mRNA_E_fasciculatus_S2_contig826.16406.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig826.16406.1
Unique NamemRNA_E_fasciculatus_S2_contig826.16406.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig826.16406.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig826contigE_fasciculatus_S2_contig826:12454..13036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842486.0583026-CDS-E_fasciculatus_S2_contig826:12453..125581696842486.0583026-CDS-E_fasciculatus_S2_contig826:12453..12558Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig826 12454..12558 -
1696842486.0697315-CDS-E_fasciculatus_S2_contig826:12874..130361696842486.0697315-CDS-E_fasciculatus_S2_contig826:12874..13036Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig826 12875..13036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig826.16406.1prot_E_fasciculatus_S2_contig826.16406.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig826 12454..13036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig826.16406.1

>prot_E_fasciculatus_S2_contig826.16406.1 ID=prot_E_fasciculatus_S2_contig826.16406.1|Name=mRNA_E_fasciculatus_S2_contig826.16406.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
ECHDKAVSKARCSTKQQRACVQNVPRLPSVEGAVRRGRGINERQGAARCC
RSAQTPDTRTTQELPRHPSIHRLLQRTSTRRPRKFRHG*
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mRNA from alignment at E_fasciculatus_S2_contig826:12454..13036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig826.16406.1 ID=mRNA_E_fasciculatus_S2_contig826.16406.1|Name=mRNA_E_fasciculatus_S2_contig826.16406.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=583bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig826:12454..13036- (Ectocarpus fasciculatus EfasUO2)
GAATGCCATGACAAGGCGGTTAGTAAGGCCAGGTGTAGCACGAAACAGCA
ACGAGCCTGCGTCCAAAATGTGCCCAGACTTCCCTCTGTTGAAGGCGCTG
TCAGGAGGGGAAGGGGGATCAATGAGCGCCAGGGTGCAGCCCGTTGTTGC
CGCAGCGCTCAGGTAAGGAGACATCGTTCGACTACTGTAGTGTATGTTGA
GCGTGTATTGGACAAAACCCAACTAGACTATTGCTACTTTGTCTTTGTCC
TCGTACATGTTTAGATTCCTCACACCCTTCCGTTTGTCGCAATGAACAAA
CATACGACGTATTCAGGATGGCTAGCTTGATCTCAAACGACACCGCGCGT
TTCGGATGTGATAGTCGAAGCAAGTATTGTCTGGCATTCGTGACAACAGT
TGAAACCAAGAACACGCCATCCACTCACCGCCGTAAGAAGCCACCGTCTT
CCAACGGTTTACTTCGCCCACACCGCAGACGCCCGATACCCGTACCACAC
AAGAGCTTCCGCGTCATCCTTCTATCCACCGCCTCCTCCAACGGACAAGC
ACGAGACGACCACGGAAGTTTCGTCATGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig826:12454..13036-

>mRNA_E_fasciculatus_S2_contig826.16406.1 ID=mRNA_E_fasciculatus_S2_contig826.16406.1|Name=mRNA_E_fasciculatus_S2_contig826.16406.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig826:12454..13036- (Ectocarpus fasciculatus EfasUO2)
GAATGCCATGACAAGGCGGTTAGTAAGGCCAGGTGTAGCACGAAACAGCA
ACGAGCCTGCGTCCAAAATGTGCCCAGACTTCCCTCTGTTGAAGGCGCTG
TCAGGAGGGGAAGGGGGATCAATGAGCGCCAGGGTGCAGCCCGTTGTTGC
CGCAGCGCTCAGACGCCCGATACCCGTACCACACAAGAGCTTCCGCGTCA
TCCTTCTATCCACCGCCTCCTCCAACGGACAAGCACGAGACGACCACGGA
AGTTTCGTCATGGGTGA
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