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Homology
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: RRM (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE) HSP 1 Score: 243 bits (621), Expect = 2.420e-69 Identity = 206/247 (83.40%), Postives = 207/247 (83.81%), Query Frame = 3
Query: 9 MSGRRDGTFFGDPGMRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGXXXXXXXXXXXXXXXXXXXXXXXRYDRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHRRRRSRSASPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAKRSSRHRDGSEEGXXXXGHSKRGRD 743
MSGRRDGTFFGDPGMRGNGPPNIEGM+TLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYG XXXXXXXXXXXXX RYDRRD XXXXXXXXXXXXXXX SASPR XXXXXXXXXXXX XXXXXXXXXXXXXXXX AAKRSSRHRDGSEE XXXX HSKRGRD
Sbjct: 1 MSGRRDGTFFGDPGMRGNGPPNIEGMITLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGGGGGYXXXXXXXXXXXXXG----RYDRRDDYRHSSRRSXXXXXXXXXXXXXXX------------SASPRREXXXXXXXXXXXXPLYXXXXXXXXXXXXXXXXSPAAKRSSRHRDGSEEXXXXXXHSKRGRD 231
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE) HSP 1 Score: 151 bits (382), Expect = 3.700e-37 Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 3
Query: 39 GDPGMRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEA--SGGYG 353
G RG+GPPNI+GMVTLKVDN+ + S ++LR +FE G+LGDVY+PRD+RTGEPRGFAFVR++D+RDADDA+DR+DG F GRELRIQYA+KRRP SGGYG
Sbjct: 7 GGSDQRGSGPPNIDGMVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPGGGGSGGYG 113
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: Serine (arginine-rich splicing factor 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FVA8_PARCT) HSP 1 Score: 130 bits (328), Expect = 7.420e-31 Identity = 57/95 (60.00%), Postives = 78/95 (82.11%), Query Frame = 3
Query: 54 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEA 338
RG GPPNIEGM +LKVDN+ Y +++DDL+++F YG++GDVY+PRD RT + RGFAFVRF ++RDA+DA+DR+DG GRE+R+Q AK RP++
Sbjct: 5 RGRGPPNIEGMTSLKVDNLTYRTTVDDLKKVFRAYGDVGDVYIPRDARTNQSRGFAFVRFFERRDAEDAMDRVDGSVLDGREIRVQNAKYGRPQS 99
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: RRM (domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZXL2_LOTGI) HSP 1 Score: 125 bits (315), Expect = 1.100e-29 Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 3
Query: 54 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGY 350
RGNGPP+ +GMV+LKVDN+ Y + DDL+R FEKYG++GD+Y+PRD T E RGFAFVRF D+RDA+DA+D MDG GR+LR+Q A+ RP G+
Sbjct: 2 RGNGPPSTDGMVSLKVDNLTYRTRPDDLKRAFEKYGDVGDIYIPRDRITKESRGFAFVRFFDKRDAEDAMDSMDGAMMDGRDLRVQMARYGRPTNQRGH 100
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.240e-29 Identity = 53/90 (58.89%), Postives = 75/90 (83.33%), Query Frame = 3
Query: 66 PPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 335
PP+I GM+TLKVDN+ + ++ D++RR+F+KYGE+GDVY+PRD TG+PRGFAFVR++D DA++A+ MDG+ GR LRIQ+A +RRP+
Sbjct: 8 PPDISGMITLKVDNITFRTTADEVRRVFDKYGEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRPD 97
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J1U9_STRMM) HSP 1 Score: 127 bits (319), Expect = 1.500e-29 Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 3
Query: 57 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRP 332
G GPPNIEGM +LKVDN+ Y ++ +DLRR FEKYGE+GDVY+PRD T E RGFAFVRF D+RDA+DA++ MDG+ GRELR+Q A+ RP
Sbjct: 4 GRGPPNIEGMTSLKVDNLTYRTTPEDLRRAFEKYGEVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGQMLDGRELRVQMARYGRP 95
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: serine/arginine-rich (splicing factor 2-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88AFA6) HSP 1 Score: 125 bits (313), Expect = 5.720e-29 Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 3
Query: 57 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGG 347
G GPPN EGM++LKVDN+ Y ++ ++L+R FEKYG++GDVY+PRD T E RGFAFVRF D+RDA+DA+D MDG F GRELR+Q A+ RP+ G
Sbjct: 4 GRGPPNSEGMISLKVDNLTYRTTPENLKRAFEKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDAMDSMDGAIFDGRELRVQTARYGRPDTRRG 100
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: RRM (domain-containing protein n=12 Tax=Daphnia TaxID=6668 RepID=E9HGN9_DAPPU) HSP 1 Score: 122 bits (305), Expect = 6.040e-29 Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query: 51 MRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 335
M G GPP IEGM +LKVDN+ Y ++ +DLRR+FEKYG++GDVY+P+D + E RGFAFVRF D+RD +DA+ MDG GRELR+Q A+ RP+
Sbjct: 1 MSGRGPPRIEGMTSLKVDNLTYRTTCEDLRRVFEKYGDVGDVYIPKDRFSRESRGFAFVRFYDRRDGEDAMHAMDGRMMDGRELRVQLARYGRPD 95
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: serine/arginine-rich (splicing factor 2-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C254D37) HSP 1 Score: 123 bits (309), Expect = 8.970e-29 Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 3
Query: 57 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEA 338
G PP IEGM++LKVDN+ Y +S++DLRR FE+ GE+GD+Y+PRD T E RGFAFVRF D+RDA+DA+D MDG GRELR+Q A+ RP +
Sbjct: 5 GRAPPRIEGMISLKVDNLTYRTSVEDLRRAFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARYGRPSS 98
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Match: serine/arginine-rich (splicing factor 2 n=2 Tax=Psylloidea TaxID=33375 RepID=A0A3Q0J8V1_DIACI) HSP 1 Score: 124 bits (311), Expect = 9.740e-29 Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 3
Query: 57 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEAS 341
G PP IEGMV+LKVDN+ Y ++ DDLRR+FE+ GE+GD+Y+PRD T E RGFAFVRF D+RDA+DA+D MDG GRELR+Q A+ RP +S
Sbjct: 4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSS 98
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
| Match Name | E-value | Identity | Description | |
|---|
| RRM | 2.420e-69 | 83.40 | domain-containing protein n=2 Tax=Ectocarpus TaxID... | [more] |
| RRM | 3.700e-37 | 68.22 | domain-containing protein n=1 Tax=Ectocarpus sp. C... | [more] |
| Serine | 7.420e-31 | 60.00 | arginine-rich splicing factor 2 n=2 Tax=Alcyonacea... | [more] |
| RRM | 1.100e-29 | 59.60 | domain-containing protein (Fragment) n=1 Tax=Lotti... | [more] |
| RRM | 1.240e-29 | 58.89 | domain-containing protein n=1 Tax=Tribonema minus ... | [more] |
| RRM | 1.500e-29 | 65.22 | domain-containing protein n=1 Tax=Strigamia mariti... | [more] |
| serine/arginine-rich | 5.720e-29 | 60.82 | splicing factor 2-like isoform X1 n=2 Tax=Gigantop... | [more] |
| RRM | 6.040e-29 | 58.95 | domain-containing protein n=12 Tax=Daphnia TaxID=6... | [more] |
| serine/arginine-rich | 8.970e-29 | 60.64 | splicing factor 2-like n=1 Tax=Leptinotarsa deceml... | [more] |
| serine/arginine-rich | 9.740e-29 | 62.11 | splicing factor 2 n=2 Tax=Psylloidea TaxID=33375 R... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 271.6 |
| Seed ortholog evalue | 4.4e-70 |
| Seed eggNOG ortholog | 2880.D7FM62 |
| Model size | 3432 |
| KEGG ko | ko:K12891 |
| KEGG Pathway | ko03040,ko05168,map03040,map05168 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 |
| Exons | 6 |
| EggNOG free text desc. | regulation of RNA splicing |
| EggNOG OGs | KOG4207@1,KOG4207@2759 |
| Ec32 ortholog description | SR RNA splicing protein |
| Ec32 ortholog | Ec-16_004930.1 |
| Cds size | 882 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03041 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842484.51704-UTR-E_fasciculatus_S2_contig824:12789..15331 | 1696842484.51704-UTR-E_fasciculatus_S2_contig824:12789..15331 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig824 12790..15331 - |
| 1696842484.6067505-UTR-E_fasciculatus_S2_contig824:20403..20411 | 1696842484.6067505-UTR-E_fasciculatus_S2_contig824:20403..20411 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig824 20404..20411 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842484.5287228-CDS-E_fasciculatus_S2_contig824:15331..15439 | 1696842484.5287228-CDS-E_fasciculatus_S2_contig824:15331..15439 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig824 15332..15439 - |
| 1696842484.5395668-CDS-E_fasciculatus_S2_contig824:15930..16189 | 1696842484.5395668-CDS-E_fasciculatus_S2_contig824:15930..16189 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig824 15931..16189 - |
| 1696842484.5512462-CDS-E_fasciculatus_S2_contig824:16862..17074 | 1696842484.5512462-CDS-E_fasciculatus_S2_contig824:16862..17074 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig824 16863..17074 - |
| 1696842484.5671184-CDS-E_fasciculatus_S2_contig824:17426..17583 | 1696842484.5671184-CDS-E_fasciculatus_S2_contig824:17426..17583 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig824 17427..17583 - |
| 1696842484.5793512-CDS-E_fasciculatus_S2_contig824:19792..19888 | 1696842484.5793512-CDS-E_fasciculatus_S2_contig824:19792..19888 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig824 19793..19888 - |
| 1696842484.596545-CDS-E_fasciculatus_S2_contig824:20353..20403 | 1696842484.596545-CDS-E_fasciculatus_S2_contig824:20353..20403 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig824 20354..20403 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig824.16387.1 >prot_E_fasciculatus_S2_contig824.16387.1 ID=prot_E_fasciculatus_S2_contig824.16387.1|Name=mRNA_E_fasciculatus_S2_contig824.16387.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=294bp
MSGRRDGTFFGDPGMRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKY
GELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRI
QYAKKRRPEASGGYGGGGGGGAYGYGGGGGGGYGGGGGRYDRRDDRRDDR
RDDRRDDYRRSSRRSRSRSRSRDHRRRRSRSASPRRERSRDRRRSRSRSP
PPSRRRSRSRSRSRSRSPAAKRSSRHRDGSEEGGGGGGHSKRGRDRRGSS
ADGGRDGEADKRNGHRDSSPPMNGGGGQSNSRRNSDAGSASPR* back to topmRNA from alignment at E_fasciculatus_S2_contig824:12790..20411- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig824.16387.1 ID=mRNA_E_fasciculatus_S2_contig824.16387.1|Name=mRNA_E_fasciculatus_S2_contig824.16387.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7622bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:12790..20411- (Ectocarpus fasciculatus EfasUO2)
CTTGTACCATGAGTGGCCGACGTGATGGAACTTTCTTCGGCGACCCCGGC
ATGAGAGGGTGAGAAAAAGAAGGAGGGTTTATCTGATTAACGGATGGATG
CCTGCTGACAAGTTGAAGACCGGCCAGCCTGAAACGCTTCGTAGAGACCT
TGCATTCATTGCTACATCAGCTGCACCTATGGTCTTGACAAGATGATCGA
ACGCGTGATGTCGAACGCACGGCCCAACCGACTCAGCCTGTTGTTTGCTT
TGCCCCACGCACCCCTCAGCGTTCGCCTGATGTCGCGATGTCTTTTGCAG
TGGTCTACTGTGTGTTCTCCACAAAAAAAACGGGCGAATGTGCAGTTCTT
CGATATCTTGTAAATGTAGGCTAAACACTAACACTTTGTGTAGTACGTCT
CGCGCATTTCATCACGCCAGCCTGCCGTTCGCTCGTCGTAGCATACGTTT
TTTCTTTCTTGCTTCTCTGACGCAAAGAACCCCATACAATTGTACCCAAT
TCATGAAATCCTGCTGTACACAGGAACGGGCCTCCGAACATTGAGGGCAT
GGTCACCCTCAAGGTGGACAACGTGCCCTACAACTCGAGCATCGATGACC
TCAGGCGCATCTTCGAAAAGTGAGAACGCGGCTTGGTCATATAAACGATG
ACGCACTTTTCCGTATCGAGGGTCGGGTGCCTCTGCTGGCCGGTGGTCGG
TGCTGCTGTTGCAAACGTTCACCTCTGTTGTTGAAGTGCCGCTTGATTGA
AGTTTCCAATCAAGCAATGTCCGTGCCCGAACGACAGGGAGTGTCTCTCG
GAGTGTAGCGAGTTTCCTGTACCCAGGTGTCAATTTTTACCCGCTCCATT
GGTCCCTTTGTGCCGGTTCAGAGTGTTCCGGCCCAGAAAGTGGGCGTCGG
CTGTCGAGTGGCATATGCATAGCCATTACTTATTCGTGCTCTGCTCGGTA
TGGGGTTAGCTCAAGCCCTACAGTAGGCCTTATGTAGAAACAGCGACGAC
CTGCTGCCTGCTACCGCGTGCGAATAGCGTGTTGCTGTTGCATGTGTTGG
CGTCACGTTGGGAAATGGACCTGAGTATACTGTACCCCCCTCCCACGGGC
ATGGCACAGCAGTCTTGCTGGTTCGGGTCGCTCAATATTGGTTTAAGGCA
CGGGTAGTGATTGTCCCCTGGATATGTCCAGAGCAAGAGCAAGCCTGTGC
CGAAAGGGTCCTGGCCACACTTCCCCTCGGCTTGTGGTGTACCGTGCTCC
TCAGGTTTTATTCTCTTGTCTCCTTACAATAATATCTGTATAATAGTGTT
TCCAATGGGGACAGGCAGTCTGTAAGACTGCAACATATCTATTAATAGCA
GCTACATATACATGCCCATGTGCGTGAGTGGTAGTCGAACGGCCAGGCGC
GTTGCCGAGGTTTGGACCCGAGGCGGATCAAGCCGCTCCAGAATTCGTAC
AAAAAGTAGCGGCCCGTCACCTCAGCCTCACTCGCCTGCTCGCTACTGTA
TCGTCCTCTCGCCTTGTCCTACACCTGCCCACGGTCGGAACCGACTGCTG
GTACATGATGTAGCAGACGCGAGACCAACAGATCGAAAGTATCCTGACTA
CTTTGGTGTCCTGGCCTGAACTGACCTGACTGTGTGGGTGAGGGTGGTGA
TGGCGCCGGAATTGTGGTGTTGTTCACAACGTTTGGGGGTTGCAGCAGCA
CCCGGGCTGAAGGGCCAACGTTGAGATCGAGTCGCGGTCGATGGTGATGA
TGGTGGTTGTCGGTGAAGGGAGGGAGGGCATCAAGGCTGCCGGCGTGAGA
ACGAGAGCAAAGCTGACATCAACCAGACAAGAGTCGCGTCGAGTCGAGTC
GAGTCAGACCGTCATCTGTTCCAGTATGTTCCTGTTCAGATCCGGACTGA
TCCTGACCGTTCTGATCCTGACCTGGCGAGAGAGACAGAGAAGAGAGAGA
GAGAGAGACTAAAGCGAGCGTACTGCCGAACAAATCGAGTACCAGTCGAG
TCGAGTACAGCCGAACGAAAAGTACAGACAGAGGGTGGTCGTTTTTGGGA
ACGGTGGTGAAGAAGGGTCGGGCGGTTTGTGGCCGGCTGCCGCGCGATGT
GATCGTTGGCCGCCGCCACCCGACCCGACCGCGCGTGACGCGAGGTAAAG
TGCTTCCTTTGCGGTTTCTCGTTGTGTTTGCGACAAAAGGGAGTGTCTGG
CTTTGGCCTTTCGACGCGATTTTGAGTTTTGTCCGCCGGAGTCTGACAAG
TGACAAGGTGGTTGGGCGATTCGTTAAAGCACTATTCAGCGTGATCGTAG
CAAGCTTGCTCGCCGATAAGCTTGCTCGCGTGGTGGCGGTGTTTTGCGGC
GTCGCGCGTATCCGGGACTTGCGTCTGTCTTTCGCGTGTGTGCGCGATTG
TGGCCGCTGCTGCGTTTGTCGAGTCGGGTGGGCCGAACGGTAGGGAAGAA
GCTGTGTCCCCCTTCTCCCATGCGAGGAGAAGACCCCCCGGTATTTGAAC
CATGACAACGTGTACAGCAATAGTTGTATAATAGGGTTTTCACTGCATCG
ATCTCGCGTTTGTATAATGGCTGACCCATCTCTCCAGCTTCTGTGGAGGA
GAGAGATATCCAGAGCGAGTCTCTTGCTGCCGTTCGTCACGCAAGCAACA
AGTGACGCTCTTAATGCTCTTAATGCTATTAACAAGGTAGATGGCGTTCA
CGACCACGACCACGACGTGTGTGCCCGATGACTACGACCGAGCTGTGGCC
TGCTGCAACCGACCCAACATCGCCCCCGGCCCCCGATACATCCCAATCCC
GTTTTGTTTTGTTTTTTTCCCATGAAAGGTACGGGGAGCTTGGTGACGTT
TACATGCCCAGGGACCTGCGCACCGGAGAGCCGAGGGGATTCGCCTTCGT
GCGCTTCATGGACCAGCGGGACGCAGACGACGCCATCGACCGCATGGACG
GAGAGTTTTTCGCCGGCAGGGAGCTTCGAATCCAGGTTGGTTTGGCTGTT
GGGGAGATAAGAGGGAGGGAATACGGAGAATATCGTGCGTGTGCGTCTGT
GTGTTGGGGCTGATTTTTTTTTTGTGCTGGCTGGGTGTGCGGGTTCGCCC
GAACGTTGTGGTTGACGAGGGTGTACGCATGCTATGCTCGGTCTCGGTGG
TAACCCCGACGAAGAGCAGGCGTATTTTTGCTGTCTTTTCTATCACACTG
CGCCTTTTTTCTCCCTTTTTTGTTTTTTTTTCCACTGCTGTCCTCCCCCA
TGTAGCCACTTACGTTCCGTTTCCATCCGACCCTCCCTGCACTGCGACGT
TCAACAACGTGTGAAATGTTTTGTTGTTTTGGCGCAGTACGCCAAGAAGA
GGAGGCCCGAAGCCAGCGGCGGGTACGGAGGAGGAGGAGGAGGCGGTGCA
TACGGCTATGGGGGAGGAGGGGGAGGAGGATACGGTGGCGGAGGGGGGCG
CTACGATAGGCGTGACGACAGGCGTGACGACAGGCGTGACGACAGGCGTG
ACGACTACCGCCGCTCCAGCCGCCGCAGCCGCAGTCGCAGCCGCTCGAGG
TACAAACCCCTATTGTACGCGCATGTGTCCCCTCGTTCCCTCGTTCATGC
CATGAAACTCTTAATAACCCTTGTAGATACAATATGAAACACGCTTATTG
CTGACGGGATGGCGGCAGGGGGAAGCGATAGCAGCCCAAGAGGAGTCTTT
TTTTTGTGGTAGGGATGCGGGAGGACATGGTGCTATACTAGTTCGGGAGA
AGGCACAGCCGCGTTTTTGTGTCCTGCCGAAGTGCGGCACGCCCACCCCG
CGTTAATGGGCCGTTAAATATTCTGCCGCTTCACAGGAACATTGCAGACG
AGGCACACGAAAGAGAGTCGCGGCGCTTGGCATGTGTCACGTTTTTGGTT
GGGTGGCCTGGTTTAATATGGTTGAGGCGTGTTTGTGCCCCCCCCTCCTC
GCTCCGTCCCGGCATTGTAGGGATGCGAGATCCATGGTCTACCGATTACG
GCGTGCACTTACACGAGTATCCCCCGCTCTATAGTCTACCGACTACGGTA
TGCACACTCAGAGTACTCCCCCTTTTTTCCCGCTACATGTATGGTCTACC
GACTACAGTACAGCATGCACTTGAGTACACCCTTCCCCCTCTTTCCTTTC
CCCCTACTGCTGTCTATCGACTACGGCATGCACTTATATGCGTGCCCCTC
CTCCCCCTTCCCTGCTGGACAGGGACCACCGCCGCCGCCGATCCAGGAGC
GCCTCCCCCCGCCGCGAGCGGTCCCGCGACCGCCGCCGGTCGAGGTCCAG
ATCGCCCCCCCCCTCCCGCCGCCGCTCCCGCTCAAGGTCCCGCTCCCGCT
CCCGCTCCCCGGCGGCCAAGCGCAGCAGCAGGCACCGGGACGGCAGTGAA
GAGGGCGGCGGCGGCGGCGGCCACAGCAAGAGGGGCAGGGACCGCCGCGG
TTCCAGCGCGGACGGTGGCAGGGACGGCGAGGTGGGTGGTGTGTGTTATC
ATTTTTCTTGTTTCGCGTGGTGAGGCGGTGGTGTTCACCCGTGTGTGTGC
TTCGTTCAGCTTGTTGGACATTGCAAATCTGGTGTCTTGATTCAGAATTG
AAGGCTTTTCCCGGAAGACGCGGAAACATGTGTTCTTGAGTCCCGTTTGC
CGATTTTTTCGTTCAGCTGCATTCGCCCATGGGGCCATCACTTTCATCCC
TCACGGAGACTGCGGACGAGCACAACAACAGAGGAGAGGGGTTGTCACAC
GTGGATGGTCCTGTTCTGCATCCGAGGACGCTTTTTTGTGTCTTCGCTAG
ATACTGCTCTTGATCTAGAATATTGCTGCGTGGCGAAAGCCCACCGCACG
CGGCAACCCGTTGAGCAAAATATATGATTGCCCCACGCCCTCGCCTCTCC
TTCCTTGTCTTTGTTCGTTTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTCAGGCCGACAAGCGCAATGGACACCGTGACA
GCAGCCCGCCCATGAACGGCGGCGGCGGCCAGAGCAACAGCCGCCGCAAC
AGCGATGCCGGTAGCGCCAGCCCCCGCTGAGTTAGGTGCGAGGGGATAGG
TGCGCTTGGGGCGAAAGCGTGGTGGGTTTTCGGCGAAAAGGCCGCCCGCT
GCTCACTGCCGTACGAAGAGGGAATGGACGGCTGCTGGTCGGACGACGCT
AGAGAGACAGACTCTCCGAGTGTTGTTTTTTTTGCGCAGGGACGGACCCC
GTGGTATCATACTTGGCAGAGAGCGTGTCGTCGCTGGCAAAAAAGTCTGG
AATTCTTGTTGGAGTTTCGCCGATTAGTGTAGATGCGTTGCGGTGCGACT
TTTCTTTTTTTTTTGAAGTGCACTGCTGCACCTGTTCAGCACTACTAATA
ATAGCCATGTTGTGTAAATTCGGGTATCGCTTGTGTTGTGTCTCTCACGC
GGCAGCTTTTTAAGTATGGCACATAGTTTTGCACCGTGGTTACCGACATG
AGTCGAGGCGGCAATTGCTCATCTTGCGTGCGGTGGTGCCCTTTTGAGCT
GAAAAGCCCAAGGGCACAAGGCTCCAACTATGCTCTGTTTCGTGACTCGG
GGATAGCTTGAAACGGGATCACTTCGGTTGAAGAGGAAAGGAACGAGGGA
AGCACGCGCTCGGGTGTTGCTGGTGAAGAGGAGTACAAAATGGTCGATCA
AATTTCTGAACTTGCAAATGGTTGTTGTCGGTGGGCAGGGGGGCGGTTCT
CGCGACCTCGGTCGAATGGATTGAAGACTTCCCTCAATGCCAGGTCAGCT
CCGGTTGACTCTCGCTTTTTCATCTTTGGGTCACGCCGTCACCATACCAT
AACACTTGGTCTCTACTAAATACATTTACATACCTGTTGATGACTCTTGT
CATATTTCCACCAATAGAACGGCATCCTGCCCAACCCGTGTACAACCAAC
CCTGTACGTACCGAATTGTTGGCGGGGTGAGTAGGAAAAAGAAGATCTGT
GTGGCCACGGCGCTGGTGTGTGATATGGTGGACACCTACTAGGTGACTGT
TGAGTCTAGTCCACCTTCTTGCAGGATTGCATGTTGTATGCGTTCTGGGC
GCACAAACAAGTCGGGACCATACGGAAGAAAGGCTTACTCGTGGGGTCTC
TACCTCCCGTTTTATTGAGTACAGCACAGGCGAGTTTATTTGGGTGGAGC
AAGGCTCTTCCTCGCAGTTTGCTATTATTGTAGTTCCCGTTTGGTTGTGC
GCGGCTGGTGAAATTGGCTGCCACAGATGGAAGACTCGATCGAGTAGTTT
TAGTCACCCACTTCTTTCGGTGTTGGGGTGAAAGTGAAAGTGAGTTAAAT
CCCTCAGCACACACCCGCACTTACAGGGACCTCTACCCACTTAGATGTGC
AAAATTGCACCAACTCTCAAACGAATTTAGCGTACATACATACATGTGTG
TGTGCTCCCAATTCTAAGCTTCGGGGCTATTTTTAGTTCTCATTTTTTCT
GTTCTTTTCTTCAAGCATCTCGTTTTGGTGAAAGGCGACCAAAGTATTTT
TGTACTTATTCTCGAACGAACAATGTTTGTTTGTGTGTGCTCCCCAATTC
TCAAATGCTCCCTCGGGGCTTTTTTTTAGTTCTGTTTTTTTCTGTTCGTT
TTTACCGCAGCATCTCGTTTTGGTGAAAGGCGACCAAAGTATTTTTGTAC
TTCTTCTCGAACGAACAATGTTTGTTTGTGTGTGTGCTCCCCGATTCTCA
AAATGCTCCCTCGGGGCTTTTTTTAGTTCTGTGTTTTTTCTGTTCGTTTT
TACCGAAGCAACTCGTTTTGGCCAAGAAATACAATGAATGTTGCTATGCA
ACCAAAGTCGTCCTGATTATTTTCTATATTGTTTTTTCGAAGCGGATTGC
ATGAACCCTCCTTTGAGCAGTTGGCCCGTGGTCACGGAAGCTGTCCACTC
CAGTTGTCTGTATTGTACGTCTGTGCATGTGAACTTGTTATGGGCATGCA
TGTTGTAACAACAGGGATCGCACCAACTTGAACTGCATGTGTTCGCGAGG
ATAACCTAACCTACACAGAGTATTGCACGCAATTTGAGGGGAGATGGACG
ACGGTCTCTCTTGAACATCATCATCATTCTGGCCGCAGGAAAACGTCGGT
GTAGATGCGACGGCAACTGATGACGCTCGGAGTGATTGATCATGGGTTGT
TTGGAGTTTGGAAGCATTTGCTCGGAGGGATCATGTTGGAAGCGTTGACT
CTTAGAAAAGCCTCGACTACAAGTATGCATATCCATCACATATGCAGTGT
ATTGACAAACGGAGGAAGCCCTCGAACGAACAAAAAATTAACGGATCTTA
AATCTTAAGTGCGTGTCTGCTGGGGTTTTTGTGTTCTGGAAAATCCGAAT
TTACTGCTTTCGGAAGTATTGTTGCCCGAGGAGGCTCGGGGTTGTTGCCC
GAGAATAAGCTGTTTGTTGACGGTTGGGTAACCATGATGGTATTATAGTA
AGTAGGGGTTTTGCCAAACGGGACAAATCAGCGTCGTCTAGATGGAGCCA
TATGTTTTCCAAGTTTTCGGTTGAGAGGGTGGCTTGGGTTGTTGGTAAAA
AGTAGGCTTATACCAGTTATAC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig824:12790..20411- >mRNA_E_fasciculatus_S2_contig824.16387.1 ID=mRNA_E_fasciculatus_S2_contig824.16387.1|Name=mRNA_E_fasciculatus_S2_contig824.16387.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:12790..20411- (Ectocarpus fasciculatus EfasUO2)
ATGAGTGGCCGACGTGATGGAACTTTCTTCGGCGACCCCGGCATGAGAGG
GAACGGGCCTCCGAACATTGAGGGCATGGTCACCCTCAAGGTGGACAACG
TGCCCTACAACTCGAGCATCGATGACCTCAGGCGCATCTTCGAAAAGTAC
GGGGAGCTTGGTGACGTTTACATGCCCAGGGACCTGCGCACCGGAGAGCC
GAGGGGATTCGCCTTCGTGCGCTTCATGGACCAGCGGGACGCAGACGACG
CCATCGACCGCATGGACGGAGAGTTTTTCGCCGGCAGGGAGCTTCGAATC
CAGTACGCCAAGAAGAGGAGGCCCGAAGCCAGCGGCGGGTACGGAGGAGG
AGGAGGAGGCGGTGCATACGGCTATGGGGGAGGAGGGGGAGGAGGATACG
GTGGCGGAGGGGGGCGCTACGATAGGCGTGACGACAGGCGTGACGACAGG
CGTGACGACAGGCGTGACGACTACCGCCGCTCCAGCCGCCGCAGCCGCAG
TCGCAGCCGCTCGAGGGACCACCGCCGCCGCCGATCCAGGAGCGCCTCCC
CCCGCCGCGAGCGGTCCCGCGACCGCCGCCGGTCGAGGTCCAGATCGCCC
CCCCCCTCCCGCCGCCGCTCCCGCTCAAGGTCCCGCTCCCGCTCCCGCTC
CCCGGCGGCCAAGCGCAGCAGCAGGCACCGGGACGGCAGTGAAGAGGGCG
GCGGCGGCGGCGGCCACAGCAAGAGGGGCAGGGACCGCCGCGGTTCCAGC
GCGGACGGTGGCAGGGACGGCGAGGCCGACAAGCGCAATGGACACCGTGA
CAGCAGCCCGCCCATGAACGGCGGCGGCGGCCAGAGCAACAGCCGCCGCA
ACAGCGATGCCGGTAGCGCCAGCCCCCGCTGA back to top
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