mRNA_E_fasciculatus_S2_contig8297.16442.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8297.16442.1
Unique NamemRNA_E_fasciculatus_S2_contig8297.16442.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAA9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.950e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGDK 133
            +RRTAAG FFELLQLKTWDF+ELSQ ESYGDI +  GPR  ++
Sbjct:  563 SRRTAAGVFFELLQLKTWDFLELSQDESYGDITIHPGPRFDEE 605
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6T6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.740e-12
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGD 130
            +RRTAAG FFELLQLKTWDF+ELSQ ESYGDI +  GPR  +
Sbjct:  534 SRRTAAGVFFELLQLKTWDFLELSQDESYGDITIHPGPRFDE 575
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7N0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.840e-12
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGD 130
            +RRTAAG FFELLQLKTWDF+ELSQ ESYGDI +  GPR  +
Sbjct:  740 SRRTAAGVFFELLQLKTWDFLELSQDESYGDITIHPGPRFDE 781
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPB4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGD 130
            +RRTA G FFE+LQLKTWDF+EL Q ESYGDI++TAG R  +
Sbjct:  459 SRRTAVGVFFEMLQLKTWDFIELDQAESYGDIKITAGNRFAE 500
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2I553_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.740e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGD 130
            +RRTA G FFE+LQLKTWDF+EL Q ESYGDI++TAG R  +
Sbjct:  717 SRRTAVGVFFEMLQLKTWDFIELDQAESYGDIKITAGNRFAE 758
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4F5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-10
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:    8 RRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGD 130
            RRTAAG FFE+LQLKTWDF+E++Q+ SYGDI V+ G R  +
Sbjct:   83 RRTAAGVFFEVLQLKTWDFIEVNQEGSYGDITVSQGRRFDE 123
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZ19_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.040e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRL 124
            TRRTAAG FFELLQLKTWDF+EL Q++SY DI++T G + 
Sbjct:  402 TRRTAAGVFFELLQLKTWDFLELDQEDSYADIKITPGVKF 441
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Mitotic (cohesin n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUM0_PHATC)

HSP 1 Score: 63.9 bits (154), Expect = 5.360e-10
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:    8 RRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGD 130
            RRTAAG F ELLQLKTWD++EL+Q ESYGDI ++AG +  +
Sbjct:  618 RRTAAGVFLELLQLKTWDYIELNQNESYGDIRISAGIKFSE 658
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2Z1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.930e-10
Identity = 24/43 (55.81%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:    5 TRRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRLGDK 133
            +RRTA+G FFE+LQLKTWDFVE+ Q++++GDI +++G R  ++
Sbjct:  115 SRRTASGVFFEILQLKTWDFVEVDQEKAFGDIRISSGTRFTEQ 157
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YLZ6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.240e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:    8 RRTAAGAFFELLQLKTWDFVELSQQESYGDIEVTAGPRL 124
            RRTAAG FFELLQLKTWD +E++Q  SYGDI V+ GPR 
Sbjct:  512 RRTAAGVFFELLQLKTWDLIEVNQANSYGDIVVSKGPRF 550
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8297.16442.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical4.950e-1272.09protein n=2 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical6.740e-1273.81protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical6.840e-1273.81protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical1.700e-1169.05protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.740e-1169.05protein n=4 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.370e-1065.85protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Hypothetical2.040e-1070.00protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Mitotic5.360e-1065.85cohesin n=3 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Hypothetical5.930e-1055.81protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Hypothetical7.240e-1071.79protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8297contigE_fasciculatus_S2_contig8297:4086..6105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.7915-UTR-E_fasciculatus_S2_contig8297:4085..41061696842489.7915-UTR-E_fasciculatus_S2_contig8297:4085..4106Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8297 4086..4106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.804327-CDS-E_fasciculatus_S2_contig8297:4106..42251696842489.804327-CDS-E_fasciculatus_S2_contig8297:4106..4225Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8297 4107..4225 -
1696842489.8161728-CDS-E_fasciculatus_S2_contig8297:5311..53801696842489.8161728-CDS-E_fasciculatus_S2_contig8297:5311..5380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8297 5312..5380 -
1696842489.8277302-CDS-E_fasciculatus_S2_contig8297:6059..61051696842489.8277302-CDS-E_fasciculatus_S2_contig8297:6059..6105Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8297 6060..6105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8297.16442.1prot_E_fasciculatus_S2_contig8297.16442.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8297 4107..6105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8297.16442.1

>prot_E_fasciculatus_S2_contig8297.16442.1 ID=prot_E_fasciculatus_S2_contig8297.16442.1|Name=mRNA_E_fasciculatus_S2_contig8297.16442.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
CYEADSGGSVLRAAAAQDVGLRGVVPAGVVRRYRGHGGATPWRQGPGRKR
LGLACLQYTWVSCTCRTRLSYLGGRIA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8297:4086..6105-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8297.16442.1 ID=mRNA_E_fasciculatus_S2_contig8297.16442.1|Name=mRNA_E_fasciculatus_S2_contig8297.16442.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2020bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8297:4086..6105- (Ectocarpus fasciculatus EfasUO2)
TGCTACGAGGCGGACAGCGGCGGGAGCGTTCTTCGAGCTGCTGCAGGTTG
GTCACACTATAGGCCACACTACACAACCACATGATACACTCAATCAAGAT
ATGTGCTTGGAGCACCATGGAGCACCAGCAGTCAGTCGAGATATTTCGAT
TAAGCACCAGGGGCTGCCTATTGTTGTCTCTCCGTCTATATTAATAGGTG
GTGCCACGCGTTGGGATCGGTGGCTAGGGAGTGTGCTCTGGTGCCCCTTG
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTCCCTCTCGATG
GTTAGTGCCTGGTGTTGATTGTGCAGCGACCATGCTGACTATAGGAACGA
GGGCTGCAGACACACGAACGTAAACGCAGACACTTACACTTGTACACTTT
TTCATGGCTCGTTCTTGTTCTCCCTGCTACCACTGGTGGCCGCGATTGTG
TGTTTTGAGCTCGTCTCTGTTTGCTGTATTACGCATGCGTGCAGAACGGT
GCTTTCTTGTTTTTTTTCATGATTTATATCCTGCCTCTTGTGCTAAGGCT
TCGGGGACTAAAACAAAAAGCATTGAAACCTTCCCCAAAAGCGTGAATTT
TCTCTTGTGTCCGGTTTCGCCGCTGGTTTGACATACGTCACGCGACATGG
GCCCTTTCAGTGCCCCTTTGATAGCCCCGACTTTCCATTCCGCACGTTGC
TCGGCGTTGTGTCGTTCTATTGTAGCTCAAGACGTGGGACTTCGTGGAGT
TGTCCCAGCAGGAGTCGTACGGAGATATCGAGGTCACGGCGGGGGTGAGT
GTCTCTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACAAGAGAG
AGGAGTATCATGGTGTACTTGGCGCGATGCTTCCGCGCTTCTCCGTTTCC
ATGGGCCAGAGCGAACGGCATGTAGACCTTGACTTGATACGATCGAGTTC
TTGTCGAGACCGTGCTGTTACGATTCGGTTTCAGGTAATGCCATGGATGA
AGCCCACTGTTCCAGCATTCCACTTGATGGTGCGGTCCTCCGCTCTATGT
AGTAACGCGCTCTACCCGAGGTGTTAAGCGTTGTGTGTCCTCTCGCCCGG
TTAGTTTGTTTTTGGTGTGTTGAACGTTAACATTTCATTCCGACGGCACC
CGCAAGAGTATTGTAGCGATACTTATACTTGCTTTTTTTCTTTTTTTCTT
CTTTCTTTTTTCCAAGTCTGCTGGTAAGGCAAGGTGCGGGGTGGCCCACA
GATGGCCGTTCGTTTCGTTGTGGAAATTTGTCACCATGTCACTATGTCAC
GATGGAGAGCTAGCTCTTCGAAGGGAGATCTCCGAAGACGTGTTATACAT
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGACACACACGCGCGCGCGCTGTGAG
AGAGAGAGACACNNNNNNNNNNGGAGGACGGGGGGGAGGGGGGGGGAGAG
GGGGGGGAGGGGGAGGAGGGAGGGGAAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATACCCGCTCGT
TCGTTGTGAGTCAAAGCCAGACGACAACCTAGGTCGCACGGCTGTGTAGT
CTAGCGGCCCTCCTTTCCGACAATCCAGCGTTTGACCGCCAAAGACCTTT
GTACAAAGCGTGCTCAGCGCTTTCAACGCCCGACCCGCCTCTGGTACTAA
ACTGTACACTAGCCACTAGCCACTCACTCAACTCTCTTCTGTGTCCCCCG
CCTGTTCTTCGTTCTGTTGTTGCCTTGGGTCGGTGGGTCGGTCCGTCTGT
TGTGGTTTGGCGCGGCGGGCGGCGGTACAGCCACGCCTTGGCGACAAGGT
CCAGGCCGCAAACGTCTAGGCCTGGCGTGTTTGCAGTATACGTGGGTCAG
TTGTACTTGTAGGACGCGTCTATCTTATCTTGGTGGTAGAATAGCCTAGC
CTAGCCTAGCCTTGCCTAGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8297:4086..6105-

>mRNA_E_fasciculatus_S2_contig8297.16442.1 ID=mRNA_E_fasciculatus_S2_contig8297.16442.1|Name=mRNA_E_fasciculatus_S2_contig8297.16442.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8297:4086..6105- (Ectocarpus fasciculatus EfasUO2)
TGCTACGAGGCGGACAGCGGCGGGAGCGTTCTTCGAGCTGCTGCAGCTCA
AGACGTGGGACTTCGTGGAGTTGTCCCAGCAGGAGTCGTACGGAGATATC
GAGGTCACGGCGGGGCCACGCCTTGGCGACAAGGTCCAGGCCGCAAACGT
CTAGGCCTGGCGTGTTTGCAGTATACGTGGGTCAGTTGTACTTGTAGGAC
GCGTCTATCTTATCTTGGTGGTAGAATAGCCTAG
back to top