more]
Hypothetical1.960e-5968.42protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.150e-5262.50protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical1.780e-5166.15protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical2.870e-5163.57protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized1.550e-4960.16protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized6.480e-4959.23protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical1.230e-4857.58protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical9.320e-4458.73protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig83contigE_fasciculatus_S2_contig83:37366..41708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score263.1
Seed ortholog evalue7.2e-68
Seed eggNOG ortholog2880.D8LU73
Preferred nameTCTEX1D1
Model size399
KEGG rclassRC00017,RC00040,RC00078,RC00253,RC00367
KEGG koko:K03103,ko:K06085,ko:K11262
KEGG ReactionR00742,R03434,R04385,R04386,R09532
KEGG Pathwayko00010,ko00061,ko00254,ko00562,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04520,ko04910,ko04922,map00010,map00061,map00254,map00562,map00620,map00640,map01100,map01110,map01212,map04152,map04520,map04910,map04922
KEGG ModuleM00082
Hectar predicted targeting categoryother localisation
GOsGO:0001669,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0008157,GO:0009987,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019898,GO:0019899,GO:0019902,GO:0019903,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0030286,GO:0031410,GO:0031514,GO:0031982,GO:0032838,GO:0032991,GO:0036126,GO:0042623,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097223,GO:0097708,GO:0097729,GO:0099503,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
Exons3
EggNOG free text desc.regulation of intraciliary retrograde transport
EggNOG OGsKOG4108@1,KOG4108@2759
Ec32 ortholog descriptionflagellar outer dynein arm light chain 2
Ec32 orthologEc-16_000480.1
EC2.1.3.15,3.1.3.62,3.1.3.80,6.3.4.14,6.4.1.2
Cds size399
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842490.4295228-CDS-E_fasciculatus_S2_contig83:37365..374851696842490.4295228-CDS-E_fasciculatus_S2_contig83:37365..37485Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig83 37366..37485 +
1696842490.4527135-CDS-E_fasciculatus_S2_contig83:40845..409581696842490.4527135-CDS-E_fasciculatus_S2_contig83:40845..40958Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig83 40846..40958 +
1696842490.4648867-CDS-E_fasciculatus_S2_contig83:41542..417081696842490.4648867-CDS-E_fasciculatus_S2_contig83:41542..41708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig83 41543..41708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig83.16445.1prot_E_fasciculatus_S2_contig83.16445.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig83 37366..41708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig83.16445.1

>prot_E_fasciculatus_S2_contig83.16445.1 ID=prot_E_fasciculatus_S2_contig83.16445.1|Name=mRNA_E_fasciculatus_S2_contig83.16445.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp
MAEEPRRGPPVVEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKE
YDGEEAKEWSLNIADTIREGVKTLNIPRYKIVVQVTIGQMKDQGVRVASR
CLWDTATDNYASVQFKNQSLWCSAMVFGVYTE*
back to top

mRNA from alignment at E_fasciculatus_S2_contig83:37366..41708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig83.16445.1 ID=mRNA_E_fasciculatus_S2_contig83.16445.1|Name=mRNA_E_fasciculatus_S2_contig83.16445.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4343bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:37366..41708+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTGAGGAGCCGCGAAGAGGCCCTCCCGTGGTGGAAATCGTGTTGCC GACCTACATCACAAAGCCCAGCGAGGACGAGAAGTTTTACCCGTCCGAGG TCAAAGCAGTGGCGGAGAAGGTACGCACGATCTTCCAATATTGCCGAATG TACCCCCTATTTCGGTGTAAGACGTGACAGTCTGTCTTTGTTTGATGCCA AACAGCAGTGATGCTTTTCTGAACGAGCCCTGGAAGCTCTTGTGGGCTTG TGCCGGTGCTACAAAGTACAGCAGTGCCGACAGTTAAGTACCCGCGTCTA CATGTATTGTAGTTGAGGTACGGACTTGCCGCTGTAGCGTAGCGTTGTGG GTAGAACTGTATGGCTGTAGACTATGGTTGTGGGTAGAACTGTATGGCTG TAGACTATACTGTAAGTCTATACATCAGTATGTAGAGGGTCGATCAACAC CAGCTTGGTTGAACCTGCTGGGTGGGGGCAGACTACTGTGGAATTGCCCA AAATATTCCCCGGAGTGCTCTCAACATTCGTCGAGGGTTATTTGAGATGA GTGATGAGGTATACGCTTCCCGTGAGTGATGTTGTACAACACGTACGTAG CCGCGTTGCACGGTACATACTGTAGACTTGAGTTTACTGTACGGTACAAT TTTAGGTCCTGGGCGGTACATGTTTTGAAATCCCGGGTTCTGACGGCAGA GTACTACCACCGTCATTCTGACCCAAACAAAAAATTGTACTCCGGAGTGT GAGTCACTTTCGTGATCAACCCAGAAATGAAATATGCACTGTTGGTTTCT GACTCATACACAGAGTGTGATAGACGTCGGCCTCCGGAAAAAAAGTTGAT CCCCGTAGGCGAGGGTCAAGCACACCTAGAAATACAACAGCCACATCGCG TCGCTTGCGCTGGGCTCAATCCAAACTTCGGTAAGCTTCAGCCGTCTCGT CAATGGTGATCGGTGGAAAAGCGACCTATCGTATGACCCATGAACTTTGA GTATTATATGTGTTCGCACGTATGGGCGATATGAACTGGCGTACTCTTTT GGAAATAGGTTGGATAAATCGAGGGGATGACCTATCTATAACTAAAATAT TGAAGCTCATCTTGCAAACCGGTCAATACAGATTCAGCGGTTACGTCCGT TTGGCGCTCCCGTCAGGTGTTCAGCGCAGCAAGAATTGCAAGTACATGAA ACCAGCTACAGTATACTGTTTCGCGAAAGCTACAGACCTCCTGGGGTTTG AAACGCTCTTACAAAGTTGGTTTTCCGGCCAACAAAGTTCAGTAGGCACT TACCGTGTCCTCGAGAATGCCATCAAGTAGGGAAACAACGACGCGAACAA GAAACTGGGGGAATGTGCTGCTCCGAGCGAAGCAACGGGGTGCGCGGTAG GGAGTAGCAAAGCCTCGGCGGAAACAATTCACGGGCAAATAGGTAAAGGA GACTTCAAGTCGATAGCCAAATCCGTGTCGGCCTCGCAACCGCCCAGACA ATGTTTTTACCTGTTGACATGAGGAAATCGCCATCCGCAGCTGGTAACCT TTGCTGTGTCCGGCAGGAGAAATCTACCAACGTGTGTCGTCGGAACAAGG CACGCCGGCTGGCGTGTTCTGGTGTTTTCATCGTCTCCAACTATGTTCAT CTGGAGCGAATCACTCGCCTTGCAAGCCATCTAAGGGCTGAACGCGCTTC AAAAGCAGGCCGTTTGTCACGAGTTTCGGTGGTACGGCAGTAATGAAAAA CAACCGACGAGAGACGTGACCGTGAGAGAACAGTCCAAACAGAGGAGGGC TCTAACCTCTGCTGAACTTACGTAAACGGCCGGGATAAACTTTCATGGTG CAGTCACACACGAATGAATATCCTTGATTCTTCGTCCAGCCGATGTGCCG CGTTAGTCCTGGACGCAGAGAAGGAGGGAGGGGAGGGAGAGGGTAGAGAG GGAGGGAGGGAATGAGTGAAGGAGGGGAGGGTGGGAGGGAATGGATGAGG GGGGGAGGGGAGGGAGGGAGAGAGGGCCGTGATCGTTGTAGGCCAGCTGT TCATCCTCGAGCGTCAGACTTTCCGGCGGCAAAAAAGACCACCGGGACAG ATTAATCTTGGCGTTCGCCAACCAGCTGAATCCATCCTTTTAACTTGGTG CCTGCTTGGCGCCTTGTCTCTTTTCGAGTACTTTTGGCAATTTATTTCGC TGTTTTCTTCTGGGCACCGCATTCAAACCAACCAGTTCACAGACCAACAT ACATCAACCGGGAGCTTTGGAGCTACAACTGGTGCACGCCACACGCCCAC AACAGGATAGAGTAAGCAGAGAAGTTTTGCAACGACAACCAACATTCAGT GTCGATAACGAGCACGCAGCGGCACTAAGAAGAGTTAGAAACAGCGAGGA GATACACGCACATGAGCATACTTATGTCGACCCACAGCGGTATGTACAGT AGTACCCACACTCAGGGATCCGAGCATGTTTATATGTCATCTGCACGGCC GTCCTCTCGCCATACCACTAAAGTAAACATGATGATGATGATGATGATGC TCTGGCATCTCGGCATCTATCTATGCATACTACCTGTTTTCTCTTTTCTC TTCTTCGCTCTTGACTCCATCTGGGGTTCTTTGGAATCAACGGCCCAAAG CATCCATCAACAACCCGCATGCCAGGGTGATATACTTGCTGCCGCGGTTA CTACACCTCTGGTCTGGTGTCAGAGCTCCTCTCATTCGTTGATTCAGATT TTGAAAGCGCGCGGCCCGCAGACAGATGGGTTTCGAAACCCCTGTCCCGG TACAGTACATAAACATGTTGCCGACTTCCCAGCAATTGCTTGTACCATGG TATATCGTACTTGTAGTATCGATTCAACGCAACCGTCGTTTCGGTTCAGA GTAGGTATCTCTTCTAGCTTTCGACGACAATACTTTATGTTCACAAAGCG TCTGCCAGCAGCGTATGATACAGCGAAGAGCTGTTGGTAAGACCTCAAGC TTTCCCGAATGTTTCGTGCAGTGAACTTTGGCCGCCAATCTCCCAACTCG GTTGATATGTACGTGTTCATGCGTTTGGGTCATCATCAATCTGGTAGGTT AAAGACGTCGATATATGCGACGAATGTGCACCCCCAAGCGAGAACCCCCC GCGGCAACATTATCGAAATGATGAGATAGGGGGATCGCCTACTCTTTCCG CCGCCATCCGCTACCCACCTCACCCATGTTCATCAGCATCGATGATTACA TGTACGGTGCTAAAAAAAGGGTTTGGACAACCCTAACCAACAAGTGTTTT GAGGAACACGAACAACGGTTGACAAACCTGCCTCGTTTTTGGAATGGTAG GGGGTCATGTGTTGAACATATAAAGTCTGAGGAAGCTCGCATGCCGTTGA CGTCCGCCCGGGCAGAAATACGCCAGATGTTTACAACGGTATCACCATTT TGGGCGCATACGGGTCGGCATATTTGGCAGGCTGTGCAGGTCGAGCTTCA GGACAAAGAGTACGACGGAGAGGAGGCCAAGGAGTGGAGTCTAAACATTG CGGACACAATCCGAGAAGGCGTCAAGACCCTCAACATTCCCCGGTAAGAA GAAATGCCAGCGATGCCAACGAGTAAATAGCCAGAGTAGGGGAGATATCC CGGAACACGTTCTCACACATTTTTTTGTCGGCCGCTCTACTTACACCCTC GCTTCTTTTCGACAAGTTTCGTCGCCATCTAGGTCCTACAGCAGAAAAAT ATAAGATAGACAAATTGTCCCATGCCCATTTCTATCTCCTCGACGGACGA CGAAGCTTGTGGTTTCCTACGCGACTTCGTCGACACCTAGACTCCGCGAA TGAGGTATATAGATGGAGTAGGCAGAGCTGTACCTGTAACAACCGCCATA ATTGTGTCCCAGCTGCGTACCTCGATGTGAGCAATTTTCCACGTCGACGG AGAGATTTGGGTGTTTGCTAATCAAGTGGTGTGCGTACAGGGGTTTCCGC GTACACGAATAGCTGCGGTTTGCCGCGTAGACTCGCTGCTCGGACCTACG CTATGTGGTATGGCAAAACCTCCGCACATCCTCCCAGAGGGTAGACGAAT TGTACCACGACCGAATCTGGGTTTCGTATAACAACCAAGCAATGTCTTGT CCTTGCACCAATCCGATTCAACAACAGGTACAAGATAGTGGTGCAAGTGA CGATCGGACAAATGAAAGACCAAGGGGTGAGGGTGGCGTCACGCTGCTTG TGGGACACGGCGACAGATAATTATGCCTCAGTGCAGTTCAAGAACCAGAG CCTGTGGTGCTCGGCGATGGTGTTTGGGGTGTACACCGAATAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig83:37366..41708+

>mRNA_E_fasciculatus_S2_contig83.16445.1 ID=mRNA_E_fasciculatus_S2_contig83.16445.1|Name=mRNA_E_fasciculatus_S2_contig83.16445.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:37366..41708+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTGAGGAGCCGCGAAGAGGCCCTCCCGTGGTGGAAATCGTGTTGCC
GACCTACATCACAAAGCCCAGCGAGGACGAGAAGTTTTACCCGTCCGAGG
TCAAAGCAGTGGCGGAGAAGGCTGTGCAGGTCGAGCTTCAGGACAAAGAG
TACGACGGAGAGGAGGCCAAGGAGTGGAGTCTAAACATTGCGGACACAAT
CCGAGAAGGCGTCAAGACCCTCAACATTCCCCGGTACAAGATAGTGGTGC
AAGTGACGATCGGACAAATGAAAGACCAAGGGGTGAGGGTGGCGTCACGC
TGCTTGTGGGACACGGCGACAGATAATTATGCCTCAGTGCAGTTCAAGAA
CCAGAGCCTGTGGTGCTCGGCGATGGTGTTTGGGGTGTACACCGAATAA
back to top