mRNA_E_fasciculatus_S2_contig8290.16438.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8290.16438.1
Unique NamemRNA_E_fasciculatus_S2_contig8290.16438.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8290.16438.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 5.130e-55
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 2 
Query:  245 MPNEYEAFFNKASRLGADATRGLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATESMDGDGVPDADDGEEDASSSC 577
            MPNEYEAFFNKASRLGADATR LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATE+ DGDG PDADDGE+  +SSC
Sbjct:    1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDGED--ASSC 109
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8290.16438.1 vs.
Match: Uncharacterized (protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.800e-9
Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  311 LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMG 505
            ++ EER + A+ GE+LEDEI+  AT LR+ AD MV +TGA++ + ++P+IDEI  LK++Y+ V+G
Sbjct:    1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 65
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8290.16438.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.130e-5592.79protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.800e-949.23protein n=3 Tax=Tribonema minus TaxID=303371 RepID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8290contigE_fasciculatus_S2_contig8290:3031..6247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2220
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002180.1
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.425182-UTR-E_fasciculatus_S2_contig8290:3030..46701696842489.425182-UTR-E_fasciculatus_S2_contig8290:3030..4670Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8290 3031..4670 -
1696842489.4827414-UTR-E_fasciculatus_S2_contig8290:6228..62471696842489.4827414-UTR-E_fasciculatus_S2_contig8290:6228..6247Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8290 6229..6247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.445073-CDS-E_fasciculatus_S2_contig8290:4670..47581696842489.445073-CDS-E_fasciculatus_S2_contig8290:4670..4758Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8290 4671..4758 -
1696842489.4572513-CDS-E_fasciculatus_S2_contig8290:5235..53811696842489.4572513-CDS-E_fasciculatus_S2_contig8290:5235..5381Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8290 5236..5381 -
1696842489.467545-CDS-E_fasciculatus_S2_contig8290:5901..62281696842489.467545-CDS-E_fasciculatus_S2_contig8290:5901..6228Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8290 5902..6228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8290.16438.1prot_E_fasciculatus_S2_contig8290.16438.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8290 4671..6228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8290.16438.1

>prot_E_fasciculatus_S2_contig8290.16438.1 ID=prot_E_fasciculatus_S2_contig8290.16438.1|Name=mRNA_E_fasciculatus_S2_contig8290.16438.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=187bp
MHPGIVLHLAALPGIAHAFVGGWASFVVGTEQHRQQDRCADGESFARAGS
RFADSTRRPPVAAPAAARRGQQLRLMPNEYEAFFNKASRLGADATRGLAP
EERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEI
AVLKSKYKVVMGATESMDGDGVPDADDGEEDASSSC*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8290:3031..6247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8290.16438.1 ID=mRNA_E_fasciculatus_S2_contig8290.16438.1|Name=mRNA_E_fasciculatus_S2_contig8290.16438.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3217bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8290:3031..6247- (Ectocarpus fasciculatus EfasUO2)
GCTTCGAGTACTAACAGGAATGCATCCAGGTATTGTGCTCCACCTCGCCG
CCCTCCCTGGAATAGCCCACGCCTTCGTGGGAGGATGGGCTTCTTTCGTG
GTCGGTACTGAGCAACATCGACAGCAGGACCGATGTGCTGATGGTGAGTC
CTTCGCGCGAGCGGGTAGCAGGTTTGCTGACTCCACGAGACGGCCTCCTG
TTGCGGCGCCTGCAGCAGCACGGAGGGGGCAGCAGCTCCGGCTTATGCCC
AACGAGTACGAAGCGTTTTTCAACAAGGCGTCCAGGTTAGGGGCGGACGC
AACGAGAGGCCTCGCACCCGAAGAGCGCGCACAGAGAGCTATGGAGGCAA
GTTGACGTACACATGCATCTTTGTCATCATCCATGGGAGCATGTACATGA
CGAAGGAAGGCGCCTTCCGCCCCCACCTCTCTGCACTGCCGACGGCCTTC
TTCCTGGGCGGAATAGTGCACGCCTTGAGAGGAAAGCCTTGTTTGCGGTA
TGTGTGATAGCATGGTAGAAGCGAAAAGGTACGTCGCACTGCTGTTGCAC
ATGATGACACAACGTTCTCCCAAGTGTCCATTGTGTGAGTTTTCCCGACA
TTTGTGGTAAAACGGGGCACCAGGTTGTCATGCTGCTGTCTAGCTCTCTA
CTGCACCCCAGGGGACAGCAGCCGGCAGCATCCTGTGCTTCCTGCGCCAG
GCAAGAGCTGTACCTTTCAAGAAGGCCAGCGCTGGCAGGCACAGGTATTC
CAACGGAACGTCCGCTGCAGTTGGTACACGCAGTTGGAAATATTTCGAAC
CGCTACTGCACACTCTCTCGTGTATTGAACGCTGCTGCTGTGGTTACTTG
CTGTGGGTGCTGCCAGGGGGAGAAGCTCGAAGACGAAATCATTGAGATCG
CGACCGTGTTGCGAGAGAAAGCGGACGAAATGGTGGCCGAAACGGGCGCT
ATCAACTTCGAGATCATCCAGCCGATGATTGACGAGATCGCCGTCCTGAA
AAGCAAGTACAAGTGAGTGCCGAACACTACAAACAAACAAGAAGACAAAC
AAACCAGAACCGTCTGAACCGCCGGTGTTCGCGCAGTAAGAGGCAGGAAG
AAGACATGCCGCGCTGGACGCGTTTGGGTCTACTGCTGTAGACATCGTTG
AATACACATTCCATGTGAGGCGTCTCGTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGGTTCTGTCAGTCCCTCTGCTCTCATTATTGTT
TGTCTCTTCGTCGTTTCCTATGTTGTACGTGTCGTTTGTTGATCGAGTGA
TTTGAACCTCAGTGTCAGCGGTCTACGCACACCTCGAAACATTGCGCAAA
TTCGACGGTTGCACACCACCCCTGGTGGGAGCCATTAGTCTAGCAATCAT
CGATCGGCGAGCTCGGACGCACGCACGCGCTGCTCCACGCTCTCGCGCTC
ATAACAACCCCTACTCGTGCTCTGTACGCACCACTCCAGGGTGGTCATGG
GGGCAACTGAGAGCATGGACGGAGACGGAGTTCCGGATGCCGATGATGGA
GAGGAGGATGCCAGCTCTTCTTGTTGACCTAGACCACTCCTGCTAGACGC
CCATTGTCTCCTCTTCCCTTTTCGGGCCGGAGGAAAGGCGTGCCCGTCGT
GGTTGGCTCCCTCGCCTGAAGCATTTGGAGAGGGGCGGGGGGGGGCTTCG
GGCCGGACGAGGGGTGCAAGGTGCTAACCCCACCCCCTTGGGACTCGCTA
CAGTAGTACAGTAGTGCCGGGTTTCAGCTTGTTTACTCTGATTGGGCTGC
TGTCGTTTTGCGCCCTCTCTTGGAGCCTTTGTGCTGCCGTCCGAAGGTTA
GATAGAGGATGTGGGGTGGACGGTTCGCGGTCTTGTTGGCGTGGTACTCA
CATGTTCCTTTTACTCGAGAGCTAGTTTTGTGGTTTCATCCCGTCCTACT
GTAGTGTTTTCGTTTCAAGAGTGTTCATCTGGAGTGTGCAAGGAGTACTA
TTGAATATATATACCACTGCTGGTGAGTCGCATGCAAATCGTTCGGGGTT
GCTCCTGGCTTGATTGGCGTCGACATGAGATGCGCATTAGAAATAACCCG
GGTGTTAGCCCTTACCTTCCGTGTAGGCGCCGTATGCTCTTCATTAGAAA
GAAAATGCATGCATGTAGCACCTAGATAGCAGGGCAGCATACGATGGATT
CCCTTACAAGAAACGCACGCGAAGCAGTTTGATGAGTGTGTGAAACTGCC
GCAGGGCTGAACGTGCTTTGTCGCACTCGGAAGCTTCGTTGTTCATGCTC
GGTCCTTTCAGAATGGGGACACAACAACCATGCTCATGAGTGCCGAACAC
CTTGAACGTTACCCGTACAGCGGGCGGTTCCTCCCTACACTGGTGTACAA
TTGTAGTGGTAACCGTTGGAAGTTGTGCGTGTCATTGCTGTCCCGAGTTT
CGTACAGTTGTACGTTTTCTACGAAGCAGCTCGGTCGTAGAGGCGACTGC
AGCTTGATGTTGGTTTGTGTGCCACGAAACCGTCGTGTTTGGCGTGTCAG
CCCTTGAAATAGATCTGTCTGATTGTAGTTGGACAAGCAAGATACAAACA
GCAGTTTGGCAACCAGTAGAATGGTGAGATATTTTCTTGTGTTTGTTTTA
TATAAAGCGAGAACCACCAGGGCACGCGTGGTTTCATCTTGCTACATACG
GACATTGCTTCGGTGCCGGGTGTAGGGAGTGTGCATCTCGAGACGATCGA
ACCCGGGCATTCCCGACGTCGCGCGCAGCATGCCGATAAGTGAGCATAGA
GCTGGTGGAGTCAGGACCAAGCCAGTTGTTGGGAAAATAACCAAAGTTTC
GACGCGACAAGAGACCTTGTACGTTATCTTAGCCACGACTGCAGTGCCCC
TTCTTCCGTCGTACATCGTTCAGTAACGCTGGGTATACTTGACCTTTTTT
GGTGGTACGATACGCGACGAACTTCACAGCGAAAACGGAACAATCTTAGT
GATGCCACCAACGCACATCGCATCAGAGGAGATAGGTCCTTGCGCACAGA
AAAACCGTCGCGCCGGTTCTCCGTTCGGCCAGAACCACTGCCAGAAGCGG
CGGAAGTATAACCCCCGATCGTGAGCTTTGCCCGCACACCCGCGTGCTGC
AAGACTTGACGGGCGCTTCAAGACTCGACGATAGTGTACTGTTGTCTCCA
TGTACCCATGCGAGGAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8290:3031..6247-

>mRNA_E_fasciculatus_S2_contig8290.16438.1 ID=mRNA_E_fasciculatus_S2_contig8290.16438.1|Name=mRNA_E_fasciculatus_S2_contig8290.16438.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=561bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8290:3031..6247- (Ectocarpus fasciculatus EfasUO2)
ATGCATCCAGGTATTGTGCTCCACCTCGCCGCCCTCCCTGGAATAGCCCA
CGCCTTCGTGGGAGGATGGGCTTCTTTCGTGGTCGGTACTGAGCAACATC
GACAGCAGGACCGATGTGCTGATGGTGAGTCCTTCGCGCGAGCGGGTAGC
AGGTTTGCTGACTCCACGAGACGGCCTCCTGTTGCGGCGCCTGCAGCAGC
ACGGAGGGGGCAGCAGCTCCGGCTTATGCCCAACGAGTACGAAGCGTTTT
TCAACAAGGCGTCCAGGTTAGGGGCGGACGCAACGAGAGGCCTCGCACCC
GAAGAGCGCGCACAGAGAGCTATGGAGGGGGAGAAGCTCGAAGACGAAAT
CATTGAGATCGCGACCGTGTTGCGAGAGAAAGCGGACGAAATGGTGGCCG
AAACGGGCGCTATCAACTTCGAGATCATCCAGCCGATGATTGACGAGATC
GCCGTCCTGAAAAGCAAGTACAAGGTGGTCATGGGGGCAACTGAGAGCAT
GGACGGAGACGGAGTTCCGGATGCCGATGATGGAGAGGAGGATGCCAGCT
CTTCTTGTTGA
back to top