mRNA_E_fasciculatus_S2_contig8254.16403.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8254.16403.1
Unique NamemRNA_E_fasciculatus_S2_contig8254.16403.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: BTB (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK4_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 1.220e-85
Identity = 138/151 (91.39%), Postives = 139/151 (92.05%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLAALEEAKRKEKAKSFACRVTIVEGAADGGVAGQGTGGGVG--TARERYGTGYFTLDEDF 447
            + GKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQL ALEEAKRKEKAKSFACRVTIVEGAADG  AGQG        TARERYGTGYFTLDEDF
Sbjct:   37 VGGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLEALEEAKRKEKAKSFACRVTIVEGAADG-TAGQGXXXXXXXXTARERYGTGYFTLDEDF 186          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: BTB/POZ (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP50_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.080e-41
Identity = 89/163 (54.60%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMET-DEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLAALEEAKRKE--KAKSFACRVTIVEG----------AADGGVAGQGTGGGVGTA-RERYGTGYFTLDEDF 447
            + G++F TS  TI   GN MLA+MF      +T D +GF FIDRDG+RF HVLNFLRC SLPSFDEAWRYE IMEEADF+A+EEL++LC  ++    +AK KE  +AKS +CRVTIVE           AA  G    G   G G   RE +GT  FTLDEDF
Sbjct:   12 VGGRRFCTSIETIQGHGNSMLAAMFSNPLYKKTEDAQGFVFIDRDGDRFPHVLNFLRCGSLPSFDEAWRYEAIMEEADFFAVEELKQLCAARVEESAQAKEKEEERAKSMSCRVTIVEAPKPLAAPLAVAALTGELDPGPQWGTGVPPREAFGTFEFTLDEDF 174          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0D8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.480e-25
Identity = 51/119 (42.86%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLAALEEAKRKEKAKSF-----ACRVTIV 342
            + G K+ TSR T+MQ  + MLA MF G + +  DE G+AFIDRDG RFRH+LN+LR  ++P+F++ WR++E++EEADF+ + +LR+L E +++ ++  + +E+A+        C+V I+
Sbjct:   34 VGGVKYHTSRGTLMQCPSSMLARMFSGTWTVHEDE-GYAFIDRDGTRFRHILNYLRNRTVPAFEDEWRFQEVLEEADFFGLPDLRDLVEAKISQMKAQRAEERAEDAKSSGQVCQVMIL 151          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: Potassium (channel tetramerisation domain-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y739_GALSU)

HSP 1 Score: 77.0 bits (188), Expect = 6.770e-15
Identity = 33/84 (39.29%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEEL 252
            + GK F T+  T+ +  + ML++ F GK+++  DE G+ F+DRDG+RFRH+LN+LRC ++   ++     EI+EEA+++ ++ L
Sbjct:   13 VGGKYFETTVDTLTKYSDSMLSAWFSGKYSVLKDENGYVFLDRDGDRFRHILNYLRCGTVHIGEDIRLLGEILEEAEYFGLQSL 96          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: Ofus.G08467 (protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TZ96_OWEFU)

HSP 1 Score: 76.3 bits (186), Expect = 5.850e-14
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLAALEEAKRKE 306
            + G  + T+R T+    N M+ +MF G  +   DE G  FIDRDGE F++VLNFLR S+L   D    Y  ++ EADFY I+ L +L    +  ++E K+KE
Sbjct:   29 VGGVIYTTTRLTLTTYPNTMIGAMFNGNMSNTKDEHGRIFIDRDGELFKYVLNFLRSSTLSLPDGFKDYSSLLAEADFYQIQPLTDLVRNIIQEIDEEKKKE 130          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3THN5_EMIHU)

HSP 1 Score: 77.8 bits (190), Expect = 7.150e-14
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSS--LPSFDEAWRYEEIMEEADFYAIEELRELC-----ERQLAALEEAKR 300
            I G +F TSR+T+  A   MLA+MF G+  + TDE+G+ FIDRDG  F H+LNFLR     LP  + A R  E++ EADFY    L E+      ER+L AL  A R
Sbjct:   86 IGGHRFTTSRTTLC-ARESMLATMFSGRHQIATDEDGYTFIDRDGRNFHHILNFLRTGEIMLPETEAARR--ELLAEADFYQFTALLEIFGRGRFERELGALNVAMR 189          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: Putative (FH protein n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=W8SZD1_9ROSA)

HSP 1 Score: 75.5 bits (184), Expect = 9.520e-14
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAG-NCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAI 243
            + GKKF T+  T+ Q   + MLA+MF G+  +  D++G+ FIDRDGE FRH+LN+LR   +P   EA +Y E+++EA +Y +
Sbjct:   15 VGGKKFSTTVDTLTQRQPDSMLAAMFSGRHTLRQDKKGYVFIDRDGEHFRHILNWLRDGEIPKL-EASQYAELVKEAKYYQL 95          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: FH (protein interacting protein FIP2-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GMK0_9ROSA)

HSP 1 Score: 75.5 bits (184), Expect = 1.010e-13
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAG-NCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAI 243
            + GKKF T+  T+ Q   + MLA+MF G+  +  D++G+ FIDRDGE FRH+LN+LR   +P   EA +Y E+++EA +Y +
Sbjct:   15 VGGKKFSTTVDTLTQRQPDSMLAAMFSGRHTLRQDKKGYVFIDRDGEHFRHILNWLRDGEIPKL-EASQYAELVKEAKYYQL 95          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: FH (protein interacting protein FIP2-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010A9FBA1)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-13
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAG-NCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAI 243
            + GKKF T+  T+ Q   + MLA+MF G+  +  D++G+ FIDRDGE FRH+LN+LR   +P   EA +Y E+++EA +Y +
Sbjct:   15 VGGKKFSTTVGTLTQRQPDSMLAAMFSGRHTLRQDKKGYVFIDRDGEHFRHILNWLRDGEVPKL-EASQYAELVKEAKYYQL 95          
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SCY6_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.750e-13
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCS----SLPSFDEAWRYEEIMEEADFYAI 243
            + G KF TS  T+    N  L S+F G+F +  D++G  FIDRDG  FRH+LNFLR       L +  +A R EEI+EEA+FY +
Sbjct:   48 VGGHKFTTSLQTLTAMPNTYLESLFSGRFELNLDDDGVYFIDRDGTHFRHILNFLRTYPRRLDLRTMPQAQR-EEILEEAEFYGM 131          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8254.16403.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
BTB1.220e-8591.39domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
BTB/POZ4.080e-4154.60protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.480e-2542.86protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Potassium6.770e-1539.29channel tetramerisation domain-like protein n=1 Ta... [more]
Ofus.G084675.850e-1441.18protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID... [more]
Hypothetical7.150e-1446.73protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID... [more]
Putative9.520e-1445.12FH protein n=1 Tax=Pyrus x bretschneideri TaxID=22... [more]
FH1.010e-1345.12protein interacting protein FIP2-like n=1 Tax=Pyru... [more]
FH1.270e-1345.12protein interacting protein FIP2-like n=1 Tax=Malu... [more]
Hypothetical2.750e-1345.88protein (Fragment) n=1 Tax=Mantoniella antarctica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8254contigE_fasciculatus_S2_contig8254:554..2284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score263.5
Seed ortholog evalue6.2e-68
Seed eggNOG ortholog2880.D7FYK4
Model size450
KEGG koko:K21919,ko:K21922
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein homooligomerization
EggNOG OGsKOG2716@1,KOG2716@2759
Ec32 ortholog descriptionBTB/POZ-like
Ec32 orthologEc-02_004350.1
Cds size450
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.8307972-CDS-E_fasciculatus_S2_contig8254:553..6861696842485.8307972-CDS-E_fasciculatus_S2_contig8254:553..686Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8254 554..686 +
1696842485.8418002-CDS-E_fasciculatus_S2_contig8254:1057..11821696842485.8418002-CDS-E_fasciculatus_S2_contig8254:1057..1182Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8254 1058..1182 +
1696842485.8516743-CDS-E_fasciculatus_S2_contig8254:2092..22841696842485.8516743-CDS-E_fasciculatus_S2_contig8254:2092..2284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8254 2093..2284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8254.16403.1prot_E_fasciculatus_S2_contig8254.16403.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8254 554..2284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8254.16403.1

>prot_E_fasciculatus_S2_contig8254.16403.1 ID=prot_E_fasciculatus_S2_contig8254.16403.1|Name=mRNA_E_fasciculatus_S2_contig8254.16403.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=150bp
IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRH
VLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLAALEEAKR
KEKAKSFACRVTIVEGAADGGVAGQGTGGGVGTARERYGTGYFTLDEDF*
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mRNA from alignment at E_fasciculatus_S2_contig8254:554..2284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8254.16403.1 ID=mRNA_E_fasciculatus_S2_contig8254.16403.1|Name=mRNA_E_fasciculatus_S2_contig8254.16403.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1731bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8254:554..2284+ (Ectocarpus fasciculatus EfasUO2)
ATCAGGGGCAAGAAGTTTCTGACGTCGCGGTCGACCATCATGCAGGCCGG CAACTGCATGCTGGCCTCCATGTTCAGAGGAAAGTTCAACATGGAGACAG ACGAGGAAGGGTTCGCCTTCATCGACCGCGACGGTGGGTACGGACGGTGG CGTACTGCTGCTGAAGCGTGGTGTATCGTAGCTCCCTGATGGTTGATAGC CTGCCGATGCGGATACACCTTCTTAGTCCAGACGGTTGTGTTGGTTATCC CGAGGGTGTAAACGTAAGACGACAGCAGCAGAGAGAGGCAACCAGCAACG ACAACATTCTTGTTGAAGACGCCCGCCAACCGGATTGCAAGCACAACTCC CGTGTCAAAGTCGTTCCGAGAGTGCCTTGCACCTCCCCCCCTCTCTCACT GACCTTTCTCTCTATTTCTCCCCTTCCCCACTCTCTCCCCCTCTCTTCCC TCCCTCCCTCCCTTCTCTCCCTTCTCTCCCCTCTCTCTCCTCCCTCATCT CCAGGAGAGAGGTTTCGGCACGTGCTCAACTTCCTCCGTTGCTCGAGCCT CCCTTCCTTCGACGAAGCCTGGCGGTACGAGGAAATCATGGAGGAGGCAG ACTTCTACGCGATCGAGGAACTCAGGGAGGTGAGAAAACAAGACCGTCAA GACCATCGGCAAAGCACCTTGGTTCATTGGTCGCTGCTTTGTGGTGCTTC CTTGACGGGTTTGTGATCGCAACCCGATATTTCGTTGACAGGGGTTGAAT TTCCACAGCAAGTGAGGGGAATGAGTAGAGGCTAGGGCTGTTGTTGTTGC GAAGAGAACAACACCCACGACGACACAGTCCGATTGGATTTGCAGTTGTG CCAGGGTAGAAGTAATGTGTATCTGTTGCGGATGTCAAGTATAGCAGGGC GAGAGGATTCACACCATCACGAGTCTTGCGGGAAGCCACTACGATAGTTT AACGTTTTGAGTTCAACACGTTTTGAAACGGGTGATCGATCGATCGCCTC CGTCACGCAACGGGGTTGATCAAACGATTTTCTGGCATCTATGCATAGCT GAGGCGTTGAGTACCGCAACAGAGTACCACGAGCAACACCTAAGCCAAGA GGATCATTTCATTTCATGTCAAGGCTGTCTGCGGGAGTGTCTTGAGGCTT TTGTGTCCCTCCCTCTCTCTTCTTGTACTGCAGGAAGTTTTGTTGAACGT CGCAATAAGAGTCGGTCAGTGCCTGGTCATATGCCTTGGCTAGTTGATAG CCCAACATTCCCCCTCTTGTGTTGATGCCTGAGGTAAATTGAAGGCATTG ATACCCACGTCTACGTACTGCTGTAGAACCGAACAACGGCTGCCAATCCA ATGCGCCCGTCTGCTGAGTTACGCGAAAACATGCATGAAGAGATCTTCAA CAACTCTTACGCGGTTGAAACCCGGAACGACTTGGTTCATCCTGCTGTGC ACTTCCAATCCCCGCACCCCCGCAAGCCTTCTATTTACACCACCACCACC ACCGCTTCCTAATGCTGCTATTGTTTTTATGTTTTGCAGCTTTGTGAGAG ACAACTCGCGGCCCTCGAAGAAGCGAAGCGAAAGGAAAAGGCCAAGTCGT TCGCGTGCAGGGTCACGATAGTGGAGGGAGCGGCGGACGGAGGCGTCGCC GGCCAGGGGACGGGGGGCGGCGTTGGAACGGCGAGGGAGCGCTACGGAAC CGGATACTTTACCCTCGACGAGGACTTCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8254:554..2284+

>mRNA_E_fasciculatus_S2_contig8254.16403.1 ID=mRNA_E_fasciculatus_S2_contig8254.16403.1|Name=mRNA_E_fasciculatus_S2_contig8254.16403.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=450bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8254:554..2284+ (Ectocarpus fasciculatus EfasUO2)
ATCAGGGGCAAGAAGTTTCTGACGTCGCGGTCGACCATCATGCAGGCCGG
CAACTGCATGCTGGCCTCCATGTTCAGAGGAAAGTTCAACATGGAGACAG
ACGAGGAAGGGTTCGCCTTCATCGACCGCGACGGAGAGAGGTTTCGGCAC
GTGCTCAACTTCCTCCGTTGCTCGAGCCTCCCTTCCTTCGACGAAGCCTG
GCGGTACGAGGAAATCATGGAGGAGGCAGACTTCTACGCGATCGAGGAAC
TCAGGGAGCTTTGTGAGAGACAACTCGCGGCCCTCGAAGAAGCGAAGCGA
AAGGAAAAGGCCAAGTCGTTCGCGTGCAGGGTCACGATAGTGGAGGGAGC
GGCGGACGGAGGCGTCGCCGGCCAGGGGACGGGGGGCGGCGTTGGAACGG
CGAGGGAGCGCTACGGAACCGGATACTTTACCCTCGACGAGGACTTCTGA
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