mRNA_E_fasciculatus_S2_contig827.16417.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS44_ECTSI) HSP 1 Score: 756 bits (1952), Expect = 5.190e-262 Identity = 559/770 (72.60%), Postives = 575/770 (74.68%), Query Frame = 1
Query: 1 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGHFFSEYFPKGMSLQQAGIPTANSGDEHMRMGCCSCCWIGARRSPHEDSDASSCDGCCALRCRRLSDLRGDGSAAPLAAAAAAGRRGLGPPAGSTGCSSSEACISRLMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPRLARPKPRRPPSATSAVAGQKNKRLLSLISGLLRYDPDERLTPAQALAHPFFGETLPFAVLPPTAVAASLGQTSGGGRGATAARHRTAEPTPPVQGGHHGDRRQPRGPQPTGAATPRPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARHELXXXXXRRCSGRTTKSPEISSSGSCVAAGASRASPARVVSTSTPSRPHDD--AGSRINGT---PPRPTGST----NSREEAEPTAQLQQLAEMAEVIVKDNSRYSRGRAGGTXXXXXXXXXXSL--------RRNRFLNAALFASLKRESSPTKQPEVPPAVSGTSTEVQRHHXXXXXXXXXXXXXXXXXXRPNRFLTPATLAILKPGLGVTR-QHAGEPAAXXXXXXXXXXXXXAMSKAATPEGEAEVDTAGGYSGLCARRATLASTTKATPPPATAHQDPSSIETVKRLLPEGKKRLSWDTPGEAARRETVVVATQEPEVGGVKPAAAPGEQQEPCATGRKRARRSATDDRARAANKSQVPTTPSRVRER--GRSTTPRRAAMAAEAAIIRLREDDESSDGSLSL 2250
VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGH+FSEYFPKGMSLQ AGIPTANSGDEHMRMGCCSCCWIG RRSP ED D SSCDGCCALRCRRLSD+RGDGSAAPLAAAAA GRRGLGPPAGSTGCSSSEACISRL+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PRLARPKPRRPPSAT+AVAGQKNKRLLSLISGLLRYDPDERLTPAQALAHPFFGETLPF VLPPTAVA LGQTSG XXXXXXXXX ARHE R TTKSPEISSSG V AGA+RASPARVVS +TPSR HDD AGSR NGT PPRPTGS+ NS+EEAEPTAQLQQLAEMAEVI+KDNSRYSRGRAGGTXXXXXXXXXX RRNRFLNA FASLKRESSP +PEVP AVSGT TE QR XXXXXXXX RPNRFLTPATLAILKP LGVTR QHA XXXXXXXXXXXXX S+A EVD AGGYSGLCA+R T AHQDPSS+E V KRLSW+TPGEAARRE VV AT+EPE G VKPAAAP QQEPCATGRKRARRSAT DRARAANK Q PT PSR+RER GRSTTPRRAAM AEAAIIRLREDDESSDGSLSL
Sbjct: 137 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGHYFSEYFPKGMSLQ-AGIPTANSGDEHMRMGCCSCCWIGVRRSPDEDPDVSSCDGCCALRCRRLSDMRGDGSAAPLAAAAA-GRRGLGPPAGSTGCSSSEACISRLIGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRQHSNH--PRLARPKPRRPPSATTAVAGQKNKRLLSLISGLLRYDPDERLTPAQALAHPFFGETLPFEVLPPTAVAPGLGQTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXEPARRRSLPDGNGVVDNGWQRARHEEATTSTHRSGRTTTKSPEISSSGR-VDAGAARASPARVVSMATPSRRHDDNDAGSRTNGTSDVPPRPTGSSSGASNSKEEAEPTAQLQQLAEMAEVIIKDNSRYSRGRAGGTXXXXXXXXXXXXXXXXXXXXRRNRFLNAERFASLKRESSPA-EPEVP-AVSGTPTEEQRXXXXXXXXXXTRGRR-----RPNRFLTPATLAILKPDLGVTRRQHADXXXXXXXXXXXXXXXXXXXSEAR------EVDKAGGYSGLCAQR-TXXXXXXXXXXXXAAHQDPSSMEKV--------KRLSWETPGEAARREAVVAATREPEDGRVKPAAAPSVQQEPCATGRKRARRSATGDRARAANKGQGPTIPSRMRERERGRSTTPRRAAMVAEAAIIRLREDDESSDGSLSL 878
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Match: Protein (kinase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK57_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.500e-13 Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 1 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGHFF 183
VL GCPFG D++ +GV+LLE +LGRPLF TA SRV L QT CALG P FR G F+
Sbjct: 21 VLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 81
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Match: uncharacterized (protein LOC110980534 isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YK66_ACAPL) HSP 1 Score: 65.1 bits (157), Expect = 4.970e-7 Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 1 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGHFFSEY 192
V+ G PFGP +D+W +G IL+EL LG PLF A ++ L+ + + LGP+P++ F+ G F+SE+
Sbjct: 266 VVYGLPFGPEIDMWSLGCILVELYLGEPLFF-AVTKEELLQKMIAVLGPLPVQIFQRGKFYSEF 328
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 2.310e-6 Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 1 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVC 135
VL GCPFGP D + +GV+LLE +LGRPLF TA SR L QT C
Sbjct: 290 VLHGCPFGPPADAYSLGVLLLEAVLGRPLFRTAASRAGLAIQTAC 334
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Match: Protein (kinase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR04_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.160e-5 Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 10 GCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGHFFSEYF 195
G F +D+W +GV+L+EL LGRPLF A S+ +V + + LGP+P R F G F++ YF
Sbjct: 368 GRAFDHKIDMWSLGVLLVELYLGRPLFR-ASSQALMVKRILSVLGPLPARAFVTGKFYTAYF 428
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Match: uncharacterized (protein LOC123535274 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D47BA) HSP 1 Score: 58.9 bits (141), Expect = 3.970e-5 Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLRRFRVGHFFSEY 192
V+ G PFGP +D+W +G IL EL++G+PLF ++ ++ Q LGP P + FR G ++ +
Sbjct: 250 VMYGVPFGPEIDIWSLGCILAELVIGKPLF-LGITKEEIMEQMTSLLGPFPAKIFRRGKYYKTF 312 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig827.16417.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig827.16417.1 >prot_E_fasciculatus_S2_contig827.16417.1 ID=prot_E_fasciculatus_S2_contig827.16417.1|Name=mRNA_E_fasciculatus_S2_contig827.16417.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=749bp MGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCALGPMPLback to top mRNA from alignment at E_fasciculatus_S2_contig827:10898..14164- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig827.16417.1 ID=mRNA_E_fasciculatus_S2_contig827.16417.1|Name=mRNA_E_fasciculatus_S2_contig827.16417.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig827:10898..14164- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig827:10898..14164- >mRNA_E_fasciculatus_S2_contig827.16417.1 ID=mRNA_E_fasciculatus_S2_contig827.16417.1|Name=mRNA_E_fasciculatus_S2_contig827.16417.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2247bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig827:10898..14164- (Ectocarpus fasciculatus EfasUO2)back to top |