mRNA_E_fasciculatus_S2_contig8226.16376.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8226.16376.1
Unique NamemRNA_E_fasciculatus_S2_contig8226.16376.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8226.16376.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.450e-25
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:   25 KVTNVTSPGAAGTYAPGDVVTIWVAFDQFVAVVGEPMLYLNTGKGEPGRAVYIGGSGNQ 201
            ++TNVTSP AAGTYAPGDVVTIWV FDQFVAVVGEP+ YLNTGKGEPGRA+Y+ GSGNQ
Sbjct: 1270 QITNVTSPDAAGTYAPGDVVTIWVTFDQFVAVVGEPVFYLNTGKGEPGRALYVEGSGNQ 1328
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BLAST of mRNA_E_fasciculatus_S2_contig8226.16376.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP12_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.080e-5
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   10 LDTISKVTNVTSPGAAGTYAPGDVVTIWVAFDQFVAVVGEPMLYLNTGKGEPGRAVYIGGSGN 198
            L T+     V S    G YAPGD +TI VAF + V V G P+L LNTG+     A+Y  GSG+
Sbjct:  677 LVTVDASVGVKSITPNGIYAPGDTITITVAFTKVVVVTGIPLLILNTGQ----NAIYTSGSGS 735
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8226.16376.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.450e-2584.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.080e-546.03protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8226contigE_fasciculatus_S2_contig8226:3546..3749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score108.6
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D7FJQ0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.FG-GAP repeat
EggNOG OGs28JEB@1,2QRTB@2759
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842483.50595-CDS-E_fasciculatus_S2_contig8226:3545..37491696842483.50595-CDS-E_fasciculatus_S2_contig8226:3545..3749Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8226 3546..3749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8226.16376.1prot_E_fasciculatus_S2_contig8226.16376.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8226 3546..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8226.16376.1

>prot_E_fasciculatus_S2_contig8226.16376.1 ID=prot_E_fasciculatus_S2_contig8226.16376.1|Name=mRNA_E_fasciculatus_S2_contig8226.16376.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
SRNLDTISKVTNVTSPGAAGTYAPGDVVTIWVAFDQFVAVVGEPMLYLNT
GKGEPGRAVYIGGSGNQA
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mRNA from alignment at E_fasciculatus_S2_contig8226:3546..3749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8226.16376.1 ID=mRNA_E_fasciculatus_S2_contig8226.16376.1|Name=mRNA_E_fasciculatus_S2_contig8226.16376.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8226:3546..3749+ (Ectocarpus fasciculatus EfasUO2)
TCCCGCAATCTTGACACGATATCCAAGGTGACAAATGTGACAAGTCCGGG
CGCCGCCGGAACATATGCCCCAGGGGATGTGGTAACGATCTGGGTCGCGT
TCGACCAGTTTGTTGCTGTGGTCGGTGAACCCATGTTGTATCTCAACACG
GGAAAGGGGGAGCCGGGAAGGGCAGTCTACATAGGAGGCAGCGGCAACCA
GGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8226:3546..3749+

>mRNA_E_fasciculatus_S2_contig8226.16376.1 ID=mRNA_E_fasciculatus_S2_contig8226.16376.1|Name=mRNA_E_fasciculatus_S2_contig8226.16376.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8226:3546..3749+ (Ectocarpus fasciculatus EfasUO2)
TCCCGCAATCTTGACACGATATCCAAGGTGACAAATGTGACAAGTCCGGG
CGCCGCCGGAACATATGCCCCAGGGGATGTGGTAACGATCTGGGTCGCGT
TCGACCAGTTTGTTGCTGTGGTCGGTGAACCCATGTTGTATCTCAACACG
GGAAAGGGGGAGCCGGGAAGGGCAGTCTACATAGGAGGCAGCGGCAACCA
GGCA
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