mRNA_E_fasciculatus_S2_contig8251.16400.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: MSP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE) HSP 1 Score: 248 bits (632), Expect = 1.660e-73 Identity = 125/144 (86.81%), Postives = 130/144 (90.28%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRT--------EIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSP+FSV+ R+ + KVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRA LDFPDQ +
Sbjct: 42 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPHFSVSGPRSPQKLKALKQTKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAALDFPDQKAY 185
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Hydrocephalus-inducing (protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI) HSP 1 Score: 244 bits (622), Expect = 3.670e-72 Identity = 125/152 (82.24%), Postives = 130/152 (85.53%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRT-------------------EIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQ 399
PRIVEFLNLEDNTSA+TSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSP+FSV+ R+ +KVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQ
Sbjct: 98 PRIVEFLNLEDNTSAITSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPHFSVSGPRSPHKLKALKQTKRLTETLYVRMKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQ 249
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI6_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.030e-42 Identity = 77/145 (53.10%), Postives = 105/145 (72.41%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKR--------TEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACFT 411
PRIVE L++ ++ V S V L EPLF+P+PS + FEGY+AF + ++VL RNNDSVNRR+K+L ++SP F+V+ R ++ K+APGMEVC+VVTF+PQE+ Y+ EL+V TEREKF+VPV A G A LD PD+ F+
Sbjct: 80 PRIVELLDVAASSVVVKSAVPLSEPLFRPYPSTITFEGYDAFNEVEQVLYLRNNDSVNRRVKVLAVESPYFTVSGPRRPGTLTQLSQSKIAPGMEVCFVVTFRPQEIEPYAAELVVATEREKFIVPVRATGRSAALDLPDRIAFS 224
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N684_9CHLO) HSP 1 Score: 141 bits (355), Expect = 1.170e-38 Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRTEIK---------VAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
PRI+E LN+ D T+ S V +D+P+FQP PS++ F GYE F + + +LC RNND RR+K+LPL+SP FS+ + + + K VAPGMEV Y +TF P+ V+L+V TEREK++VP+ A+G R LDFPD+ F
Sbjct: 48 PRIIELLNMADFTNQTESAVDVDQPIFQPFPSQIEFFGYEPFKKYEALLCLRNNDKFGRRVKVLPLNSPYFSIAAAKKKGKSGHEEESGKVAPGMEVQYKITFSPKTTDDCGVDLIVATEREKYIVPIRAIGVRGALDFPDEIIF 192
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS6_9STRA) HSP 1 Score: 140 bits (352), Expect = 8.370e-36 Identity = 76/136 (55.88%), Postives = 90/136 (66.18%), Query Frame = 1
Query: 4 RIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTS-KRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
R VE L LEDNTS + STV +D PLF+P P+ V F GYE F K L FRN D V RR+K+LP SP F ++ KR KVAPGMEV + VTF+PQEVR YSV+L+ TEREKF+V V A G R L P + F
Sbjct: 22 RPVELLCLEDNTSQINSTVPIDVPLFKPTPATVHFSGYEPFSTVTKTLRFRNGDYVARRIKVLPPKSPYFEISGGKRAASKVAPGMEVVFEVTFRPQEVREYSVDLVCCTEREKFIVQVKAAGFRPRLSLPSEVNF 157
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4DC66_9CHLO) HSP 1 Score: 137 bits (346), Expect = 5.390e-35 Identity = 73/140 (52.14%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSV----TSKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
PRI+E LN+ D + V V +DEP+FQP P V F YEAF L RNND+V+RR+K+LP++SP FSV + + + KVA GMEV +VVTF+P+ YS +L+V TEREKFVVPV A+G A LDFPD F
Sbjct: 63 PRIIEHLNIADFSHHVECKVPVDEPIFQPFPPEVTFHNYEAFQTYDATLYLRNNDNVSRRVKVLPMESPYFSVRRVAATGKDDSKVATGMEVAFVVTFRPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVEF 202
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E6E5_CHLRE) HSP 1 Score: 137 bits (345), Expect = 7.350e-35 Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSV------TSKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
PRI+E LN+ D + V V +DEP+FQP P V F YE F + L RNND+V+RR+K+LP+DSP FSV + + + KVA GMEV + VTFKP+ YS +L+V TEREKFVVPV A+G A LDFPD F
Sbjct: 61 PRIIEHLNIADFSHHVDCKVPIDEPIFQPFPPEVTFHNYEPFQTYEATLYLRNNDNVSRRVKVLPMDSPYFSVRRAAPPAAGKEDNKVATGMEVAFTVTFKPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVDF 202
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GI42_GONPE) HSP 1 Score: 135 bits (340), Expect = 3.460e-34 Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSV----TSKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
PRI+E LN+ D + V V +DEP+FQP P V F YE F + L RNND+V+RR+K+LP++SP FSV + + + KVA GMEV + VTF+P+ YS +L+V TEREKFVVPV A+G A LDFPD F
Sbjct: 94 PRIIEHLNIADFSHHVECKVPVDEPIFQPFPPEVTFHNYEPFQTYEATLYLRNNDNVSRRVKVLPMESPYFSVRRVQAAGKEDSKVATGMEVAFTVTFRPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVDF 233
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSJ4_9CHLO) HSP 1 Score: 134 bits (337), Expect = 8.780e-34 Identity = 70/146 (47.95%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVT----------SKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
PRI+E LN+ D + V V +DEP+FQP P V F YE F + L RNND+V+RR+K+LP+DSP FSV + + + KVA GMEV + +TF+P+ YS +L++ TEREKFVVPV A+G A LDFPD F
Sbjct: 64 PRIIELLNIADFSHHVECKVPVDEPIFQPFPPEVTFHNYEPFQTYEATLYLRNNDNVSRRVKVLPMDSPYFSVRRAASGPGVVGASKEDSKVATGMEVAFTITFRPESRDDYSCDLIICTEREKFVVPVLAVGASAALDFPDCVDF 209
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN) HSP 1 Score: 133 bits (335), Expect = 1.630e-33 Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 10 VEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRT--------EIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
+E L LEDNT+ V S+V +D PLFQP+P+ V F Y F ++ L FRNND V RR+K+L SP F V+ + KVA GMEVC+VV F+PQEVR Y V+L+ TEREKF+VPV A G RA L P++ F
Sbjct: 20 IELLCLEDNTTQVHSSVGIDTPLFQPYPTEVRFRDYAPFSCIERTLRFRNNDHVARRIKVLQPKSPYFEVSGPHARGKDVTLKQSKVATGMEVCFVVKFRPQEVREYKVDLVCCTEREKFIVPVRAFGLRAALSLPEEVDF 160 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8251.16400.1 >prot_E_fasciculatus_S2_contig8251.16400.1 ID=prot_E_fasciculatus_S2_contig8251.16400.1|Name=mRNA_E_fasciculatus_S2_contig8251.16400.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCback to top mRNA from alignment at E_fasciculatus_S2_contig8251:2639..3387+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8251.16400.1 ID=mRNA_E_fasciculatus_S2_contig8251.16400.1|Name=mRNA_E_fasciculatus_S2_contig8251.16400.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8251:2639..3387+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8251:2639..3387+ >mRNA_E_fasciculatus_S2_contig8251.16400.1 ID=mRNA_E_fasciculatus_S2_contig8251.16400.1|Name=mRNA_E_fasciculatus_S2_contig8251.16400.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8251:2639..3387+ (Ectocarpus fasciculatus EfasUO2)back to top |