mRNA_E_fasciculatus_S2_contig824.16386.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig824.16386.1
Unique NamemRNA_E_fasciculatus_S2_contig824.16386.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig824.16386.1 vs.
Match: CCT (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM63_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 5.000e-56
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = -1 
Query:    4 GGPVDLAKQERRRVKIQRYLYKRSRRKFAKSTRDASPSRSRPKAALLRPRVKGKFVKTTPDFVSVNAGGPPQREDGGDGDGFAQWEPPEMLAGNMNNALSPKLQVA 321
            GGPVDLAKQERRRVKIQRYLYKRSRRKFAKSTRDASPSRSRPKAALLRPR+KGKFVKTTPDFVSVNAGGPPQREDG DGDG AQWEP +MLAGN+NNALSPK QVA
Sbjct:  407 GGPVDLAKQERRRVKIQRYLYKRSRRKFAKSTRDASPSRSRPKAALLRPRIKGKFVKTTPDFVSVNAGGPPQREDG-DGDGLAQWEPTDMLAGNINNALSPKPQVA 511
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig824.16386.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
CCT5.000e-5693.40domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig824contigE_fasciculatus_S2_contig824:10181..10501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.296699-CDS-E_fasciculatus_S2_contig824:10180..105011696842484.296699-CDS-E_fasciculatus_S2_contig824:10180..10501Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig824 10181..10501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig824.16386.1prot_E_fasciculatus_S2_contig824.16386.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig824 10181..10501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig824.16386.1

>prot_E_fasciculatus_S2_contig824.16386.1 ID=prot_E_fasciculatus_S2_contig824.16386.1|Name=mRNA_E_fasciculatus_S2_contig824.16386.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
RGHLEFRRQGVIHVAGEHLRRLPLREPIPVTSVLPLRRPAGVNGDEVGGG
LDELALDPRAEQRGLGAGAGRRGVPRGLGELPAGALVQVPLDLDAAPLLL
GQVHGPP
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mRNA from alignment at E_fasciculatus_S2_contig824:10181..10501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig824.16386.1 ID=mRNA_E_fasciculatus_S2_contig824.16386.1|Name=mRNA_E_fasciculatus_S2_contig824.16386.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:10181..10501+ (Ectocarpus fasciculatus EfasUO2)
CGTGGCCACCTGGAGTTTCGGCGACAAGGCGTTATTCATGTTGCCGGCGA
GCATCTCCGGCGGCTCCCATTGCGCGAACCCATCCCCGTCACCTCCGTCC
TCCCGCTGAGGCGGCCCGCCGGCGTTAACGGAGACGAAGTCGGGGGTGGT
CTTGACGAACTTGCCCTTGACCCGCGGGCGGAGCAGCGCGGCCTTGGGGC
GGGAGCGGGACGGCGAGGCGTCCCTCGTGGACTTGGCGAACTTCCGGCGG
GAGCGCTTGTACAGGTACCTCTGGATCTTGACGCGGCGCCTCTCCTGCTT
GGCCAAGTCCACGGGCCCCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig824:10181..10501+

>mRNA_E_fasciculatus_S2_contig824.16386.1 ID=mRNA_E_fasciculatus_S2_contig824.16386.1|Name=mRNA_E_fasciculatus_S2_contig824.16386.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:10181..10501+ (Ectocarpus fasciculatus EfasUO2)
CGTGGCCACCTGGAGTTTCGGCGACAAGGCGTTATTCATGTTGCCGGCGA
GCATCTCCGGCGGCTCCCATTGCGCGAACCCATCCCCGTCACCTCCGTCC
TCCCGCTGAGGCGGCCCGCCGGCGTTAACGGAGACGAAGTCGGGGGTGGT
CTTGACGAACTTGCCCTTGACCCGCGGGCGGAGCAGCGCGGCCTTGGGGC
GGGAGCGGGACGGCGAGGCGTCCCTCGTGGACTTGGCGAACTTCCGGCGG
GAGCGCTTGTACAGGTACCTCTGGATCTTGACGCGGCGCCTCTCCTGCTT
GGCCAAGTCCACGGGCCCCCC
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