mRNA_E_fasciculatus_S2_contig8214.16370.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI) HSP 1 Score: 355 bits (912), Expect = 2.350e-120 Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNRP 522
VYVGNLSWECQWQDLKDHMRAAG+VKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGP G+KR+GQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCG VQFVEIPEDAQGRSKGYATVRFGSE+DAADAINQLDGTDLDGRRIGVREDNRP
Sbjct: 264 VYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPIGSKRIGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNRP 436
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBN8_THAPS) HSP 1 Score: 184 bits (467), Expect = 2.810e-56 Identity = 91/187 (48.66%), Postives = 116/187 (62.03%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMG---------------QLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
VYVGNLSW W+DLKDHM+A G+V D+ Q GRSKGC +VEY +P+EA A+ +L+++EL GR IFVREDRE+ R G Q EG Q+ V N+SWETGW+ LKDHF+QCG V E+ E GR +G+ VRF S +DA AI +L+G D GR + VR DN+
Sbjct: 2 VYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPLDVRVDNK 188
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC) HSP 1 Score: 182 bits (461), Expect = 1.830e-55 Identity = 92/173 (53.18%), Postives = 113/173 (65.32%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAG---NVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVRED 513
VYVGNLSW+ QWQDLKDHMR NV D+ E GGRSKGCA+VEY +P++A AI +L+DTE++GRLIFVREDRE G G GR+V+V N+SWE WQ LKDH + G+V ++ GRSKG V F S E+A AI +L+ T+L GR I VRED
Sbjct: 14 VYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVREDREGFKGGM--------GTGGRRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVRED 178
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Rnp (domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC) HSP 1 Score: 181 bits (460), Expect = 3.670e-55 Identity = 97/185 (52.43%), Postives = 122/185 (65.95%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE----GPTGTKRMG--QLHE-------GAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
VYVGNLS+E WQDLKDHMR GNV D+ ++ GRSKGC +VEY+ P A AIR+L++T+L GRLIFVREDRE+ GP G G +H A GRQ++V N+ +E WQ LKDHFK VQ E+ DA+GRS+G+ TVRFG+ +A A L+GT+L+ R I VREDNR
Sbjct: 8 VYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNR 191
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA) HSP 1 Score: 180 bits (456), Expect = 2.220e-52 Identity = 88/178 (49.44%), Postives = 117/178 (65.73%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
VYVGNL W +WQ+LKDHM+ AG V D+ +E GGRSKGC +VEY T +EA++AI L++TEL GRLIFVREDRE P G KR G EGRQ++V N+ W+T WQ LKD F+ G V+ +I E GRS+G+ +R+ + A AI +L+G +++GR I VR D +
Sbjct: 195 VYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDRE--PEGGSISKFAKRTAAPRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: RNA (binding protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZJ0_9STRA) HSP 1 Score: 179 bits (454), Expect = 3.370e-52 Identity = 90/173 (52.02%), Postives = 117/173 (67.63%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNRP 522
VYVGNLSW+ +WQDLKDHMR+AG+V+ + E GGRSKGC +V Y T EA +AI L+DTEL GR IFVREDREE + R A+G +V+V N+ W WQ+LKDH KQ G+V ++ E+A G SKG V F + ++A +AI+ L+ T+L+GR I VRED P
Sbjct: 72 VYVGNLSWKVKWQDLKDHMRSAGDVEHA-VIMEVGGRSKGCGIVTYATESEAQNAIETLNDTELDGRKIFVREDREENASAQPR-------AKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDREP 236
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM) HSP 1 Score: 178 bits (452), Expect = 4.260e-52 Identity = 89/178 (50.00%), Postives = 116/178 (65.17%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
VYVGNLSW +WQ+LKDHM+ AG V D+ +E GRSKGC +VEY T EA+ AI +L+++EL GRLIFVREDRE P G KR EGRQ++V N+ WET WQ LKD F+ G V+ +I E GRS+G+ +R+ + DA AI +L+G +++GR I VR D R
Sbjct: 166 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDRE--PEGGSISKLAKRAAAPRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E283_9EUKA) HSP 1 Score: 175 bits (443), Expect = 5.760e-52 Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 1
Query: 1 QVYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE-GPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVRED 513
QVYVGNLSWE WQDLKDH RAAG+V D+ E GRSKGC +V + + ++A +AI LHD++L GR IFVREDRE P G K +G G QV+V N+ WET W +LKDHF+ G+V ++ D +G+S+G+ TV F + DAA AI + + R I VR D
Sbjct: 64 QVYVGNLSWETSWQDLKDHFRAAGDVSHADVMMEHDGRSKGCGIVSFVSARDAGNAIASLHDSDLHGRKIFVREDREATAPGGGKGXXXXXQGTGGCQVYVGNLPWETNWMNLKDHFRDAGNVLHADVVMDPEGKSRGFGTVLFATTRDAAKAIQLFNESVFGSRTIEVRPD 235
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ84_PHYNI) HSP 1 Score: 176 bits (445), Expect = 6.660e-52 Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
VYVGNLSW +WQ+LKDHM+ AG V D+ + GRSKGC +VEY T +EA AI +L++TEL GRLIFVREDRE P G KR EGRQ++V N+ W+T WQ LKD F+ G V+ +I E GRS+G+ +R+ + DA AI +L+G +++GR I VR D R
Sbjct: 93 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE--PEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 268
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=25 Tax=Phytophthora TaxID=4783 RepID=A0A329T2W9_9STRA) HSP 1 Score: 176 bits (446), Expect = 3.460e-51 Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
VYVGNLSW +WQ+LKDHM+ AG V D+ + GRSKGC +VEY T +EA AI +L++TEL GRLIFVREDRE P G KR H E RQ++V N+ W+T WQ LKD F+ G V+ +I E GRS+G+ +R+ + DA AI +L+G +++GR I VR D R
Sbjct: 167 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE--PEGGSISKFAKRASAPHGSGESRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 342 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8214.16370.1 >prot_E_fasciculatus_S2_contig8214.16370.1 ID=prot_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=175bp QVYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPback to top mRNA from alignment at E_fasciculatus_S2_contig8214:177..866+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8214.16370.1 ID=mRNA_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8214:177..866+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8214:177..866+ >mRNA_E_fasciculatus_S2_contig8214.16370.1 ID=mRNA_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=525bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8214:177..866+ (Ectocarpus fasciculatus EfasUO2)back to top |