mRNA_E_fasciculatus_S2_contig827.16416.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig827.16416.1
Unique NamemRNA_E_fasciculatus_S2_contig827.16416.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig827.16416.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.860e-37
Identity = 103/138 (74.64%), Postives = 110/138 (79.71%), Query Frame = 2 
Query:  134 MASHLQRMRAQIEGHWRNFDSLADMQSGGNEAIIRAIDIFEGARGAFAAEQDARGGVGAVAAAPSMYGARQWEGGWASRGVGAAGAAAXADDXXXXXRRAYVRAEEXXXXXXXXXXXXXXTLQQMVEEVERARACIHT 547
            MASH Q MRAQIEGHWR+FDSLA+MQS GNEAIIRAID+FEGARGAF AEQ+ARG      AAPSM+GA QWEGGWAS          X   XXXXXRRAYVRAEEXXXXXXXXXXXXXX   QM EEVERARACI++
Sbjct:    1 MASH-QGMRAQIEGHWRDFDSLAEMQSRGNEAIIRAIDVFEGARGAFIAEQEARGAGXXXXAAPSMFGAHQWEGGWASGXXXXXXXXXXXXXXXXXXRRAYVRAEEXXXXXXXXXXXXXXXXXQMAEEVERARACINS 137
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BLAST of mRNA_E_fasciculatus_S2_contig827.16416.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS46_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.100e-35
Identity = 104/136 (76.47%), Postives = 108/136 (79.41%), Query Frame = 2 
Query:  134 MASHLQRMRAQIEGHWRNFDSLADMQSGGNEAIIRAIDIFEGARGAFAAEQDARGGVGAVAAAPSMYGARQWEGGWASRGVGAAGAAAXADDXXXXXRRAYVRAEEXXXXXXXXXXXXXXTLQQMVEEVERARACI 541
            MASH Q MRAQIEGHWRNFDSLA+MQSGGNEAIIRAID+FEGARGAF AEQ+ARGG GA AAAPSM+GA QWEGGWAS          X   XXXXXRRAYVRAE XXXXXXXXXXXXXX        VERARACI
Sbjct:    1 MASH-QGMRAQIEGHWRNFDSLAEMQSGGNEAIIRAIDVFEGARGAFIAEQEARGG-GAGAAAPSMFGAHQWEGGWASXXXXXXXX--XXXXXXXXXRRAYVRAEXXXXXXXXXXXXXXXXXXXXXXXVERARACI 132
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig827.16416.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.860e-3774.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.100e-3576.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig827contigE_fasciculatus_S2_contig827:6076..8364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1161
Hectar predicted targeting categoryother localisation
Exons3
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842486.7911623-CDS-E_fasciculatus_S2_contig827:6075..63321696842486.7911623-CDS-E_fasciculatus_S2_contig827:6075..6332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig827 6076..6332 +
1696842486.8031228-CDS-E_fasciculatus_S2_contig827:6642..69271696842486.8031228-CDS-E_fasciculatus_S2_contig827:6642..6927Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig827 6643..6927 +
1696842486.8137288-CDS-E_fasciculatus_S2_contig827:7747..78201696842486.8137288-CDS-E_fasciculatus_S2_contig827:7747..7820Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig827 7748..7820 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842486.8239276-UTR-E_fasciculatus_S2_contig827:7820..83641696842486.8239276-UTR-E_fasciculatus_S2_contig827:7820..8364Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig827 7821..8364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig827.16416.1prot_E_fasciculatus_S2_contig827.16416.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig827 6076..7820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig827.16416.1

>prot_E_fasciculatus_S2_contig827.16416.1 ID=prot_E_fasciculatus_S2_contig827.16416.1|Name=mRNA_E_fasciculatus_S2_contig827.16416.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=205bp
GSISPPHHALGGNEQLAHSSAPSSNLLSAFASFPAQDPCSARLRNGVPPA
EDAGSDRGALAQFRLPCGYAEWRKRSYHPGYRHLRRRSWSLRRGAGRARG
GGSSSSSTKHVRRASMGRGLGIARSRRSRGSSSSRRRRGGGAPCVREGGG
RIGAGSRAAYSERGDAAADGGGGRAGQGLHTYGLGHRGTPRINLLASYHS
VLRQ*
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mRNA from alignment at E_fasciculatus_S2_contig827:6076..8364+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig827.16416.1 ID=mRNA_E_fasciculatus_S2_contig827.16416.1|Name=mRNA_E_fasciculatus_S2_contig827.16416.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2289bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig827:6076..8364+ (Ectocarpus fasciculatus EfasUO2)
GGATCAATTTCCCCCCCACACCATGCCCTTGGGGGAAATGAACAACTAGC
TCACTCTTCCGCCCCCTCTTCTAATTTGCTTTCGGCTTTCGCGTCCTTCC
CCGCCCAAGACCCCTGCTCTGCTCGGCTGAGGAATGGCGTCCCACCTGCA
GAGGATGCGGGCTCAGATCGAGGGGCACTGGCGCAATTTCGACTCCCTTG
CGGATATGCAGAGTGGAGGAAACGAAGCTATCATCCGGGCTATCGACATC
TTCGAAGGTCAGAGAGCGAGCAGAGCAGCAATCAATGTGGCTACTTACGT
CGTAGATGACAAGAAGAGGGAACTGATGCAGCTGTAGACCTAAATAAACC
TCTCCCGCTGCTGCTGCTGTGCACCCCCCCAAAATGAAAAAGGGATACGT
GACGCACGGTATCTACACCGCGGCGCATAGCCGTATGCATATTATCATGT
GCTTGCTTTGGTCTAATGTCTCTCCTGTGGTTGAATCCTCTTGTTGTGGA
CCATCGTCGTCTACCTGTTTGTCTCACACCTGCCCGTAATCGCGTGGCAC
GCATCATCGCCTCCCAGGCGCTCGTGGAGCCTTCGCCGCGGAGCAGGACG
CGCGCGGGGGGGTGGGAGCAGTAGCAGCAGCACCAAGCATGTACGGCGCG
CGTCAATGGGAAGGGGGCTGGGCATCGCGAGGAGTAGGCGCAGCAGGGGC
AGCAGCAGCAGCCGACGACGGCGGGGCGGCGGCGCGCCGTGCGTACGTGA
GGGCGGAGGAAGGATTGGCGCTGGCTCGAGAGCAGCTTACTCGGAACGAG
GAGACGCTGCAGCAGATGGTGGAGGAGGTCGAGCGGGCCAGGGCTTGCAT
ACGTGAGAAGAGGGGAGGGATGGGGTTAGATTCGCTGATGGGTATAATTG
ACTAATGGCGGTAGTCTATATATTGTAGACTATGTAGTATATTTGCATGT
GAGAAAACACTCGTTTTACGATCGCTCGGCGAGGTGACAAGATCGGTTCA
AACGGCATGTAAATGATGTAACGTGCAGCATGTGGACATGTGGACCGAAA
CATGTGTTCCATGAGTAACGTTCTTTGCTTCCTCGGGGGACACCTCGAAG
AAGAAATCGAGTTGGGAGCGGGGTGTCATGCACTCGCTGTGCCGTCCGAG
AATCACCCTGTACCGAATCATGCGCGTGATTTTCGAAGTCGCTCCTCGCT
CCCTCTATCTGTGTGTTGGGGTGTTATTTATCGCAGCCCCTCGTGCCGTC
GACTAATAGACCACGATGGGTCCGAAACCCCCGGCCCTGGTACCTGGTAC
TCGTCTGCCTGCTGCTGGTGTGGTGCTGGTGTGGTGCGGAGGACGGAAAT
ACAAATTAGAAGAACATGGTATACGATTTCGTTCTTAAATTTAATTTACA
GTAAAGCTCTCAAGCCAGCCCCTTCCAGTGCGGTAACCCTCCGACACTAT
GTATTATAATACTAAATAAGCGTATTTTACTGCTGTACTTCGAAGTATGG
TGCGATGCCGACTACTACTACCACAGTGGCCTCGTTGGCTACGGCGTAGT
TCATAGGCACCCCGGTGCGATGACTCCTAAAGGTGTGATACTACTACTAT
TACACCACTATTCGATACCACTGATACTGCACACCATTCGCCTACGGTAT
TTTATCTATTGTTTGAAAGCAGATACGGACTTGGACATCGGGGTACGCCG
CGGATAAATTTACTGGCAAGTTATCATTCCGTTCTCAGACAGTAGTTTTC
CTTGTACACCCCGGTGCGCTACCAGACGCTACTGCCTGCTGCGACGACAG
GCGATGGGTGCGTTCAAGCCGGGTGTTCACCGGAATTGTGCACCCAGAAA
CCACACCTAGACCAAGAGTTTGAGCGAAACGATTTAGCGCAGCAGTTCGC
GGTCCGCTTATGCCGTGCGGTGGCCCTAGCGTTAGGGTTACGGGTTGGGC
TGGGTTGGGTTGTGGGTTGGACACGGTGTGTTGCACATCCCCCAGGTGAG
AAACCCAGGTTCAAGGTGGGGTCGGGCACGGTGTACGACACTTGCCACGT
GAGGAGCCTTGATTCAACGTCCGGTTGGGACCTACATAGAGTCAATACGT
AGCAGGCCGTCAATGCACCTCACAAGATCCACAGAATGTCACGGTTTTGA
TGAGGTTCAATGAAGTAATTAGGAGCGCGCTGAACCATCTTTGGCGAGCG
GAATAGCGGGATAACATTTCTAGTCGACCACCATCATTTGCAGTTGAGCG
CAACGCGCTTGCCGCAAGATGGGCTCAACGGTATATGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig827:6076..8364+

>mRNA_E_fasciculatus_S2_contig827.16416.1 ID=mRNA_E_fasciculatus_S2_contig827.16416.1|Name=mRNA_E_fasciculatus_S2_contig827.16416.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=615bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig827:6076..8364+ (Ectocarpus fasciculatus EfasUO2)
GGATCAATTTCCCCCCCACACCATGCCCTTGGGGGAAATGAACAACTAGC
TCACTCTTCCGCCCCCTCTTCTAATTTGCTTTCGGCTTTCGCGTCCTTCC
CCGCCCAAGACCCCTGCTCTGCTCGGCTGAGGAATGGCGTCCCACCTGCA
GAGGATGCGGGCTCAGATCGAGGGGCACTGGCGCAATTTCGACTCCCTTG
CGGATATGCAGAGTGGAGGAAACGAAGCTATCATCCGGGCTATCGACATC
TTCGAAGGCGCTCGTGGAGCCTTCGCCGCGGAGCAGGACGCGCGCGGGGG
GGTGGGAGCAGTAGCAGCAGCACCAAGCATGTACGGCGCGCGTCAATGGG
AAGGGGGCTGGGCATCGCGAGGAGTAGGCGCAGCAGGGGCAGCAGCAGCA
GCCGACGACGGCGGGGCGGCGGCGCGCCGTGCGTACGTGAGGGCGGAGGA
AGGATTGGCGCTGGCTCGAGAGCAGCTTACTCGGAACGAGGAGACGCTGC
AGCAGATGGTGGAGGAGGTCGAGCGGGCCAGGGCTTGCATACATACGGAC
TTGGACATCGGGGTACGCCGCGGATAAATTTACTGGCAAGTTATCATTCC
GTTCTCAGACAGTAG
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