mRNA_E_fasciculatus_S2_contig8254.16404.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8254.16404.1
Unique NamemRNA_E_fasciculatus_S2_contig8254.16404.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8254.16404.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-16
Identity = 65/96 (67.71%), Postives = 69/96 (71.88%), Query Frame = -2 
Query:    6 SKGVAGGSRAGRQKASSPPVQAQGGAKRSGRGDG--GSSAPAEKRSGAPPGSG-ARSVXXXXXXXGGRD---------GSGRRGGEEGADRARKEN 257
            SKG+AGGSRA RQKA+SP VQAQGGAKR GRGDG  GSS PAEKRSGAPPGSG ARSV     XX             GSGR+ GE+ ADRARKEN
Sbjct:  878 SKGIAGGSRASRQKAASPAVQAQGGAKRPGRGDGDGGSSVPAEKRSGAPPGSGGARSVAPAGEXXXXXXXXXXXXXXXGSGRQSGEDAADRARKEN 973
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BLAST of mRNA_E_fasciculatus_S2_contig8254.16404.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.220e-14
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = -2 
Query:   93 SKGVAGGSRAGRQKASSPPVQAQGGAKRSGRGDG--GSSAPAEKRSGAPPGSGA-RSV 257
            SKG+AGGSRA RQKASSP VQAQGGAKR GRGDG  GSSAPAEKRSGAPPGSG  RSV
Sbjct: 1217 SKGIAGGSRASRQKASSPAVQAQGGAKRPGRGDGDGGSSAPAEKRSGAPPGSGGDRSV 1274
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8254.16404.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.180e-1667.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.220e-1486.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8254contigE_fasciculatus_S2_contig8254:5968..6290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.8024-CDS-E_fasciculatus_S2_contig8254:5967..62881696842485.8024-CDS-E_fasciculatus_S2_contig8254:5967..6288Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8254 5968..6288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8254.16404.1prot_E_fasciculatus_S2_contig8254.16404.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8254 5968..6288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8254.16404.1

>prot_E_fasciculatus_S2_contig8254.16404.1 ID=prot_E_fasciculatus_S2_contig8254.16404.1|Name=mRNA_E_fasciculatus_S2_contig8254.16404.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
LPFSFRALSAPSSPPRLPEPSLPPPPSPAGATERAPLPGGAPERFSAGAL
LPPSPLPDRFAPPCACTGGELAFCRPALDPPATPLEAATAAIEAAVEKGG
GAALPPP
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mRNA from alignment at E_fasciculatus_S2_contig8254:5968..6290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8254.16404.1 ID=mRNA_E_fasciculatus_S2_contig8254.16404.1|Name=mRNA_E_fasciculatus_S2_contig8254.16404.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=323bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8254:5968..6290+ (Ectocarpus fasciculatus EfasUO2)
CTACCATTCTCCTTCCGCGCCCTATCCGCCCCCTCTTCACCGCCCCGCCT
ACCCGAACCATCTCTCCCTCCTCCTCCCTCCCCAGCAGGAGCTACGGAGC
GGGCACCACTGCCAGGCGGCGCCCCGGAGCGTTTCTCGGCAGGGGCGCTG
CTACCACCGTCGCCTCTTCCCGACCGCTTCGCCCCACCCTGCGCCTGCAC
CGGCGGCGAACTAGCCTTCTGCCGACCCGCCCTCGACCCGCCGGCGACAC
CTTTGGAAGCCGCGACGGCTGCAATCGAGGCAGCGGTCGAGAAGGGAGGC
GGGGCTGCTCTTCCTCCTCCTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8254:5968..6290+

>mRNA_E_fasciculatus_S2_contig8254.16404.1 ID=mRNA_E_fasciculatus_S2_contig8254.16404.1|Name=mRNA_E_fasciculatus_S2_contig8254.16404.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8254:5968..6290+ (Ectocarpus fasciculatus EfasUO2)
CTACCATTCTCCTTCCGCGCCCTATCCGCCCCCTCTTCACCGCCCCGCCT
ACCCGAACCATCTCTCCCTCCTCCTCCCTCCCCAGCAGGAGCTACGGAGC
GGGCACCACTGCCAGGCGGCGCCCCGGAGCGTTTCTCGGCAGGGGCGCTG
CTACCACCGTCGCCTCTTCCCGACCGCTTCGCCCCACCCTGCGCCTGCAC
CGGCGGCGAACTAGCCTTCTGCCGACCCGCCCTCGACCCGCCGGCGACAC
CTTTGGAAGCCGCGACGGCTGCAATCGAGGCAGCGGTCGAGAAGGGAGGC
GGGGCTGCTCTTCCTCCTCCT
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