|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig826.16408.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRB1_ECTSI) HSP 1 Score: 125 bits (315), Expect = 3.140e-28 Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 2
Query: 23 ENSTMLFKRQAIFTDNVGALGGCALAYRG----DEGAN----KITFEDKASFRDNYC--DGEHPAIVEYLDENNIDRNDENKGGGALLAFGPTTVEFQSTAVFKRNLSPSGGAILTGTDATVSFVSDDELITEDNVASATCPDILVNEGSVVQIDGETSSG--EDLCQRS 496
++ST+LF AIF+DNVG G ALA +G D+ A+ K+TFEDKA F+DNY + EY+ DE+KGGGAL A G T+V+FQ+TAVFKRN + GGAIL ++SF+S+ +L+T DNVAS+ C DIL ++ V+ I T SG + LC+R+
Sbjct: 676 DDSTVLFSGLAIFSDNVGGTAGAALASKGSDPDDDDASDVDSKVTFEDKAKFKDNYIIPPRRPTSSSEYV-------VDEDKGGGALAALGVTSVDFQNTAVFKRNEAVKGGAILNS--GSISFLSEAKLVTADNVASSACADILNDDSGVINIGTTTLSGGSDSLCERT 836
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1013 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 465 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842486.1989112-UTR-E_fasciculatus_S2_contig826:21638..22152 | 1696842486.1989112-UTR-E_fasciculatus_S2_contig826:21638..22152 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig826 21639..22152 - |
| 1696842486.2760098-UTR-E_fasciculatus_S2_contig826:24541..24575 | 1696842486.2760098-UTR-E_fasciculatus_S2_contig826:24541..24575 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig826 24542..24575 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842486.2132554-CDS-E_fasciculatus_S2_contig826:22152..22239 | 1696842486.2132554-CDS-E_fasciculatus_S2_contig826:22152..22239 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig826 22153..22239 - |
| 1696842486.227143-CDS-E_fasciculatus_S2_contig826:22854..22963 | 1696842486.227143-CDS-E_fasciculatus_S2_contig826:22854..22963 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig826 22855..22963 - |
| 1696842486.2444-CDS-E_fasciculatus_S2_contig826:23292..23423 | 1696842486.2444-CDS-E_fasciculatus_S2_contig826:23292..23423 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig826 23293..23423 - |
| 1696842486.2555044-CDS-E_fasciculatus_S2_contig826:23943..24033 | 1696842486.2555044-CDS-E_fasciculatus_S2_contig826:23943..24033 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig826 23944..24033 - |
| 1696842486.2660527-CDS-E_fasciculatus_S2_contig826:24493..24541 | 1696842486.2660527-CDS-E_fasciculatus_S2_contig826:24493..24541 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig826 24494..24541 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig826.16408.1 >prot_E_fasciculatus_S2_contig826.16408.1 ID=prot_E_fasciculatus_S2_contig826.16408.1|Name=mRNA_E_fasciculatus_S2_contig826.16408.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=155bp
MLFKRQAIFTDNVGALGGCALAYRGDEGANKITFEDKASFRDNYCDGEHP
AIVEYLDENNIDRNDENKGGGALLAFGPTTVEFQSTAVFKRNLSPSGGAI
LTGTDATVSFVSDDELITEDNVASATCPDILVNEGSVVQIDGETSSGEDL
CQRS* back to topmRNA from alignment at E_fasciculatus_S2_contig826:21639..24575- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig826.16408.1 ID=mRNA_E_fasciculatus_S2_contig826.16408.1|Name=mRNA_E_fasciculatus_S2_contig826.16408.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2937bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig826:21639..24575- (Ectocarpus fasciculatus EfasUO2)
GTTCAACGGGGGAGAGGGGACAGAAAACAGCACGATGTTGTTCAAGCGCC
AGGCCATCTTCACAGACAACGTAGGCGCCTTGGTGAGAACAAATGTGGGA
TCCTCCGTGACGAGTCTCATGCGATAGGCACTGCTGCTATGGTGTTCATC
CATGGGCGCATTCCAGCCTAAGAGTTTTCGTCACAAAAGAGGAGAATTGC
GGACAACAATCGGCAATGCCTTTTTTTACCCCTCTCGACACGGCCATTTG
TTATGCAATGGGCGTACCTGTCCCGGGGAGACATTGGCGTTGGTCGGATG
CTTTTCCTAGTCGACCTGAATCTGAGTGTTTGTAGGTTTCGTTTTGTCAC
TGTCTTGATTTCAACGCCGGGGTTGGGGCTCCGCTGAGATGGATTGCGCA
CGATCTCACAGATCATCATATGGAAGGGACACCAAGCTACAGGACTTACT
TTGTGAGCGCCCTGCAGCCTCTTGGCGAGCAAATACCAACATTGACCCGG
TTCAACTCCACCCCCACTGCATACCATGTGCCCATTTTTTAGGGTGGCTG
TGCTTTGGCTTATAGGGGTGACGAGGGTGCCAACAAGATCACCTTCGAGG
ATAAAGCCAGCTTCAGGGACAACTATTGCGACGTGAGAGTCTTTGCGCTC
TTTTGCTTGTGAGGGCGGATGGCTTGGGTGGCTATGCTCGGGTAAACCCC
CAGCACACCCCAGCTCGCACGGCGTTTCGAGATGGAAAAATGTTGGTGGC
TTTATCGATCAGTGAGAAAATCGGGGCTGGCTGCTGTTACGAGGCCTTCT
TCACCTCACCTTCCGATGTGTTGCTCGTATGCCCCCTCGCCCTCGTTTTT
CGAAGGCAAGCCAGCGTGAGCGTTTTTTTAGCTCAGATTCTCACATGGGC
TATGCCCAGAGCTTTGCCTTTTTTCGTGTCCAAACGCCGCCACCTGGGGT
GAGCGTCGCACTCACATACGCGTCCCGTTGGTTGTTGAGCATAGCAGAGA
GACCGTGAAGCCACCACTCCTCCAACCAGGCAGCAGTGTCGGGCGTTGTA
CGCGTTGTCTCCAATTGGAATGTGTGAACCATCTTGGACTCACCCTAACT
GTTACTTGGCATGGTCGATTTGTGCTGTCGCACTCTTTTTTTGTCGTCAC
AGGGAGAACACCCGGCCATCGTGGAATACCTCGACGAAAACAACATCGAT
CGCAACGACGAGAACAAGGGGGGCGGCGCCCTTCTGGCGTTCGGTCCCAC
CACGGTGGAGTTCCAATCTACAGCCGTCTTTAAGTGAGTCACGCGGGGAG
TCCTGAAGGTTTTCGGGCAGTATCGATATGGGAGTGGCTGCCGGATTCTT
TCTGACCATGTGCTGACTTTTGAGGGAAACATGCATGCCAGTGTTTGTTT
TTGTCTGTTGTTCCAGCGAGAGAACTTGTGAGCTACTGGATGTGAGAAAA
AACAACTCAACACGCGCGAAACGTACTCTTGGCCAGCAGCGGATGTTGAA
TACCATCTCTCTGAGTACAAGATGTTTCGCTCGGCCACTCGCTCCGTTTT
GCATGGCTGCGTTTCTTCGTTTGATTCTGTGTCATTCCTCACGACCTCGA
AACAAATCAAAGGCGAAACTTGTCTCCAAGCGGTGGGGCCATCCTCACCG
GAACCGACGCCACCGTCTCGTTCGTCTCCGACGACGAGCTCATCACGGAG
GACAACGTCGCTTCCGCGACGGTGAGGCAGGCAGAATTATTTTCGGTACA
TAGGGCCCAAGTACTACATACATTATCGTATTACACACCGAAATTCTTCT
GAGGTGGCCGGGATTCGAAAACGTACACTATGGTAGACAGGTTTTTCCAT
GCATATGGTTATGCCTCCGGCCCAGCGGTACGCCCACAAAGCAGATATGC
CAACGAGGCCGTCGTATCTAGCCCTCCTTCATTGCCAGCTGATATAATAC
CCTCTATCTCTCCGCCTACTGTGTCTTTCGAGTAGAATACTGCACATGTC
GTCACTTTTCCGACAACCATGAAGGTGGGGGCAAAGAACGTCCTGTGTGG
CCTTCCTCCACTTTGGGGGCGAGCTAGGGCGTCAAGAACATGCCGAACGG
TGCAAAAAAGTCGATTTCCCGAGTACTTCGGAGTAAACGGGATGGCAGTA
CTGTCGATACACTGCACAGCATGAAAAATATCTCGCCTCCCCCTCCCGAC
TGCATCACCCCTTCGCCTCGAATTGTTTCGTCTGAAAAAACGCCCACAAG
TGTGAAACGCTTACATCTATACAACTTGCCCGTCGCCCCCCCCCCCCCGC
GCCCCTCTTGCTGCATACTCCTCGACCAAACTATAGTGCCCCGACATACT
CGTGAACGAGGGGTCGGTCGTCCAGATCGATGGGGAAACGTCTTCTGGAG
AGGACCTCTGCCAGCGCTCGTAACCAGCAAACTAAAAGCACTCGAGCGAC
TAAATGGATCGCCCCACGGGTTGCCAACTACTCCGGAAATACCCTAGGAC
CGGAGTTTCTCATGTTTCCGTGAAGACTGAGCTACAATGCGTGCTAGGTC
AACCAATCGAACTTGTTGCTTTGACCAGAAAAATAACCTATTTTCTGGAA
CGTATGATTGGCACGAGCATAACTTGGTTTGTCACAAGGGTGGCGTTATC
TTCACAGGCTCCTCTGTGAAACGATTTCTCTAGAAGCAAAATACGAGTCG
GAGGAAGAGGTGAACCATAGCGAGGAGAGGCGGCAGGAAGATCGGCTCCA
CGCCGCCCTTCCCCCTCGAATTTCCTTTCCACGACCGTATAGATGTAGCG
CACAGCCGATAGACTACTCGGTTCGTTCGACTTGAGGCGGGAGAATGAAG
AAGCGAATGAAACAGCGGTTCGTGAGCGTGTGAGAGTAGACAAATTCGAC
ACCGAGCGGTCGGCCTGCAGACGTTGGGCGATTTGAC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig826:21639..24575- >mRNA_E_fasciculatus_S2_contig826.16408.1 ID=mRNA_E_fasciculatus_S2_contig826.16408.1|Name=mRNA_E_fasciculatus_S2_contig826.16408.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=465bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig826:21639..24575- (Ectocarpus fasciculatus EfasUO2)
ATGTTGTTCAAGCGCCAGGCCATCTTCACAGACAACGTAGGCGCCTTGGG
TGGCTGTGCTTTGGCTTATAGGGGTGACGAGGGTGCCAACAAGATCACCT
TCGAGGATAAAGCCAGCTTCAGGGACAACTATTGCGACGGAGAACACCCG
GCCATCGTGGAATACCTCGACGAAAACAACATCGATCGCAACGACGAGAA
CAAGGGGGGCGGCGCCCTTCTGGCGTTCGGTCCCACCACGGTGGAGTTCC
AATCTACAGCCGTCTTTAAGCGAAACTTGTCTCCAAGCGGTGGGGCCATC
CTCACCGGAACCGACGCCACCGTCTCGTTCGTCTCCGACGACGAGCTCAT
CACGGAGGACAACGTCGCTTCCGCGACGTGCCCCGACATACTCGTGAACG
AGGGGTCGGTCGTCCAGATCGATGGGGAAACGTCTTCTGGAGAGGACCTC
TGCCAGCGCTCGTAA back to top
|