mRNA_E_fasciculatus_S2_contig8285.16430.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8285.16430.1
Unique NamemRNA_E_fasciculatus_S2_contig8285.16430.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8285.16430.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.810e-6
Identity = 53/110 (48.18%), Postives = 62/110 (56.36%), Query Frame = 3 
Query:    3 WAFYRNESDKCASKLSAPPRHLHLPSTAAPPEA----GGDGGCT*RPFPTAA--GGNMSRTNGGXXXXXXXXXXXXXXXXX---VLNGPELQYSS-PVVSTGWVLRPTPQ 302
            WAFYRNESD+CA+KLSA    LH  S +   +     GG GG     F +AA  GG+     G XXXXX               +L+ P+LQYSS PVVSTG VLRPTPQ
Sbjct:  160 WAFYRNESDQCAAKLSA----LHDASASLRHQLHRKLGGMGGVP-EDFSSAAAAGGSGVGYEGXXXXXXAVGDGPGGTAATTASLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8285.16430.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.810e-648.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8285contigE_fasciculatus_S2_contig8285:2596..3256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size395
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842488.744554-UTR-E_fasciculatus_S2_contig8285:2595..26261696842488.744554-UTR-E_fasciculatus_S2_contig8285:2595..2626Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8285 2596..2626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842488.7556214-CDS-E_fasciculatus_S2_contig8285:2626..28971696842488.7556214-CDS-E_fasciculatus_S2_contig8285:2626..2897Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8285 2627..2897 +
1696842488.7668781-CDS-E_fasciculatus_S2_contig8285:3164..32561696842488.7668781-CDS-E_fasciculatus_S2_contig8285:3164..3256Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8285 3165..3256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8285.16430.1prot_E_fasciculatus_S2_contig8285.16430.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8285 2627..3256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8285.16430.1

>prot_E_fasciculatus_S2_contig8285.16430.1 ID=prot_E_fasciculatus_S2_contig8285.16430.1|Name=mRNA_E_fasciculatus_S2_contig8285.16430.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
MRLQAFRPSTTPPPPFDSSSTGSWGGWGVHLKAFSHRGGRQHEQDQWGRR
RRPWHYHDDDDDDYNCPEWPRAAVQQPSRFDWLGAASDPPANTCLRALLS
TSWSFWTVSQHRRPKLCTTAN
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mRNA from alignment at E_fasciculatus_S2_contig8285:2596..3256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8285.16430.1 ID=mRNA_E_fasciculatus_S2_contig8285.16430.1|Name=mRNA_E_fasciculatus_S2_contig8285.16430.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=661bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8285:2596..3256+ (Ectocarpus fasciculatus EfasUO2)
TGTGGGCCTTCTATCGGAACGAGAGTGACAAATGCGCCTCCAAGCTTTCC
GCCCCTCCACGACACCTCCACCTCCCTTCGACAGCAGCTCCACCGGAAGC
TGGGGGGGATGGGGGGTGCACCTGAAGGCCTTTTCCCACCGCGGCGGGCG
GCAACATGAGCAGGACCAATGGGGGCGGCGGCGACGGCCCTGGCACTACC
ACGACGACGACGACGACGACTACAACTGTCCTGAATGGCCCAGAGCTGCA
GTACAGCAGCCCAGTCGTTTCGACTGGCTGGGTGCTGCGTCCGACCCCCC
AGGTGGGATTGGGTTGCGCTTGTGCTGGATGTCTTCTTTTGAGGAGATGA
TTGGACGATGATAGGGTACAGCGTCCACGTGACGGGTGTATCTGCGAAAG
GAGGTACAATATGTAGTGTGAGCGTGTTTTACTTGCTTGTTCCATGCAAT
CGCGTCTACACGCGGACCGACCGTGTTTGCCTATCCCCCCCGTCCTCCCC
CGTCCCCACTTCAGCATCTGCCCTGCATTGGCGTGTATACCTCCCCTCCC
CCGCGCGCGCTCGCCTCAGCGAATACTTGCCTGCGTGCACTGCTGTCAAC
AAGCTGGTCATTTTGGACCGTTTCGCAACACCGTCGACCCAAGCTCTGCA
CGACCGCAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8285:2596..3256+

>mRNA_E_fasciculatus_S2_contig8285.16430.1 ID=mRNA_E_fasciculatus_S2_contig8285.16430.1|Name=mRNA_E_fasciculatus_S2_contig8285.16430.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8285:2596..3256+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCCTCCAAGCTTTCCGCCCCTCCACGACACCTCCACCTCCCTTCGA
CAGCAGCTCCACCGGAAGCTGGGGGGGATGGGGGGTGCACCTGAAGGCCT
TTTCCCACCGCGGCGGGCGGCAACATGAGCAGGACCAATGGGGGCGGCGG
CGACGGCCCTGGCACTACCACGACGACGACGACGACGACTACAACTGTCC
TGAATGGCCCAGAGCTGCAGTACAGCAGCCCAGTCGTTTCGACTGGCTGG
GTGCTGCGTCCGACCCCCCAGCGAATACTTGCCTGCGTGCACTGCTGTCA
ACAAGCTGGTCATTTTGGACCGTTTCGCAACACCGTCGACCCAAGCTCTG
CACGACCGCAAAC
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