mRNA_E_fasciculatus_S2_contig829.16435.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig829.16435.1
Unique NamemRNA_E_fasciculatus_S2_contig829.16435.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V2_9PHAE)

HSP 1 Score: 677 bits (1747), Expect = 1.010e-242
Identity = 384/442 (86.88%), Postives = 392/442 (88.69%), Query Frame = 1 
Query:    1 MAEFGAKLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEYLASRMDEGGRTAAPGSHPLSLSKPSEVMSAVTSRFDGREKELNAATTHFNIKTSEGEAGEGSAGAPDRLLKNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGASRGLPTGGILNNLLPEQLQSFDAVTVRPRTLPPAGSSASDTAAAGXSSDSTVAAPGLNVESAPEDLKCSGIGRGDGEPSQXXXXXXTAHVLSTCAAGEKASGGGDVDRHEEAGAGSGVTLVAAGTPATNXXXXXXXXXXXXXXXMTITVGHGKSVYELGGVMPDRESVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVDGAKVMLLGTAAAAKK 1326
            MAEFGAKLCSYPGCRQHDFLPYAC ACRQVFCSDHMAIGSGHRCD GEEYLASR  +GGR AAPGSH LSLSKPSEVMSAVTSRFDGREKELNA TTHFNIK SEGEAGEGSAGAPD+LL+NSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGAS GLPTGGI  NL PEQLQ FDAV VRPRTLP AGSSASD +A G SSDSTVAAPGLNVESAP+DLK SGIG GD EPS+      T HVLSTCA G K+SG       EEA AGSGVT  A       XXXXXXXXXXXXXX MTITV HGKSVYELGGVMPDR SVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIV+GAKVMLLGTAAAAKK
Sbjct:    1 MAEFGAKLCSYPGCRQHDFLPYACAACRQVFCSDHMAIGSGHRCDHGEEYLASRNGKGGRIAAPGSHRLSLSKPSEVMSAVTSRFDGREKELNAVTTHFNIKASEGEAGEGSAGAPDKLLRNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGASSGLPTGGIFTNLPPEQLQLFDAVMVRPRTLPRAGSSASDISAEGGSSDSTVAAPGLNVESAPDDLKGSGIG-GDEEPSEQQQRQ-TGHVLSTCAVGAKSSG------FEEAVAGSGVTS-AXXXXXXXXXXXXXXXXXXXXXGMTITVCHGKSVYELGGVMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTAAAAKK 433
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BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN6_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 7.400e-158
Identity = 271/325 (83.38%), Postives = 278/325 (85.54%), Query Frame = 1 
Query:  352 RLLKNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGASRGLPTGGILNNLLPEQLQSFDAVTVRPRTLPPAGSSASDTAAAGXSSDSTVAAPGLNVESAPEDLKCSGIGRGDGEPSQXXXXXXTAHVLSTCAAGEKASGGGDVDRHEEAGAGSGVTLVAAGTPATNXXXXXXXXXXXXXXXMTITVGHGKSVYELGGVMPDRESVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVDGAKVMLLGTAAAAKK 1326
            RLLKNSQLAMDKAATEKGKR+STQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALD ILKTRRRH+RLKAGEEARPLELARVGAS GLPTGGILNNL PEQLQSFDAV VRPRTLPPAGSSASDT+A G SSDS VAAPGLNVE AP+DLK SGIG GD EP++      T HVLSTCA G KASG       EEAG GSG            XXXXX   XXXXXX MTITVGHGKSVYELGGVMPDR SVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIV+GAKVMLLGT AAA K
Sbjct:   32 RLLKNSQLAMDKAATEKGKRMSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDHILKTRRRHMRLKAGEEARPLELARVGASSGLPTGGILNNLPPEQLQSFDAVMVRPRTLPPAGSSASDTSAQGGSSDSAVAAPGLNVEGAPDDLKGSGIG-GDEEPNKQQQRQ-TGHVLSTCAVGAKASG------CEEAGEGSGXXXXXX-XXXXXXXXXXASEXXXXXXGMTITVGHGKSVYELGGVMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTVAAAAK 347
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUT0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.520e-12
Identity = 76/232 (32.76%), Postives = 107/232 (46.12%), Query Frame = 1 
Query:    4 AEFGAKLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEYLASRMDEGGRTAAPGSHPLSLSKP-SEVMSAVTSRFDGREKELNAATTHFNIKTSEGEAG-EGSAGAPDRLLKNSQLAMDKAATE-KGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTD---------------------------VHHLFFSRLWTVGRALDDILKTRRRHLR 609
            A +G K C+   C ++DFLP+ C  C  + C+DHMA  + H C       A R D    T+        L +  +E M  V  RFDG  +   A   HF ++ S+  AG   S  A ++ LK  +       T  KG +   +V +MLLK+KA G   L  +DRF+LEV   G D +                           V +LFFSRLW++GR LD+ ++  RR LR
Sbjct:    3 AHYGDK-CAL--CGRNDFLPHRCTLCSLLHCTDHMAPFA-HEC-------AGREDN---TSKDRPQAFGLGRALAEEMDRVRRRFDGASEW--ATKEHFRVQGSQ--AGLVASFRAENKYLKAYREQAKAGKTRHKGHKTREKVRQMLLKSKAQGRSSLHADDRFYLEVRIGGLDVEEKGTASPSSLPPSAPASTPSVASSAEVVDYLFFSRLWSLGRVLDETIEKHRRALR 216
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BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: AN1-type (domain-containing protein n=4 Tax=Ixodes TaxID=6944 RepID=V5I0M0_IXORI)

HSP 1 Score: 65.5 bits (158), Expect = 2.900e-8
Identity = 56/201 (27.86%), Postives = 87/201 (43.28%), Query Frame = 1 
Query:   19 KLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEY-LASRMDEGGRTAAPGSHPLSLSKPSEVMSAV----TSRF--------DGREKELNAATTHFNIKTSEGEAGEGSAGAPDRLLKNSQLAMDKAATEKGKRVSTQ-VHRMLLKAKAVGDKKLRMEDRFFLEVHYC-GNDTDVHHLFFSRLWTVGRALD 576
            K C    C + DFLP+ C  C+++FCSDH      H CDQ E + L     +  +T           K  E+M  V    +  F        D + K L + + H  + T              ++L++ + +   A+T      + Q V  M +K  A G+K + + DR + EV+   G+        FS+LWTVGRA+D
Sbjct:    9 KHCHVESCNRLDFLPFECAHCKKIFCSDHRT-SDAHVCDQIETHVLTDSQAKSSKTGTLFGCTFGDCKQKELMPVVCTLCSDNFCVHHRHAQDHKCKYLASPSEHMPLTTQ----------VVQKILESKKPSEKPASTRANISPTAQKVKLMRMKMHAAGEKSIPLVDRVYFEVYLPKGHKVRSKPYHFSKLWTVGRAID 198
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX29_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 3.980e-8
Identity = 77/292 (26.37%), Postives = 122/292 (41.78%), Query Frame = 1 
Query:  433 MLLKAKAVGDKKLRMEDRFFLEVHYCGNDTD-VHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGASRGLPTGGILNNLLPEQLQSFDAVTVRPRTLPPAGSSASDTAAAGXSSDSTVAAPGLNVESAPEDLKCSGIGRGDGEPSQXXXXXXTAHVLST-CAAGEKASGGGDVDRHEEAGAGSGVTLVAAGTPATNXXXXXXXXXXXXXXXMTITVGHGKSVYELGGVMPDRESVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVDGAKVMLL 1302
            M +K+K+ G   +  +++FF+ V     D +   H++F RLWTVGRA+D ++       R     +A  L   R+ +     T  I++     +L+ FD V +   +   A     D +      D          E A    K     + D    Q       A +    C     +S GG +     A      +L+   +PA                  T  V  GK +Y +  +  +  +VLDLK +LE +TG+P  +QKLL+KGIL+D   I  T +  GAKV+L+
Sbjct:    1 MKIKSKSAGPAGVLNDNKFFVLVQLKTPDINWERHMYFPRLWTVGRAIDYVISFLSEEYRRAILGKALELYCERINSIVSKDT--IIHG---SKLEEFDTVIL---SFAGAFDLLLDGSCLDGEPDEKKQTSYAEHEGATRQSKMDKSIKADNGGEQTILASRDAKLNDEKCLI--SSSSGGPLSLQMNAD-----SLIPPSSPAHESNPGTSS--------FTFYVKVGKEMYSVADLDENANTVLDLKVKLEQLTGIPVQQQKLLYKGILQDSQVICGTAVKAGAKVILM 269
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: AN1-type (zinc finger protein 1-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE2900F)

HSP 1 Score: 60.8 bits (146), Expect = 9.710e-7
Identity = 54/204 (26.47%), Postives = 84/204 (41.18%), Query Frame = 1 
Query:    1 MAEFG--AKLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEYLASRMDEGGRTAAPGSHPLSLSKPSEVMSAVTSRFDGREKELNAATTHFNIKTSEGEA---GEGSAGAPDRLLKNSQLAMD-----KAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDI 582
            MAEF      CS+P CRQ DFLP  C  C + FC++H +    H C    +        G  +           K  E+     S        +    TH + K  +  +   G+   G     +KN  L  +     K  T+K K+ + +V  M LK  A+G K +  +DR F ++     +     ++ S+ W+ G+ALD I
Sbjct:    1 MAEFTDIGSQCSFPSCRQLDFLPVKCNYCEENFCTEH-SFPEKHECPNFSQQEIKEKSHGPVSPLYFKCQFKDCKEKEIAEICCSMCH-----ITTCLTHRHPKDHDCPSNVPGKDPLGDTKEHIKNLNLESEEVKKRKLRTDKAKKTAARVQLMKLKMNAIGAKSIPTDDRIFFKIVLPKKNP--LSVYVSKDWSWGKALDSI 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: AN1-type (zinc finger protein 1-like isoform X4 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001894C229)

HSP 1 Score: 59.3 bits (142), Expect = 1.880e-6
Identity = 56/202 (27.72%), Postives = 86/202 (42.57%), Query Frame = 1 
Query:   19 KLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEYLASRMD-EGGRTAAPGSHPLSLSKPSEVMS----------AVTSRF--DGREKELNAATTHFNIKTSEGEAGEGSAGAPDRLLKNSQLAMDKAATEKGKRVST--QVHRMLLKAKAVGDKKLRMEDRFFLEVHYC-GNDTDVHHLFFSRLWTVGRALD 576
            K C    C + DFLP+ C  C+  FCSDH      H CDQ + ++ S  + +  RT        S     E+             V  R   D + K L +   H  + T              ++L++ + A +K  + K     T  +V  M +K  A G+K + + DR + EV++  G+        FS+LWTVGRA+D
Sbjct:    9 KHCHVESCNRLDFLPFECVHCKNTFCSDHRT-SDAHVCDQVQTHILSDKEAKCSRTGTLFGCTFSECTQKELTPIACGLCAANFCVRHRHAQDHKCKCLQSQAEHMPLTTK----------VVQKILESKKPA-EKTMSSKASISPTAQKVKLMKMKMHAAGEKNVPLADRVYFEVYFPKGHKVRSKPYHFSKLWTVGRAID 198
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: AN1-type (zinc finger protein 1-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E141B)

HSP 1 Score: 59.7 bits (143), Expect = 2.380e-6
Identity = 58/202 (28.71%), Postives = 95/202 (47.03%), Query Frame = 1 
Query:   19 KLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQ------GEEYLASRMDEGGRTAAP---GSHPLS--LSKPSEVMSAVTSRF--DGREKELNAATTHFNIKTSEGEAGEGSAGAPDRLLKNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHY-CGNDTDVHHLFFSRLWTVGRALDDI 582
            K C++  C+Q DFLP+AC  C   FCSDH    + H C Q      G EY  +R    G T +    G+  L+  + +  ++   ++ R   D    +L   T +   KT+E    +  A  P  ++K S+++       K  + + +V  M +K  A GD      +R +L ++  C    D   +FFS+ W+VGRA+D +
Sbjct:    9 KHCNFEQCKQLDFLPFACDGCGNTFCSDHRTKDA-HSCSQHLLSSSGCEYTGAR----GYTCSLSDCGNRELTEIICEKCQLSFCLSHRHAQDHSCSKLMEETANTVSKTAE-HVHQIIASKP-AVVKKSRMSA------KSSKTAAKVALMKMKLHAKGDTGCPETERVYLRIYPPCQCKKDPQPMFFSKTWSVGRAVDSV 197
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: Zinc (finger AN1-type containing 1 n=2 Tax=Monotremata TaxID=9255 RepID=F7E585_ORNAN)

HSP 1 Score: 58.9 bits (141), Expect = 4.280e-6
Identity = 60/201 (29.85%), Postives = 82/201 (40.80%), Query Frame = 1 
Query:    1 MAEFG-AKLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEYLASRMDEGGRTAAPGSHPLSLSKPSEVMSAVTSRFDGREKELNAATTHFNIKTSEG-EAGEGSAGAPDRLL------KNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYC-GNDTDVHHLFFSRLWTVGRALD 576
            MAE    + C    CR+ DFLP+ C  C  VFC +H +  S H C +      +   E  +     S+P SL K  +    V       EK       H      E  E  +    A  +L+      K  Q A  +    K    + QV  M LK  A GDK L   +R + +V    G+      +FFSR W+VGRA+D
Sbjct:    1 MAELEIGRQCRVERCRRRDFLPFICDGCSGVFCLEHRSRES-HDCPE-----VNIKPERAKADESPSYPCSL-KGCDKRELVPMLCPSCEKHFCLRHRHQADHACEKLEVPKPRMAATQQLVRDIVDSKKGQPACSRRRGVKNSGTAAQVALMKLKMHACGDKSLPQTERIYFQVFLPKGSREQSKPMFFSRTWSVGRAVD 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PMB8_MORIS)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5
Identity = 28/75 (37.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query: 1093 MTITVGHGKSVYELGGVMPDRES---VLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVDGAKVMLLGT 1308
            +++ +    ++YEL     DR+S   +LDLK+ L+ +TGVP  RQKL+FKG++++   +   K+  G+K+ML+G+
Sbjct:    6 LSLQISFKGALYELN----DRDSQSTILDLKQHLQDLTGVPVERQKLMFKGLMKNEQTLSEAKVSQGSKIMLIGS 76
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig829.16435.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Ubiquitin-like1.010e-24286.88domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Ubiquitin-like7.400e-15883.38domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Ubiquitin-like1.520e-1232.76domain-containing protein n=1 Tax=Nannochloropsis ... [more]
AN1-type2.900e-827.86domain-containing protein n=4 Tax=Ixodes TaxID=694... [more]
Hypothetical3.980e-826.37protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
AN1-type9.710e-726.47zinc finger protein 1-like n=1 Tax=Lepeophtheirus ... [more]
AN1-type1.880e-627.72zinc finger protein 1-like isoform X4 n=1 Tax=Rhip... [more]
AN1-type2.380e-628.71zinc finger protein 1-like isoform X1 n=2 Tax=Merc... [more]
Zinc4.280e-629.85finger AN1-type containing 1 n=2 Tax=Monotremata T... [more]
Uncharacterized1.070e-537.33protein n=1 Tax=Mortierella isabellina TaxID=91625... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig829contigE_fasciculatus_S2_contig829:11987..16795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.5
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog130081.XP_005703855.1
Preferred nameZFAND1
Model size1329
KEGG koko:K07059
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044877,GO:0046685,GO:0050896,GO:0051603,GO:0051716,GO:0070628,GO:0070887,GO:0071243,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Exons6
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG3183@1,KOG3183@2759
Ec32 ortholog descriptionAN1-type zinc finger and ubiquitin-like protein
Ec32 orthologEc-27_003310.1
Cds size1329
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig829.16435.1prot_E_fasciculatus_S2_contig829.16435.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig829 11987..16795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.1577244-CDS-E_fasciculatus_S2_contig829:11986..122111696842489.1577244-CDS-E_fasciculatus_S2_contig829:11986..12211Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 11987..12211 -
1696842489.1719406-CDS-E_fasciculatus_S2_contig829:12782..132071696842489.1719406-CDS-E_fasciculatus_S2_contig829:12782..13207Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 12783..13207 -
1696842489.183042-CDS-E_fasciculatus_S2_contig829:13712..138821696842489.183042-CDS-E_fasciculatus_S2_contig829:13712..13882Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 13713..13882 -
1696842489.1924949-CDS-E_fasciculatus_S2_contig829:15539..156951696842489.1924949-CDS-E_fasciculatus_S2_contig829:15539..15695Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 15540..15695 -
1696842489.2101622-CDS-E_fasciculatus_S2_contig829:16047..162411696842489.2101622-CDS-E_fasciculatus_S2_contig829:16047..16241Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 16048..16241 -
1696842489.228786-CDS-E_fasciculatus_S2_contig829:16636..167951696842489.228786-CDS-E_fasciculatus_S2_contig829:16636..16795Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 16637..16795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig829.16435.1

>prot_E_fasciculatus_S2_contig829.16435.1 ID=prot_E_fasciculatus_S2_contig829.16435.1|Name=mRNA_E_fasciculatus_S2_contig829.16435.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=443bp
MAEFGAKLCSYPGCRQHDFLPYACPACRQVFCSDHMAIGSGHRCDQGEEY
LASRMDEGGRTAAPGSHPLSLSKPSEVMSAVTSRFDGREKELNAATTHFN
IKTSEGEAGEGSAGAPDRLLKNSQLAMDKAATEKGKRVSTQVHRMLLKAK
AVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRR
HLRLKAGEEARPLELARVGASRGLPTGGILNNLLPEQLQSFDAVTVRPRT
LPPAGSSASDTAAAGGSSDSTVAAPGLNVESAPEDLKCSGIGRGDGEPSQ
QQQQRQTAHVLSTCAAGEKASGGGDVDRHEEAGAGSGVTLVAAGTPATNA
GGGASKEGGGGGGGMTITVGHGKSVYELGGVMPDRESVLDLKRRLEPITG
VPFLRQKLLFKGILRDGDKIGATKIVDGAKVMLLGTAAAAKK*
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mRNA from alignment at E_fasciculatus_S2_contig829:11987..16795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig829.16435.1 ID=mRNA_E_fasciculatus_S2_contig829.16435.1|Name=mRNA_E_fasciculatus_S2_contig829.16435.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4809bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig829:11987..16795- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGAGTTCGGAGCGAAGTTGTGCTCATACCCTGGCTGTCGCCAACA
CGACTTTCTTCCATATGCTTGCCCAGCATGTCGCCAGGTGTTTTGCTCCG
ACCACATGGCGATCGGCAGCGGGCATCGATGCGACCAGGGAGAGGAGTAC
TTGGCGTCGGTAAGAAGTACATGTAACAAGAGTCTGCTGGGGCGTGACAA
CTACGTACTACTGCTGTAGCCTGCTGATGTGCATCAACGTGTAGGTGTAC
GTCGCACATGTTCAAGCTCTTGCGCTCTGGTGCGTAGCGCGTAAAGGAAT
GTTTGCGCGACATTTACCTTTAGCAGCCTCCACACGAACAAATACTCCGG
GGAAATAGAAAGCAGACTTTACTGCTGTGTCTAGGCTACACTGTACGTGG
GAGTACACGAACATCATCTACTGCACGCAGACCACACATAGACAAAGACA
AGTATGCACCCCAAGAGGCAGGTACAAAGGCACGAGCGCGTATTCGATGT
GTAATGTCAGACTCACGGCTGCGTTGTCACCCATCTCCTTTGGGTGCAAT
GCAGCGAATGGACGAAGGCGGGAGGACCGCTGCTCCAGGGTCACACCCTC
TCTCGCTCAGCAAACCGTCGGAGGTGATGTCGGCCGTCACGTCTCGGTTC
GACGGTCGCGAGAAGGAGCTGAACGCTGCGACGACGCACTTCAATATCAA
GACTTCAGAGGGGGAGGCGGGCGAAGGAAGCGCTGGGGCACCTGACAGGT
GAGAAAGCAAGGACGCCAGGTGTCGACGTTCACGTGCCGCCTGTCACTCG
CGTATTTTGCTGTTGAAGGACTGCTCGCAGGTGCCGATGACCCCCTCCTG
TCATTCCCGCGCACGCCAGAAGAGTAACACTTCGTCTTTAACTACCCAAG
AGCCTCGACTACCCCGCATTCCGGAACCCTGACCTACACCACCGAGGCAC
TTGTTTCTGGAAGTGCCTCCAAGCCGTAGCCGTTGCTGCTATCAACAGAC
GCGGCTCCATTCTTGCGTGTCCTGCCCGAGCAAGCACCCGCCGAGCGGTT
CCAGGTACCCATGACCCCAAACCGGAAACACGCCTACAAAATACACGCAG
GCTGTTGAAGAACTCTCAGCTAGCCATGGACAAGGCGGCCACCGAGAAGG
GGAAGAGGGTGTCGACCCAGGTCCATCGCATGCTTCTGAAGGCGAAAGCG
GTGGGAGACAAGAAGCTGCGCATGGAAGACCGGTTCTTCCTTGAGGTGCA
TTACTGGTGAGCGGTTTCTTACAGAGGATCCAATCACGTGTGCGCACTCT
TTTTTTCCAGGGTTCTTCACCGAGCGTTTTTTTTCTACGGAACGGGGCGG
AGCGGAGCAGTTTGAACCGCGCCGTGAGACTTTTCAATGAAACAACACCG
CTCCGTGACATGAGCAAAAGAAACACTCCGCTCCGTGAGATTTTTGTCCT
CGGTTAAACCGCGCCGCCCCTCCCTCCTGAGGTTTCCCAACAATCCGCAC
AATCGTTTTTTGCACGGAGCGGTTCAAGCTAATCCGTCACATACAGCCTC
GGTTTTTCCACGGAGTCACGGGTTTTGCACGGCGCGTGTCTTACATGAGA
CACGATGTGTGTGCACGGGCTTCCACATAGTCTATGCACCCACATAAAAA
CACGAAAACAAACAAAACAAACAAAAAGTTGCGCACCTGCGTACCCCCCC
ACACACACATTTCCTTTGCATGGACAATAGACAGGACTACGAGCTACCGA
GAGAAGAGAGGGGGGTTGCATGGTTGGGTTCGTGTTACCGTTGTTGGCAG
GCAATGACGCCGGCGACCGTGTCGAGATGGTCATGTTCCTCTATGTCGGA
GCCCGATCTTACTCCGGAGATGAAACATCAGTTGGACCAGATGTATGTCA
CATGAGTTAGGAAGCTGCTTGCAGCCCAGTCTATTGCGAAGGCTAGAGCT
GCAACTGTGCGAGCTGCTCGTGCGGGGGAGCACGTGGCTGTCGAGTTCGA
ATCTAACCGAGTGTAGGAGGGACGTCTGTCTGTACTCGGGCGTAGTGCTC
TCTTGTAGTGAGTGGTGAATAGTACCTGACACGCCTGGTGTTTCCTAACA
CCAGCATGGCGAGTTCAGACAAGAGGGAGACAGAGGCAAATGGGTAAGAG
TTATCGTCTGCTGTCTGGTACGTGTCGCAGGAACGAATAGGTCGAGGAGG
TATCTATATTTGGCAGTGACCCCTCTACCTGGCTACGACTAACTGATGAA
TGTTTTCGTTCGTTTGGGCTGTTCTACGCGTACGGTGTCACGAGCGACCT
CCACACACAGCCCCCACCGTGCACAAAAATCGTTTTTCGAGCATCAAACC
CAACGTACTGCTCGAAGTCGCAGGTACTCCGTCACTATGTACGGATATCC
GAATGATTTCGGAGTTTTTTTCTCGCGGTGCACCGTCGTCAAGGCCTCGG
TTTCGCGCGGGTCATGCTACAAGGGAAATCAAACCGCTCCGTAAATAAAA
CATGCTACGGATTGACCACTCCGTGGCATGAACACGAAAAACCGCTCCGT
GAACATTTCGAAAAGAAAAAAACAGCTCCGCGGAGCGATTCTACTCCGTA
AACAACCAAGTCCCGCGACTGCTCGTCGGCTGCTGCGGCTCAGCGCGTGC
TTTGCTCTCTGCCGATTGATTGTCGTGCAACACGGAGGTATAACCACAAC
AGCGCTAAATTTGATCACAGCGTGTTCTTTTTCTTTTTGCAGCTGTCGTG
TGGATCTTGGCACGAGTTCCTCGTGTCGAGAGTCGAGAGTTGTTCAAGTA
ACTCCCGAGATGCTCCCATCTCTGTACTTCTCTGCCGCCCTGTCCCTGGT
GCCCCACCGGTCTTGGCATTTTTCTTTTTCTGCTCATAAAATCTGCTTCC
GTGTTGTGAACAGTGGCAACGACACGGATGTGCACCACCTGTTCTTCTCC
CGCCTGTGGACGGTCGGCCGAGCTTTGGACGATATATTGAAAACCCGGCG
ACGGCATCTGCGGCTGAAGGCTGGGGAGGAAGCTCGGCCGCTGGAGCTCG
CGCGGGTCGGTGCGAGTCGCGGGCTGCCAACAGGTGGGTGCACGAGAGTG
GTCAGGTGTCTCTTGTCAACGCAAGAAGTCAACGCACGCGTCTTGCTGTG
GCTCGAGAAGAAGAGAGAAATAAAGAGAGAGAGAGAGAGAGACAATAAAT
CGTACACGACTGTATATCACCGCTGCCAGATGCATTGACATCCGTAAGCG
GGAGACCAGGGCTGGTCTGTTCTTCAGGGGTACTTTGGTACACGCAACCT
TGCTGCGTGCGTCAGGTACATCAGGAAATCCGGTTTGACGGTGGCTCTTT
CTCAAGCAACCCCGTGCCTACTTGCTTGAAGGCTGGGTCCGTCGCCTGGG
AAGTGCACTTCCTCCTGCAGCCCCAGCCTGAGCAGCGGGTTCGCGAGCTA
GGCTGCGATGATCATCACCCACCGACTCGACTTGGTGGAGGGTGTTGCTC
GCACGATGACACGTCGTGAAGTTAATGACTAAATCGAACCCCGACACGCG
TGTTGTCGCACGAACGAACTGCACTTTTTTTACCCAAGGGGGGATCTTGA
ACAACCTACTGCCGGAGCAACTGCAGTCGTTCGACGCTGTCACGGTGCGG
CCACGAACCCTACCGCCAGCCGGTTCTTCTGCCTCCGATACCGCGGCGGC
GGGAGGCAGCAGCGACTCCACCGTCGCCGCTCCCGGGTTGAACGTGGAGA
GTGCGCCGGAGGATTTGAAATGCAGTGGTATTGGTCGTGGCGATGGGGAG
CCGTCACAGCAACAACAGCAGCGGCAGACGGCGCACGTTTTGAGCACCTG
TGCCGCAGGAGAGAAGGCATCAGGGGGTGGGGACGTGGACCGGCATGAAG
AGGCGGGTGCCGGTTCGGGCGTGACGTTGGTGGCAGCAGGAACACCAGCG
ACGAACGCCGGCGGCGGAGCTAGCAAAGAAGGAGGCGGAGGAGGAGGGGG
CATGACCATCACGGTGAGTCAAGCGGGTGGAAAATGGTTCTTGTTTTACG
CCCAAGAAGTCTGGAGGAAGTTCCAAGACTTGCGGGAAAAGTCCTCGCCT
TTTCAAGTTGACGCTACTGCTGTATCGAGGACATCCGGTTGTGTGGTGTG
GCGTGACCAAGGGGCAAGGTATTCCTAGCGTCCTGTCGCTCTAGTTACGT
TGGTTTTGTTTTACTGCGGGCGGCCGCTTTGTTTGGTTGTTCTCCCCCCT
GAACATCGCCGTGACCCCAAAGGCTTTCATCCTGTCGAGGGTGGACTCTC
TGACCTATTAATAGACTAAATCCACAAGTCGATCGATCGCCTTGACAATG
CTTGTGTTCATCGCCCTATGTATGCGCGCACTTAGCTCTATGCCCTTGTA
TTGTGTGTCGGTGTGGTAGACGATGCAGCACGCTTGACGAACGTTAGCCG
GCTCGCTCGCAGCGCACGCACTTATCGGTGCGGTTGTTTTGTGTCCCCCA
CCTCGCGTTTGCGAACCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCACG
GGTGCTCCGCCGCCCATGCCTGGCGACGGAACAGGTTGGCCATGGCAAGT
CTGTCTACGAGCTTGGCGGAGTGATGCCCGACCGAGAGAGCGTGCTTGAC
CTCAAGCGACGGCTGGAACCCATCACCGGCGTGCCGTTCCTGCGGCAGAA
GCTCCTGTTCAAGGGCATTTTGCGTGATGGGGACAAGATCGGCGCAACGA
AGATTGTGGATGGGGCAAAAGTCATGCTCCTTGGCACGGCCGCTGCTGCG
AAAAAGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig829:11987..16795-

>mRNA_E_fasciculatus_S2_contig829.16435.1 ID=mRNA_E_fasciculatus_S2_contig829.16435.1|Name=mRNA_E_fasciculatus_S2_contig829.16435.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1329bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig829:11987..16795- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGAGTTCGGAGCGAAGTTGTGCTCATACCCTGGCTGTCGCCAACA
CGACTTTCTTCCATATGCTTGCCCAGCATGTCGCCAGGTGTTTTGCTCCG
ACCACATGGCGATCGGCAGCGGGCATCGATGCGACCAGGGAGAGGAGTAC
TTGGCGTCGCGAATGGACGAAGGCGGGAGGACCGCTGCTCCAGGGTCACA
CCCTCTCTCGCTCAGCAAACCGTCGGAGGTGATGTCGGCCGTCACGTCTC
GGTTCGACGGTCGCGAGAAGGAGCTGAACGCTGCGACGACGCACTTCAAT
ATCAAGACTTCAGAGGGGGAGGCGGGCGAAGGAAGCGCTGGGGCACCTGA
CAGGCTGTTGAAGAACTCTCAGCTAGCCATGGACAAGGCGGCCACCGAGA
AGGGGAAGAGGGTGTCGACCCAGGTCCATCGCATGCTTCTGAAGGCGAAA
GCGGTGGGAGACAAGAAGCTGCGCATGGAAGACCGGTTCTTCCTTGAGGT
GCATTACTGTGGCAACGACACGGATGTGCACCACCTGTTCTTCTCCCGCC
TGTGGACGGTCGGCCGAGCTTTGGACGATATATTGAAAACCCGGCGACGG
CATCTGCGGCTGAAGGCTGGGGAGGAAGCTCGGCCGCTGGAGCTCGCGCG
GGTCGGTGCGAGTCGCGGGCTGCCAACAGGGGGGATCTTGAACAACCTAC
TGCCGGAGCAACTGCAGTCGTTCGACGCTGTCACGGTGCGGCCACGAACC
CTACCGCCAGCCGGTTCTTCTGCCTCCGATACCGCGGCGGCGGGAGGCAG
CAGCGACTCCACCGTCGCCGCTCCCGGGTTGAACGTGGAGAGTGCGCCGG
AGGATTTGAAATGCAGTGGTATTGGTCGTGGCGATGGGGAGCCGTCACAG
CAACAACAGCAGCGGCAGACGGCGCACGTTTTGAGCACCTGTGCCGCAGG
AGAGAAGGCATCAGGGGGTGGGGACGTGGACCGGCATGAAGAGGCGGGTG
CCGGTTCGGGCGTGACGTTGGTGGCAGCAGGAACACCAGCGACGAACGCC
GGCGGCGGAGCTAGCAAAGAAGGAGGCGGAGGAGGAGGGGGCATGACCAT
CACGGTTGGCCATGGCAAGTCTGTCTACGAGCTTGGCGGAGTGATGCCCG
ACCGAGAGAGCGTGCTTGACCTCAAGCGACGGCTGGAACCCATCACCGGC
GTGCCGTTCCTGCGGCAGAAGCTCCTGTTCAAGGGCATTTTGCGTGATGG
GGACAAGATCGGCGCAACGAAGATTGTGGATGGGGCAAAAGTCATGCTCC
TTGGCACGGCCGCTGCTGCGAAAAAGTGA
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