mRNA_E_fasciculatus_S2_contig8271.16421.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8271.16421.1
Unique NamemRNA_E_fasciculatus_S2_contig8271.16421.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Pyr_redox_dim (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA61_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.700e-43
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 2 
Query:   38 VQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            V+AVCDL DSQRV+GLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC
Sbjct:   60 VKAVCDLKDSQRVLGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 134
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Thioredoxin (reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA3_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.430e-40
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:   38 VQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            V+AVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC
Sbjct:  699 VKAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 773
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Uncharacterized (protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C460_PARTE)

HSP 1 Score: 104 bits (259), Expect = 2.860e-23
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2 
Query:   38 VQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            V+A+C ++D+ +VVGLH+LGPNAGEVMQGFGV ++LGM + DL++ VGIHPT AEE  LL+ TK SG   EK  C
Sbjct:  450 VKAICHVSDNNKVVGLHYLGPNAGEVMQGFGVAVKLGMKLSDLQRTVGIHPTNAEEFVLLKVTKSSGADFEKHGC 524
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Thioredoxin (glutathione reductase n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MFC1_TETTS)

HSP 1 Score: 102 bits (253), Expect = 2.220e-22
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2 
Query:   32 ALVQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            A  + +C+  D++RVVG+H+LGPNAGEVMQG+GV ++LGMT  DL + VGIHPT AEE T L  TK SGE  EK++C
Sbjct:  512 AYAKVICNKLDNERVVGIHYLGPNAGEVMQGYGVAMKLGMTKADLDRTVGIHPTTAEEFTNLSITKASGEDCEKTSC 588
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAG8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.480e-22
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 2 
Query:   41 QAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            +A+C   DS R+VGLHFLGP+AGEVMQGFG+ + +G+T++ L+  VGIHPT AEELT L  +KR+   +E S C
Sbjct:  162 KAICHTEDSNRIVGLHFLGPHAGEVMQGFGLAMTMGLTLEQLQNCVGIHPTSAEELTKLSVSKRTSATVEASGC 235
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8ENN2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.000e-21
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   41 QAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            + + D  D +RV+G H L PNAGE+ QGFG+G++LGMT  DL +LVGIHPTVAEELTLL   K SG+   KS C
Sbjct:  538 KVIVDTEDDERVLGFHILSPNAGEIAQGFGIGMKLGMTFSDLNRLVGIHPTVAEELTLLTIKKSSGKDAVKSGC 611
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YTN0_CIOSA)

HSP 1 Score: 94.4 bits (233), Expect = 7.540e-21
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 2 
Query:   38 VQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            ++ + +L D+++VVG+H+LGPNAGEVMQGF V ++ GMT + L   +GIHPT AE  TLL TTKRSG  I ++ C
Sbjct:  173 LKVITNLLDNEKVVGIHYLGPNAGEVMQGFAVAMKCGMTKEHLNTTIGIHPTAAETFTLLNTTKRSGGDIAQTGC 247
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Thioredoxin (reductase 1, cytoplasmic (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2V015_ARAVE)

HSP 1 Score: 90.5 bits (223), Expect = 1.140e-20
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2 
Query:   38 VQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            V+ +C + + +RV+G H+LGPNAGEV QGF +GI+LG T  D    +GIHPT AE  T L  TKRSG+  E+S C
Sbjct:   45 VKLICLIPEKERVIGFHYLGPNAGEVTQGFALGIKLGATKADFDATIGIHPTCAEIFTTLSVTKRSGKSTEQSGC 119
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BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Uncharacterized (protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2W8_CAFRO)

HSP 1 Score: 96.3 bits (238), Expect = 2.520e-20
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:   32 ALVQAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            A  + + DL D  RVVGLH+LGPNAGEV QGF   +R+G+T   LR  VGIHPTVAEELT L+ ++ SG PIEK +C
Sbjct:  637 AFAKVIVDLRDD-RVVGLHYLGPNAGEVTQGFAAAMRMGLTFTALRDTVGIHPTVAEELTSLEVSRSSGAPIEKGSC 712
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PPU6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.560e-20
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   41 QAVCDLTDSQRVVGLHFLGPNAGEVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC 262
            + + + +D+  VVG H + PNAGE+ QGFG+G++LGM   D+  LVGIHPT+AEELTLL  TKRSGE   K+ C
Sbjct:  249 KVIVNKSDNDLVVGFHIMSPNAGEITQGFGIGMKLGMKFQDISNLVGIHPTIAEELTLLTVTKRSGESALKTGC 322
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8271.16421.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Pyr_redox_dim1.700e-4396.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Thioredoxin4.430e-4098.67reductase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Uncharacterized2.860e-2361.33protein n=1 Tax=Paramecium tetraurelia TaxID=5888 ... [more]
Thioredoxin2.220e-2259.74glutathione reductase n=1 Tax=Tetrahymena thermoph... [more]
Hypothetical5.480e-2256.76protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical7.000e-2159.46protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Uncharacterized7.540e-2154.67protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H... [more]
Thioredoxin1.140e-2053.33reductase 1, cytoplasmic (Fragment) n=1 Tax=Araneu... [more]
Uncharacterized2.520e-2059.74protein n=4 Tax=Cafeteria roenbergensis TaxID=3365... [more]
Hypothetical2.560e-2055.41protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8271contigE_fasciculatus_S2_contig8271:2012..3861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score101.3
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D8LJA3
Preferred nameTXNRD1
Model size446
KEGG rclassRC02518,RC02873
KEGG koko:K22182
KEGG ReactionR03596,R09372
KEGG Pathwayko00450,ko05200,ko05225,map00450,map05200,map05225
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000302,GO:0000305,GO:0001650,GO:0001704,GO:0001707,GO:0001887,GO:0001890,GO:0003006,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006749,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009069,GO:0009117,GO:0009611,GO:0009628,GO:0009636,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010269,GO:0010941,GO:0010942,GO:0012505,GO:0015036,GO:0015949,GO:0016043,GO:0016174,GO:0016209,GO:0016259,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016999,GO:0017001,GO:0017144,GO:0018996,GO:0019216,GO:0019222,GO:0019362,GO:0019637,GO:0019725,GO:0019752,GO:0022404,GO:0022414,GO:0022607,GO:0023052,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0033797,GO:0034599,GO:0034641,GO:0036295,GO:0036296,GO:0036477,GO:0042221,GO:0042303,GO:0042395,GO:0042493,GO:0042537,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045340,GO:0045454,GO:0046483,GO:0046496,GO:0046688,GO:0046872,GO:0046914,GO:0046983,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048598,GO:0048608,GO:0048646,GO:0048678,GO:0048729,GO:0048731,GO:0048856,GO:0050664,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051259,GO:0051262,GO:0051716,GO:0055086,GO:0055093,GO:0055114,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070276,GO:0070482,GO:0070887,GO:0070995,GO:0071241,GO:0071248,GO:0071280,GO:0071453,GO:0071455,GO:0071704,GO:0071840,GO:0072524,GO:0072593,GO:0080090,GO:0097237,GO:0097458,GO:0098623,GO:0098625,GO:0098626,GO:0098754,GO:0098869,GO:1901360,GO:1901564,GO:1901605,GO:1901700,GO:1990748
Exons3
EggNOG free text desc.thioredoxin-disulfide reductase activity
EggNOG OGsCOG1249@1,KOG4716@2759
EC1.8.1.9
Cds size150
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842487.385667-UTR-E_fasciculatus_S2_contig8271:2011..21231696842487.385667-UTR-E_fasciculatus_S2_contig8271:2011..2123Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8271 2012..2123 +
1696842487.4024687-UTR-E_fasciculatus_S2_contig8271:2416..24191696842487.4024687-UTR-E_fasciculatus_S2_contig8271:2416..2419Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8271 2417..2419 +
1696842487.4470184-UTR-E_fasciculatus_S2_contig8271:3680..38611696842487.4470184-UTR-E_fasciculatus_S2_contig8271:3680..3861Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8271 3681..3861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842487.4195087-CDS-E_fasciculatus_S2_contig8271:2419..25351696842487.4195087-CDS-E_fasciculatus_S2_contig8271:2419..2535Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8271 2420..2535 +
1696842487.4346468-CDS-E_fasciculatus_S2_contig8271:3646..36801696842487.4346468-CDS-E_fasciculatus_S2_contig8271:3646..3680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8271 3647..3680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8271.16421.1prot_E_fasciculatus_S2_contig8271.16421.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8271 2420..3680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8271.16421.1

>prot_E_fasciculatus_S2_contig8271.16421.1 ID=prot_E_fasciculatus_S2_contig8271.16421.1|Name=mRNA_E_fasciculatus_S2_contig8271.16421.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=50bp
MQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTKRSGEPIEKSAC*
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mRNA from alignment at E_fasciculatus_S2_contig8271:2012..3861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8271.16421.1 ID=mRNA_E_fasciculatus_S2_contig8271.16421.1|Name=mRNA_E_fasciculatus_S2_contig8271.16421.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1850bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8271:2012..3861+ (Ectocarpus fasciculatus EfasUO2)
TTGTTTCGTTCGACGCTTTTCTTGCTTGCTTGCTTTGGTTCAGGCCGTGT
GTGATTTAACGGACAGTCAGCGGGTGGTGGGGCTGCACTTCTTGGGTCCA
AACGCCGGCGAGGTGAGCACGACGAGATGCAGGCAGGTGAAAGCATGCAT
AGTGCATTGTTTTTCGTCTGGGCGGACACCGTCAGACACTGCCGAATCGC
ATTTTCCGTCTACATGTAGGCACAAAATATATGAGCATCTGAGGGGGGAA
ATCGTACCTGTTTCAACTTTCTGGACGAAAGCAACGACGATGTTGTTACA
TATGTTGATCTCGCGAAAAATGCGTATGTTGCCCTTCTTGTACTCGAGCG
CGAACGCCTGCTGTGGTGCTGACACCCACCCAAACGGTGCTATTTATAAC
TCAAGGTGATGCAAGGCTTCGGCGTAGGAATCCGCCTGGGCATGACGATG
GACGACTTGCGACAGCTGGTGGGAATCCATCCGACCGTGGCAGAAGAATT
AACCCTCCTTCAGACAACCAAGAGGTGCGTGTGCCGGTGATCTCGGTACA
GTTTACGCCAGCACTATGTGAAGAACCCCCAGGTTTGACCGAAGGGTGGG
CTTCTTGGTCCCTAGGGGTAATATGTATCAAATAGATGTACGTTCTATTT
TTGAAAGGGCTGGTAGCCTCGGGCTCATTAATGGTGCTCAAGCTCTTAGG
TATTGAGTTGTTCGGCGCTCAACTTGCTAGCTGCCAAGTGCTGAAGTGCT
TTACTAGCGCAAACTGTTTTGTAAACAACCCCCATTTTTCGGATCGCATG
CCCAAAACTTCTCCGAAGATTCTTACCGCTGACACTACCCTTACCCTAGC
TTGTGTGGTGGTGGAAATGAAATAACGCCGCCTTAGATTCTGTGGCGGTG
TTTTTGTCTTCTTGTCTTGCCAATATTGTTACTGCTCAAGCATCGGTGGC
ATGTCTACGTAACCTAGACCTTTGCTCTCTTGGAACGAAAGTCCTCCGAA
CGGGGTCACACGGACAAATTTATTTCATGTAGTCTGTATGAGGAAAAATT
GTTTGAACACCTGCTGCAGGATATTGTGCATGCCATCGCAGAAGGACAAC
CTGTACCCGTACGAGATGCTGTCGACATGTGCGTAGATCGACAAAGCCAG
ACATGACGCGCAGGCTCAACAGATTGTTTTGTTATTTTGGCCTCTGTTTG
AGCCCCACGACTGCATACTCCCTTCTACTCTCATGTTGGTCAAGTGAGTT
GGGTTTCTTGAAAGGGGCACGGCCGGTCGGCTGTAAGATCGTGCAATCCG
AAGCAACGAACCCTTGTTTGTGCTGCCCTACAACAGTTCTTCCAACGGGA
CATGCTGTCGGCGACGGTCCGACCAAGACTTGGTGAGCAATACCATGCAA
ACAAGTGTGGAGTACAAAGACTCAAAGACACAAAAAAGTGTTGAACGAAA
CGGACCAATTTTTTTCCCGGCAGAGCATGCGCTTGCTATCTCACTCAGAG
GTACCTGGTGCTACGCCTATTCTTCCCGCGATGCAGGCATTTCAATGCTT
TCGTTCAGACCTCCGTGGTGAAAAAGCTAGCAATCCCCAACATATTTCGC
CGTTTGACACACTGATTTTGATGACGATACTGTAGGTCTGGGGAGCCCAT
CGAGAAGAGCGCCTGCTGAGGCTAGTGCTCCCGCCCTATCAAGCAGGCCC
AGACGAAGAAAATGGACGTTTTCTCCTTGCTGTGCGAAAAACAACGCTGC
GTTTGCGAAACAGCCGGTATCGGCGAAGTGCGCAAAACAATGGTAGCAGT
AGTTCGCTAAACTAGCGTGGAGGGAGGGAGCTTTTTCGTTTAGGCATGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8271:2012..3861+

>mRNA_E_fasciculatus_S2_contig8271.16421.1 ID=mRNA_E_fasciculatus_S2_contig8271.16421.1|Name=mRNA_E_fasciculatus_S2_contig8271.16421.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=150bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8271:2012..3861+ (Ectocarpus fasciculatus EfasUO2)
ATGCAAGGCTTCGGCGTAGGAATCCGCCTGGGCATGACGATGGACGACTT
GCGACAGCTGGTGGGAATCCATCCGACCGTGGCAGAAGAATTAACCCTCC
TTCAGACAACCAAGAGGTCTGGGGAGCCCATCGAGAAGAGCGCCTGCTGA
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