mRNA_E_fasciculatus_S2_contig8285.16431.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8285.16431.1
Unique NamemRNA_E_fasciculatus_S2_contig8285.16431.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.910e-27
Identity = 80/153 (52.29%), Postives = 87/153 (56.86%), Query Frame = 1 
Query:    1 EHLVVGGSXXXXXXXXXGATRIPGRRSASSAMVGTPSSSQQSQDGXXXXXXXXXXXXXXPGPSLQQGSGGGVGGGDVNGGMGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSFKKSKERYLADSQRRRLSAADGIAPPSCRGSGD 459
            EH VV G          GATRI G RSASSAM G  SSSQQ +DG              PG SLQQGSG       V+GGMG MGNSSGDE LTTED YV  S +R+IVEL DT HR+LSFK        D+  R +    G A PSCR SGD
Sbjct:  130 EHFVVDGRGGGNSSSSSGATRIRGCRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXX--XVDGGMGLMGNSSGDEKLTTEDQYVMASLKRSIVELSDTCHRLLSFKMLNH----DAFVRVMGT--GSALPSCRSSGD 274
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.070e-20
Identity = 54/84 (64.29%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:  118 QQSQDGXXXXXXXXXXXXXXPGPSLQQGSG-GGVGGGDVNGGMGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSFK 366
            QQ +DG              P PSLQQGSG GGVG  +V+ GMGFMGNSSGDENLTTEDPYVR S  RAI+EL DT HR+LSFK
Sbjct:   38 QQGEDGNGGRFGWSPSSPTTPAPSLQQGSGRGGVG--NVDYGMGFMGNSSGDENLTTEDPYVRPSLNRAIIELSDTCHRLLSFK 119
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.670e-17
Identity = 60/113 (53.10%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:  178 PGPSLQQGSGGGVGGGDVNGGMGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSFKKSKE----RYLADSQRRRLSAADGI--APPSCRGSGDSRRSSQTETETAL 498
            PGPSLQQ SGGG G  DV+GGMG MG +SGDE+LTTEDPYV  S +RAIVEL+DT HR+LSF+        R +      R   A GI  APP            +TETETA+
Sbjct:  158 PGPSLQQRSGGGDG--DVDGGMGLMGKTSGDESLTTEDPYVLASLKRAIVELYDTCHRLLSFEMLNYDAFVRMMELELHLRCVGAAGIVGAPP------------ETETETAM 256
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-13
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  241 MGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSFK 366
            MGFMGNSSGDENLTTEDPYVR S +RAIVEL DT HR+LSFK
Sbjct:    1 MGFMGNSSGDENLTTEDPYVRPSLERAIVELSDTCHRLLSFK 42
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: EXS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.220e-12
Identity = 60/120 (50.00%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:   52 GATRIPGRRSASSAMVGTPSSSQQ---SQDGXXXXXXXXXXXXXXP-GPSLQQGSGGGVGGGDVN------GGMGFMGNSSG-----DENLTTEDPYVRFSFQRAIVELFDTYHRILSFK 366
            GATRI GRRS+S+ M GT          +D      XXXX     P GPS+  G GG V GG         GG GF+ NS G     DE+ TTEDPYVR S +RAIVEL+DT HR+LSFK
Sbjct:  141 GATRIRGRRSSSNGMGGTAPXXXXXXXGEDENGWGSXXXXMSSSAPSGPSVGSGVGGDVDGGAAKANAGFGGGNGFLSNSGGAGAGDDESATTEDPYVRASLKRAIVELYDTCHRLLSFK 260
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.500e-11
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  241 MGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSFK 366
            MG M N+SGD++LTTEDPYVR + +RAIVEL+DTYHR+LS K
Sbjct:    1 MGVMANTSGDKSLTTEDPYVRAALKRAIVELYDTYHRLLSCK 42
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.170e-5
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  274 NLTTEDPYVRFSFQRAIVELFDTYHRILSFK 366
            N TTEDPYVR S +RAIVEL+DT HR+LSFK
Sbjct:  325 NATTEDPYVRASLKRAIVELYDTCHRLLSFK 355
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8285.16431.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized3.910e-2752.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.070e-2064.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.670e-1753.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.140e-1385.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EXS5.220e-1250.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.500e-1171.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.170e-577.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8285contigE_fasciculatus_S2_contig8285:3259..4255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size500
Hectar predicted targeting categoryother localisation
Exons2
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842488.7993238-CDS-E_fasciculatus_S2_contig8285:3258..36241696842488.7993238-CDS-E_fasciculatus_S2_contig8285:3258..3624Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8285 3259..3624 +
1696842488.809687-CDS-E_fasciculatus_S2_contig8285:4122..42541696842488.809687-CDS-E_fasciculatus_S2_contig8285:4122..4254Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8285 4123..4254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8285.16431.1prot_E_fasciculatus_S2_contig8285.16431.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8285 3259..4254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8285.16431.1

>prot_E_fasciculatus_S2_contig8285.16431.1 ID=prot_E_fasciculatus_S2_contig8285.16431.1|Name=mRNA_E_fasciculatus_S2_contig8285.16431.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=166bp
EHLVVGGSGGGGGGGSSGATRIPGRRSASSAMVGTPSSSQQSQDGNGKGS
GWGPSSSTPPGPSLQQGSGGGVGGGDVNGGMGFMGNSSGDENLTTEDPYV
RFSFQRAIVELFDTYHRILSFKKSKERYLADSQRRRLSAADGIAPPSCRG
SGDSRRSSQTETETAL
back to top

mRNA from alignment at E_fasciculatus_S2_contig8285:3259..4255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8285.16431.1 ID=mRNA_E_fasciculatus_S2_contig8285.16431.1|Name=mRNA_E_fasciculatus_S2_contig8285.16431.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=997bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8285:3259..4255+ (Ectocarpus fasciculatus EfasUO2)
GAACACCTTGTCGTGGGCGGGAGCGGCGGCGGGGGCGGCGGCGGCAGCAG
CGGGGCCACGAGAATCCCCGGACGCAGGTCAGCCTCAAGCGCGATGGTGG
GCACGCCGTCATCTTCACAGCAGAGCCAAGACGGGAACGGAAAGGGTTCC
GGCTGGGGTCCGTCCTCCTCGACACCCCCTGGCCCTTCTCTGCAGCAGGG
GAGCGGTGGTGGTGTTGGTGGTGGGGACGTGAACGGCGGCATGGGCTTCA
TGGGCAACAGCAGCGGCGACGAAAACCTGACCACCGAAGACCCGTATGTG
CGGTTCTCCTTTCAGAGAGCCATCGTCGAGCTGTTCGACACCTACCACCG
GATTCTGTCGTTCAAGGTGGGCGAAGCCGGGGTTGCTTGTTGATGCTTGC
TCTACTAGCTGCACGGTCGACGGCGCGTTATTCTGTCGAGGCAGTATGAG
GCTTCAAACCCTGAGAGACCGCCTCAAATGCCTGGGCGCTGGTTGTTTCC
CCCCCGCATTGGGGGGGGGTACGCAGTGTTGGAACAACCCTGTCCGACAG
TACGTCCTCAAGTATATTCCGTGAGTGCGGTTTAGCTTCCCGTAGGGTGC
GTAAATGAATAACTTTGTGTTTCGGGCCGTTCCATTCAGATTGCCCCGAA
AAGTGTTTGGGGGAGGGCGTGATGCTGGGCAGCCTCCACTGGGTCGGGAA
CATGCCTCAGAGAGATACACTGCCGTGTTGCTCCATGTAGCATCTTTTGT
GTGCGGCGCTCGTGTCACGTTGCACACGCACCAGAGAATGCTGTTTTGTT
TGTGTTTGTTTCGCTGATATACTGCTGCGTCTCAGTGTTCTTCTCTTCTC
CCCCCCCCCCCCAGAAAAGCAAGGAACGATATTTAGCAGATTCTCAACGA
CGACGCCTTTCTGCGGCAGATGGAATTGCACCGCCGTCGTGCCGAGGCAG
CGGGGATAGCCGGCGCTCCTCCCAGACCGAGACCGAGACCGCCTTGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8285:3259..4255+

>mRNA_E_fasciculatus_S2_contig8285.16431.1 ID=mRNA_E_fasciculatus_S2_contig8285.16431.1|Name=mRNA_E_fasciculatus_S2_contig8285.16431.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=498bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8285:3259..4255+ (Ectocarpus fasciculatus EfasUO2)
GAACACCTTGTCGTGGGCGGGAGCGGCGGCGGGGGCGGCGGCGGCAGCAG
CGGGGCCACGAGAATCCCCGGACGCAGGTCAGCCTCAAGCGCGATGGTGG
GCACGCCGTCATCTTCACAGCAGAGCCAAGACGGGAACGGAAAGGGTTCC
GGCTGGGGTCCGTCCTCCTCGACACCCCCTGGCCCTTCTCTGCAGCAGGG
GAGCGGTGGTGGTGTTGGTGGTGGGGACGTGAACGGCGGCATGGGCTTCA
TGGGCAACAGCAGCGGCGACGAAAACCTGACCACCGAAGACCCGTATGTG
CGGTTCTCCTTTCAGAGAGCCATCGTCGAGCTGTTCGACACCTACCACCG
GATTCTGTCGTTCAAGAAAAGCAAGGAACGATATTTAGCAGATTCTCAAC
GACGACGCCTTTCTGCGGCAGATGGAATTGCACCGCCGTCGTGCCGAGGC
AGCGGGGATAGCCGGCGCTCCTCCCAGACCGAGACCGAGACCGCCTTG
back to top