mRNA_E_fasciculatus_S2_contig824.16389.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig824.16389.1
Unique NamemRNA_E_fasciculatus_S2_contig824.16389.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig824.16389.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N8_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.350e-53
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 CGVTSGGRGRRSLAGLRSLALTLKAAPPRLVVLDLGHNFIDDSAIEVIATGLEENRVLTNLILQGNGIGEKGMTILAAALPSSIVELDLSNNPAVGEKG 297
            CGVTSGGRGRRSLAGLRSLALTLKAAPPRLVVLD+GHNFIDDSAIEVIATGLEENRVLTNLILQGNGIG+KGMTILAAALPSSIVELDLSNNPAVGEKG
Sbjct:  210 CGVTSGGRGRRSLAGLRSLALTLKAAPPRLVVLDIGHNFIDDSAIEVIATGLEENRVLTNLILQGNGIGDKGMTILAAALPSSIVELDLSNNPAVGEKG 308
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig824.16389.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM61_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.670e-53
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 CGVTSGGRGRRSLAGLRSLALTLKAAPPRLVVLDLGHNFIDDSAIEVIATGLEENRVLTNLILQGNGIGEKGMTILAAALPSSIVELDLSNNPAVGEKG 297
            CGVTSGGRGRRSLAGLRSLALTLKA PPRLVVLD+GHNFIDDSAIEVIATGLEENRVLTNLILQGNGIG+KGMTILAAALPSSIVELDLSNNPAVGEKG
Sbjct:  286 CGVTSGGRGRRSLAGLRSLALTLKAGPPRLVVLDIGHNFIDDSAIEVIATGLEENRVLTNLILQGNGIGDKGMTILAAALPSSIVELDLSNNPAVGEKG 384
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig824.16389.1 vs.
Match: Uncharacterized (LOC108891710 n=14 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6BWN3_LATCA)

HSP 1 Score: 53.9 bits (128), Expect = 3.290e-6
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:   34 SLAGLRSLALTLKAAPPRLVVLDLGHNFIDDSAIEVIATGLEENRV-LTNLILQGNGIGEKGMTILAAALPSS----IVELDLSNNPAVGEKG 297
            S  GL SL LT  +A   L  LDL HN + DS +EV+A GL++    L  L L G  + EKG + LA+AL S+    + +LDLS N   GEKG
Sbjct: 2125 SCKGLTSLVLT--SASSNLTKLDLSHNDLLDSGVEVLANGLKDLHCKLETLKLSGCQVTEKGCSDLASALTSNTASHLKQLDLSYNHP-GEKG 2214
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig824.16389.1 vs.
Match: NACHT, (LRR and PYD domains-containing protein 14-like isoform X3 n=3 Tax=Acanthopagrus latus TaxID=8177 RepID=UPI00187C6BCF)

HSP 1 Score: 52.8 bits (125), Expect = 8.170e-6
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   55 LALTLKAAPPRLVVLDLGHNFIDDSAIEVIATGLEE-NRVLTNLILQGNGIGEKGMTILAAAL---PSSIVELDLSNN 276
            +A  LK+ P  L  LDL HN+++DS ++++ +GLE  N  L NL   G  + E     LA+AL   PS +  LDLSNN
Sbjct:  727 VASALKSNPSHLTHLDLSHNYLNDSGVKLLCSGLESPNCRLENLKFFGCNLSEISCDSLASALKSNPSHLRHLDLSNN 804
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig824.16389.1 vs.
Match: NACHT, (LRR and PYD domains-containing protein 3-like n=1 Tax=Alosa alosa TaxID=278164 RepID=UPI0020150B4A)

HSP 1 Score: 51.2 bits (121), Expect = 2.880e-5
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   55 LALTLKAAPPRLVVLDLGHNFIDDSAIEVIATGLEENRV-LTNLILQGNGIGEKGMTILAAAL--PSSIVELDLSNNPAVGEKG 297
            +  T+  +P  L+ LDL HN + DS +++I+TGL  +   L  L   G  + EK   I+A  L  P+S++ELDLS+N  +G+ G
Sbjct:  842 IVATVLQSPNSLIELDLSHNDLRDSGVQLISTGLYSSHCKLQALRFAGCKLSEKSCGIVATVLQSPNSLIELDLSHND-LGDSG 924
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig824.16389.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.350e-5397.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical4.670e-5396.97leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized3.290e-645.16LOC108891710 n=14 Tax=Lates calcarifer TaxID=8187 ... [more]
NACHT,8.170e-642.31LRR and PYD domains-containing protein 14-like iso... [more]
NACHT,2.880e-538.10LRR and PYD domains-containing protein 3-like n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig824contigE_fasciculatus_S2_contig824:25127..26354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score186.4
Seed ortholog evalue6.3e-45
Seed eggNOG ortholog2880.D7FM61
Model size299
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size297
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.649054-CDS-E_fasciculatus_S2_contig824:25126..251981696842484.649054-CDS-E_fasciculatus_S2_contig824:25126..25198Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 25127..25198 +
1696842484.661296-CDS-E_fasciculatus_S2_contig824:25498..256391696842484.661296-CDS-E_fasciculatus_S2_contig824:25498..25639Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 25499..25639 +
1696842484.6747236-CDS-E_fasciculatus_S2_contig824:26268..263521696842484.6747236-CDS-E_fasciculatus_S2_contig824:26268..26352Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 26269..26352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig824.16389.1prot_E_fasciculatus_S2_contig824.16389.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig824 25127..26352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig824.16389.1

>prot_E_fasciculatus_S2_contig824.16389.1 ID=prot_E_fasciculatus_S2_contig824.16389.1|Name=mRNA_E_fasciculatus_S2_contig824.16389.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
CGVTSGGRGRRSLAGLRSLALTLKAAPPRLVVLDLGHNFIDDSAIEVIAT
GLEENRVLTNLILQGNGIGEKGMTILAAALPSSIVELDLSNNPAVGEKG
back to top

mRNA from alignment at E_fasciculatus_S2_contig824:25127..26354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig824.16389.1 ID=mRNA_E_fasciculatus_S2_contig824.16389.1|Name=mRNA_E_fasciculatus_S2_contig824.16389.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:25127..26354+ (Ectocarpus fasciculatus EfasUO2)
TGCGGCGTAACCTCCGGCGGGCGGGGTCGCAGGAGCCTGGCCGGGCTGCG
GTCGCTGGCGTTGACTCTCAAGGTATCGAAAAGGGAGGGGGGACGGTTGT
AGTCCTGAGAAGGAGGGTGGGGGGCGGTGGCAGTGCAGTGGTGGCATTGC
GGTCGCCTTGGAAAGGAGCGTTCTTAGGTTCTCACCAGAGGCAGGCACGA
GTTTAGTGTTTAAGCTTGTTCGGATCAGGCACAAGGCAGCCATAGTAAAA
GCAGTACTAGTTGCGCAATTGGCAGGTGGTGCATTTTCTCTTGTAGTATA
CAGGAGACTGTTGTAGACTTTTTTTCCCGGTATGCTCAAATATCTCGTTT
CGTCGCACATCGCTCAAATCAGGCTGCCCCGCCCCGCCTGGTGGTCCTGG
ACCTTGGACACAACTTCATCGACGACAGCGCCATAGAGGTGATCGCGACC
GGCCTCGAGGAGAACCGGGTCTTGACCAACCTCATCCTGCAGGGAAACGG
CATCGGAGAGAAGGTATACTGGGTACATGGTGGTGCTAATCGCACAGGGA
ATTTGGGGCTAGTCTTGTAGTAGCATGAAGTGCCCATTTGCGGCAGCTAG
TTTATGATAATTTATTGATTCCGCGTAGCCCCTAAGAGCAGCATATTCGG
GGTGCCGCGTCTTGGGTTTGACTTGTTGTCCGGAGGGGGGATACTCAAAT
TGGCAGTCGTGTACAACATGTGTATTCCCGCTTCACCATGGAGCTAGACT
TGCTGTAGAGGGACTCAATGGCATGTGTTTTTTGCTTTTTGTCTGGGATG
ATATATCGAGGTCAACGCATGCAGACATTCCGTGTGCCAGTAAGAGGCCT
AACACATGGTCATATTTTCTGCACGGCGTATGCTGTTTTCCGTCTGTTAG
ACAAACGGTATACCCATGGTCTACATCTGCTGTACCTATTAACTCTCCAT
TTGAGCTTTAGAAAGGTACACCCTTTTCTTTGGGTAGTTCGCCTATGAGC
ACGGAACGCGCCTGAGTCAGTTTGGGCCAGTACGGACATTAGAAGGTACT
GAGAAGTAGAGACCGGCACGATTTTCGATGTCAAGACGAAACAACGCGAA
CAACTCTCAACCAAAGCTTGCCCCCCGACATTTCCGACCCAGGGCATGAC
CATCCTGGCGGCTGCCCTTCCATCCTCCATCGTCGAGCTAGACCTATCCA
ACAACCCGGCCGTGGGCGAGAAGGGCGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig824:25127..26354+

>mRNA_E_fasciculatus_S2_contig824.16389.1 ID=mRNA_E_fasciculatus_S2_contig824.16389.1|Name=mRNA_E_fasciculatus_S2_contig824.16389.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:25127..26354+ (Ectocarpus fasciculatus EfasUO2)
TGCGGCGTAACCTCCGGCGGGCGGGGTCGCAGGAGCCTGGCCGGGCTGCG
GTCGCTGGCGTTGACTCTCAAGGCTGCCCCGCCCCGCCTGGTGGTCCTGG
ACCTTGGACACAACTTCATCGACGACAGCGCCATAGAGGTGATCGCGACC
GGCCTCGAGGAGAACCGGGTCTTGACCAACCTCATCCTGCAGGGAAACGG
CATCGGAGAGAAGGGCATGACCATCCTGGCGGCTGCCCTTCCATCCTCCA
TCGTCGAGCTAGACCTATCCAACAACCCGGCCGTGGGCGAGAAGGGC
back to top