mRNA_E_fasciculatus_S2_contig821.16365.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig821.16365.1
Unique NamemRNA_E_fasciculatus_S2_contig821.16365.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: DHQ_synthase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6B2_9PHAE)

HSP 1 Score: 545 bits (1405), Expect = 7.400e-193
Identity = 291/308 (94.48%), Postives = 297/308 (96.43%), Query Frame = 1
Query:    1 MVRPRATGTTPIPSIAALSFGLAISCCFTSGFSFVPSTSGGRVQPRTAAA--GRHTTAAARRALTGTNMVATEPAAGLLKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            M RPRATGT+PIPS+A LSFGLAISC FTS FSFVPST GGRVQPRTAAA  GRHTTAAARRA TGT+MVATEPAAGLLKTVTVDL DRSYPIYIG+GILDSGDLLRRHVTSKKALVITNDK+GPLYLDKTVKILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQ VPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADM TLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCME+MAARDAGVLAEAVERSCINKANV
Sbjct:    1 MGRPRATGTSPIPSVATLSFGLAISCFFTSVFSFVPSTFGGRVQPRTAAAAAGRHTTAAARRARTGTSMVATEPAAGLLKTVTVDLGDRSYPIYIGDGILDSGDLLRRHVTSKKALVITNDKVGPLYLDKTVKILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQ-VPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMGTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMENMAARDAGVLAEAVERSCINKANV 307          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: 3-Dehydroquinate (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z318_9STRA)

HSP 1 Score: 358 bits (918), Expect = 6.840e-120
Identity = 184/240 (76.67%), Postives = 208/240 (86.67%), Query Frame = 1
Query:  199 MVATEPAAGLLKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            MVA+ P+  L  TV VDL  R+YPIYIGEGIL  GDLLR+HVTSK+ALVITND++GPLYLD+TV +L  GGV+VETVVLPDGEE+KS+EVL KI++ AL+ R+DR  TFVALGGGVIGDMVGFAAAIYQRGVKFVQ VPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAV+ADM TL++LPDRELASGIAEVVKYGLI+D+ FF WQE  +  + ARDA  L+EAV RSC NKA V
Sbjct:    1 MVASPPSKTLHSTVEVDLGSRTYPIYIGEGILREGDLLRKHVTSKRALVITNDRVGPLYLDETVAVLREGGVQVETVVLPDGEEYKSMEVLMKIMEAALTHRMDRTCTFVALGGGVIGDMVGFAAAIYQRGVKFVQ-VPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVIADMATLRTLPDRELASGIAEVVKYGLIRDAAFFEWQEARVGALRARDAETLSEAVRRSCENKAAV 239          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3U2_9STRA)

HSP 1 Score: 337 bits (864), Expect = 4.570e-111
Identity = 170/229 (74.24%), Postives = 194/229 (84.72%), Query Frame = 1
Query:  235 TVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEA-GGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            T+ VDL +R+YPIYIG+G+L+ G L+R+HV  KKALV+TND I P+YLDK V  LE  G +EVETVVLPDGEE+K++EVL K+LDKAL ARLDRK TFVALGGGVIGDM GFAAAIYQRGV F+Q VPTTLMAMVDS+VGGKT VNH LGKNMIGAFYQPQ VL D DTL SLPDRELASGIAEVVKYGLI+D++FF+WQE  M+ M ARD   LA A+ERSC NKA+V
Sbjct:   58 TLEVDLGERTYPIYIGQGLLEEGSLMRKHVKGKKALVVTNDLIAPIYLDKCVAALEKEGNIEVETVVLPDGEEYKNMEVLNKVLDKALQARLDRKCTFVALGGGVIGDMCGFAAAIYQRGVNFIQ-VPTTLMAMVDSSVGGKTGVNHHLGKNMIGAFYQPQCVLIDTDTLNSLPDRELASGIAEVVKYGLIRDADFFKWQEDNMDGMLARDPSTLATAIERSCQNKADV 285          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5P5V7_HETAK)

HSP 1 Score: 328 bits (841), Expect = 4.180e-107
Identity = 166/231 (71.86%), Postives = 192/231 (83.12%), Query Frame = 1
Query:  229 LKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGG-VEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            L+ V VDL+DRSYPIYIG  + D G+L+R+HV  KK LV+TND +GPLYLDK VK LE    +EVETVVLPDGEE K++EVL  I++KAL+ R+DRK TFVALGGGVIGDMVGFAAAIYQRGV F+Q VPTTLMAMVDS+VGGKTAVNHPLGKNMIGAFYQPQAV+ D  +L SLPDRELASG++EV+KYGLI+D+ FF WQE  ME + ARD   LA AV+RSC NKA V
Sbjct:   92 LEIVEVDLDDRSYPIYIGTDLYDDGELIRKHVKGKKVLVVTNDVVGPLYLDKIVKALEKDSQIEVETVVLPDGEENKTMEVLMMIMEKALATRMDRKCTFVALGGGVIGDMVGFAAAIYQRGVNFIQ-VPTTLMAMVDSSVGGKTAVNHPLGKNMIGAFYQPQAVVIDTASLNSLPDRELASGVSEVIKYGLIRDAPFFEWQEANMEQLLARDPAALAYAVKRSCENKAEV 321          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: DHQ_synthase (domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=D8TQJ6_VOLCA)

HSP 1 Score: 321 bits (822), Expect = 3.070e-105
Identity = 161/241 (66.80%), Postives = 194/241 (80.50%), Query Frame = 1
Query:  199 MVATEPAAGLLKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVK-ILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            + A E A+  +KTV VDL DRSYPIYIG G+L+ G+LLR+H+  K+ L++TN+ I PLYL++  K +LE G ++V+ V+LPDGEE+KSLEVL K+ DKAL  R+DR TTF+ALGGGV+GDM GFAAA YQRGV FVQ VPTT+M+ VDS+VGGKT VNHPLGKNMIGAFYQP+ VL D DTL SLPDRELASGI+EVVKYGLI+D+ FF W E  ME +  RD G +A AVERSCINKA V
Sbjct:    4 VAAPERASASMKTVHVDLGDRSYPIYIGAGLLNHGELLRKHIPGKRVLIVTNETIAPLYLERCRKALLEGGQLQVDDVILPDGEEYKSLEVLEKVWDKALECRMDRGTTFLALGGGVVGDMTGFAAACYQRGVHFVQ-VPTTVMSQVDSSVGGKTGVNHPLGKNMIGAFYQPRVVLVDTDTLASLPDRELASGISEVVKYGLIRDAPFFEWLEANMERLLERDPGAIAYAVERSCINKAEV 243          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: 3-dehydroquinate (synthase AroB n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z480_COCSC)

HSP 1 Score: 316 bits (810), Expect = 1.090e-103
Identity = 154/232 (66.38%), Postives = 190/232 (81.90%), Query Frame = 1
Query:  229 LKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGG--VEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            +KTV V L DRSYPIYIG+G+LD G+LL+RHV  K+ L++TN+ + PLYL++    L +GG  ++VE V+LPDGE++KSL+VL K+ DKAL +RLDR +TF+ALGGGVIGDM GFAAA YQRGV F+Q VPTT+MAMVDS+VGGKT VNHPLGKNMIGAFYQP+ VL D+DTL SLPDRELASGI+E++KYGLI+D   F W E  ME + ARDA  ++ A+ERSCINKA V
Sbjct:    1 MKTVEVPLGDRSYPIYIGQGLLDQGELLQRHVPGKRVLIVTNETVAPLYLERCRAALTSGGSGLQVEAVILPDGEQYKSLDVLQKVWDKALESRLDRNSTFIALGGGVIGDMTGFAAAAYQRGVHFIQ-VPTTVMAMVDSSVGGKTGVNHPLGKNMIGAFYQPKVVLVDVDTLNSLPDRELASGISEIIKYGLIRDPALFEWLEANMERLLARDAEAMSYAIERSCINKAEV 231          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: DHQ_synthase (domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BP02_9CHLO)

HSP 1 Score: 318 bits (814), Expect = 8.240e-103
Identity = 157/240 (65.42%), Postives = 192/240 (80.00%), Query Frame = 1
Query:  199 MVATEPAAGLLKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            + A E A+  +KTV VDL DRSYPIYIG+G+L+ G+LLR+H+  K+ L++TN+ I PLYL++    L  GG++V+ V+LPDGEE+KS++VL K+ DKAL ARLDR  TF+ALGGGV+GDM GFAAA YQRGV FVQ VPTT+MA VDS+VGGKT VNHPLGKNMIGAFYQPQ VL D DTL +LPDRELASGI+EV+KYGLI+D+ FF W E  ME +  RD   +A AVERSC+NKA V
Sbjct:   89 VAAPERASIAMKTVNVDLGDRSYPIYIGQGLLNQGELLRKHIPGKRVLIVTNETIAPLYLERCKAALTEGGLQVDEVILPDGEEYKSMDVLGKVWDKALEARLDRGATFLALGGGVVGDMTGFAAACYQRGVHFVQ-VPTTVMAQVDSSVGGKTGVNHPLGKNMIGAFYQPQVVLVDTDTLGTLPDRELASGISEVIKYGLIRDAAFFEWLEINMERLLERDPEAIAYAVERSCVNKAEV 327          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: DHQ_synthase (domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FE63_MICCC)

HSP 1 Score: 316 bits (809), Expect = 9.960e-103
Identity = 154/228 (67.54%), Postives = 189/228 (82.89%), Query Frame = 1
Query:  238 VTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGG-VEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            V VDL DRSYPIYIG G+LD+ DL+R+HV  + ALV+TN+ I PLYL++TV  LE+ G + VE V+LPDGE+ K+++VL +I DKAL A+LDR+TTFVALGGGVIGDM GFAAA YQRGV FVQ +PTT+M+MVDS+VGGKT VNHP GKNMIGAFYQP+ VL D+DTL++LPDRE +SG+AEVVKYGLI+D EFF WQE  +E + AR+A  L  A+E+SCINKA V
Sbjct:   63 VNVDLGDRSYPIYIGSGLLDNSDLIRKHVPGRTALVVTNETIAPLYLERTVAALESSGELRVEVVILPDGEQHKNIDVLMRIFDKALEAQLDRQTTFVALGGGVIGDMTGFAAASYQRGVHFVQ-IPTTVMSMVDSSVGGKTGVNHPAGKNMIGAFYQPRCVLVDIDTLETLPDREFSSGLAEVVKYGLIRDDEFFEWQEANVEKLMAREAATLIHAIEKSCINKAEV 289          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: DHQ_synthase (domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835VTN1_9CHLO)

HSP 1 Score: 313 bits (802), Expect = 2.290e-102
Identity = 154/231 (66.67%), Postives = 188/231 (81.39%), Query Frame = 1
Query:  229 LKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKT-VKILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            +KTV VDL DRSYPIYIG G+L+ G+LLR+H+  K+ L++TN+ I PLYL++    +LE G ++V+ VVLPDGEE+KS+EVL K+ DKAL +R+DR  TF+ALGGGV+GDM GFAAA YQRGV FVQ VPTT+MA VDS+VGGKT VNHPLGKNMIGAFYQP+ VL D DTL +LPDRELASGI+EV+KYGLI+D+ FF W E  M+ + ARD   +A AVERSCINKA V
Sbjct:    1 MKTVEVDLGDRSYPIYIGAGLLNQGELLRKHIPGKRVLIVTNETIAPLYLERVRAALLEGGKLQVDEVVLPDGEEYKSMEVLGKVWDKALESRMDRGVTFLALGGGVVGDMTGFAAACYQRGVHFVQ-VPTTVMAQVDSSVGGKTGVNHPLGKNMIGAFYQPRVVLVDTDTLATLPDRELASGISEVIKYGLIRDAPFFEWLEANMDRLLARDPEAIAYAVERSCINKAEV 230          
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Match: DHQ_synthase (domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GU80_9CHLO)

HSP 1 Score: 315 bits (807), Expect = 9.070e-102
Identity = 153/239 (64.02%), Postives = 194/239 (81.17%), Query Frame = 1
Query:  205 ATEPAAGLLKTVTVDLEDRSYPIYIGEGILDSGDLLRRHVTSKKALVITNDKIGPLYLDKTVK-ILEAGGVEVETVVLPDGEEFKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKFVQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSCINKANV 918
            A E A+  +K V VDL DRSYPIYIG G+L+ G+LLR+H+T K+ L++TN+ +GP+YL++  K +L+ G ++V+ V+LPDGE++KS++VL K+ +KAL  R+DR TTF+ALGGGV+GDM GFAAA YQRGV FVQ VPTT+MA VDS+VGGKT VNHPLGKNMIGAFYQP+ VL D DTL +LPDRELASGI+E++KYGLI+D+ FF W E  ME + ARD   +A AVERSCINKA V
Sbjct:   97 APEQASASIKMVHVDLGDRSYPIYIGAGLLEQGELLRKHITGKRVLIVTNETVGPIYLERCRKALLDGGQLQVDDVILPDGEKYKSIDVLEKVWNKALECRMDRGTTFLALGGGVVGDMTGFAAACYQRGVHFVQ-VPTTVMAQVDSSVGGKTGVNHPLGKNMIGAFYQPRVVLVDTDTLATLPDRELASGISEIIKYGLIRDAPFFEWLEASMERLLARDPEAIAYAVERSCINKAEV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig821.16365.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DHQ_synthase7.400e-19394.48domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
3-Dehydroquinate6.840e-12076.67synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Hypothetical4.570e-11174.24protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical4.180e-10771.86protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
DHQ_synthase3.070e-10566.80domain-containing protein n=2 Tax=Volvox TaxID=306... [more]
3-dehydroquinate1.090e-10366.38synthase AroB n=1 Tax=Coccomyxa subellipsoidea (st... [more]
DHQ_synthase8.240e-10365.42domain-containing protein n=1 Tax=Edaphochlamys de... [more]
DHQ_synthase9.960e-10367.54domain-containing protein n=1 Tax=Micromonas commo... [more]
DHQ_synthase2.290e-10266.67domain-containing protein n=1 Tax=Chlamydomonas sc... [more]
DHQ_synthase9.070e-10264.02domain-containing protein n=1 Tax=Volvox reticulif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig821contigE_fasciculatus_S2_contig821:197..3497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score559.3
Seed ortholog evalue1.1e-156
Seed eggNOG ortholog2880.D8LEE6
Model size918
KEGG rclassRC00847
KEGG koko:K01735
KEGG ReactionR03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019632,GO:0019752,GO:0031410,GO:0031982,GO:0031984,GO:0032787,GO:0033587,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:0097708,GO:0098791,GO:1901576,GO:1901615,GO:1901617
Exons5
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
EC4.2.3.4
Cds size918
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.4112775-CDS-E_fasciculatus_S2_contig821:196..3491696842482.4112775-CDS-E_fasciculatus_S2_contig821:196..349Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 197..349 -
1696842482.425714-CDS-E_fasciculatus_S2_contig821:898..10571696842482.425714-CDS-E_fasciculatus_S2_contig821:898..1057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 899..1057 -
1696842482.4442096-CDS-E_fasciculatus_S2_contig821:1335..15481696842482.4442096-CDS-E_fasciculatus_S2_contig821:1335..1548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 1336..1548 -
1696842482.457529-CDS-E_fasciculatus_S2_contig821:1895..19891696842482.457529-CDS-E_fasciculatus_S2_contig821:1895..1989Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 1896..1989 -
1696842482.4686337-CDS-E_fasciculatus_S2_contig821:3198..34971696842482.4686337-CDS-E_fasciculatus_S2_contig821:3198..3497Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 3199..3497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig821.16365.1prot_E_fasciculatus_S2_contig821.16365.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig821 197..3497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig821.16365.1

>prot_E_fasciculatus_S2_contig821.16365.1 ID=prot_E_fasciculatus_S2_contig821.16365.1|Name=mRNA_E_fasciculatus_S2_contig821.16365.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=306bp
MVRPRATGTTPIPSIAALSFGLAISCCFTSGFSFVPSTSGGRVQPRTAAA
GRHTTAAARRALTGTNMVATEPAAGLLKTVTVDLEDRSYPIYIGEGILDS
GDLLRRHVTSKKALVITNDKIGPLYLDKTVKILEAGGVEVETVVLPDGEE
FKSLEVLTKILDKALSARLDRKTTFVALGGGVIGDMVGFAAAIYQRGVKF
VQQVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSL
PDRELASGIAEVVKYGLIKDSEFFRWQEGCMEDMAARDAGVLAEAVERSC
INKANV
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mRNA from alignment at E_fasciculatus_S2_contig821:197..3497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig821.16365.1 ID=mRNA_E_fasciculatus_S2_contig821.16365.1|Name=mRNA_E_fasciculatus_S2_contig821.16365.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3301bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig821:197..3497- (Ectocarpus fasciculatus EfasUO2)
ATGGTTCGACCGAGGGCGACTGGCACGACTCCCATACCCAGCATCGCGGC CCTGTCTTTTGGACTCGCCATTTCGTGCTGCTTTACGTCTGGGTTCTCCT TTGTTCCCAGCACCTCCGGCGGTCGGGTGCAACCTCGCACAGCAGCAGCC GGACGACATACAACAGCAGCAGCTAGGAGAGCTCTGACAGGCACCAACAT GGTCGCCACGGAGCCTGCTGCTGGGCTGCTGAAGACCGTGACGGTTGATC TCGAAGACCGCTCGTACCCGATCTACATCGGGGAGGGCATCTTGGACAGG TGTGTCTCCCGGGTTGAACTCGCTCGATAGTTGAGCCCTCAAGCAGACCC CAGAGAGGTTAGCATGTGGGGTACCGACAGCAGTAAGTTGTGCCGTGGTG CTGAATGCGGCAACAAATTTTCGCTGTTCCGTATCTAGTCTGCGCAAGCG AAGTCATGTCATGTCCTGGCTGTGTTGTAGGTTCGGACACGTGAGCTAGC GTTCGTCTCCCCTATTGAATCTCAAAGAGGCTGCATGTTGTATCATGTCA CATCTATAGTAGCATAGACTACCGTGTTTCAACGCTCCATCCCGCGTATT CCAGCGCCGTATGATAGTACTGCTGTACCACATTTTGTCTGTCTTTACTT GTAGAGGTCGTAACAAACCGTCCATGTCAACGTGATGGGTCCACGAAGTT CAGGTATAGGCCACAGACTCTGCGTTGTGTGCGGCGACGGACCTACAAGG GCAACTGACCATCCACGAAGAGTTAGACTAGTTCTCCAAGATTTCTCCTC TCCATGGGTGCTGGTCCTTCCTGCGGGCGCATCAGGCATCAGGCATACAG AACGCTCCACATCAGTAACAAGTTCCATTTTAGCATCTTGACCATAAAGA GCAGGCGCTAACTTAATAACCCTACACTATAACCTCTATAGTCGACATTA GGTTACCTGCCCGACAGAGGACACAATAATCGAGCCTTTCAGGCAAGACG AAGAGGCTCTTCAGCTGGGGCGACGGGCCCGTTTAACAACATCAGCCTGC CCCCAGTACAACGAATGTCCAGCTCCCAGTACAACTAAAGAATGTCCAGG TGTAACCAAGGATGACGTACAGCGCCTTGCCCAAGCGCAAGCCGACCATG CGCAGAGGCCTACGTCTAACAAGCAGCGGCCTTGCCACAACGGCCGAAGT TATGTGTACGGTACCCGGAAGCAGAGTAGCCTTTTGGTGCTTTTGCTTTG GAGTCGTGTTCTACGGGGTTAACTCCGCTGGGTACGGGGTAAACTCAAGT GAAGTTCTGCACGAAGCGCACCCTTGAAATGATCCACCCCCCGAAGTTCT TTTGCAAAACGCTTAATTCCCTTTACTTGCACCTCAGAGATGACCTTAAA TCTTCCACACCTTGCCGCCTTCTCACGGGAAAAAACACCCCGTGCGTCTT CTCCCCTCCCACCCCCCGCCCTCGGCTCGTACACGACCCGTAACGCCAAC TGGCTCAGTGGAGATCTATTGCGCCGCCACGTGACGTCGAAGAAAGCTCT GGTCATCACCAACGACAAGATTGGCCCCCTCTACTTGGACAAGACTGTCA AGGTGTGGCTTGTCGGTGCTGAAGTCACAGCTCAAGAGTCTGGAAGACAC TGTAGCTTGGCCGGCCTCCCTCGCACCTTCTGGTTCGCCTTCGTGCTGAT TGGAGACAAGTTCTGCTCATCCTTTCTCAGGTTGCTTGCCCCCTCGAGCT GAAACCACGCTTTGTGGGCAACATATACCCCCCTTTTCGCACCCACCCGA CCCCTATTAATCTGTCAAACCCGGAGCACACGGATATAGCGTTTTATACT CACCATTATTCAACAGACAAGGGTGCCATGCCCCCGTCCTCTCTCGCTGT ATTCTGCGCCTCCTCCAACCGTCCCCACCAAACGGCGAAAAACGACAAGA TTCTTGAGGCCGGCGGCGTGGAAGTTGAAACCGTCGTCCTGCCGGACGGA GAGGAGTTCAAGAGCCTGGAAGTCCTCACCAAGATCCTGGACAAGGCTCT GTCGGCGCGGCTCGACCGAAAGACGACCTTCGTGGCCCTGGGCGGGGGGG TGATCGGGGACATGGTTGGGTTCGCGGCCGCGATCTACCAGAGGGGGGTC AAGTTCGTGCAGGTGTGGTGTTGTTTCCCCCCTTCCGGCTGTTGCATCTT ACGACGGCTACCTCTGGACAACGTACTACAATAGTCTCCGCTTCAAGGAC ACTCGCGATCTTTCTTTGAAAAAAGTGTGTCCTTCCAGCGAGGAAGTGTC CGTACAAGTGTACCCCCGTGTTGTTTTTTCATTCTGCGGTGACCCATGCT CCTTAAAAAAAGCGGTAGCCTAGAGGCGGCCACACCTGACAGCAATCACG ACATCATCGTCCCTCTCGTCGTCGTCGCTGCTGCTTTGAGCAGGTTCCCA CGACCCTGATGGCGATGGTAGACTCGGCGGTCGGCGGTAAGACGGCGGTT AACCACCCTCTAGGCAAGAACATGATCGGCGCTTTTTACCAGCCGCAGGC GGTGCTGGCCGACATGGACACCCTCAAGAGCCTCCCTGACAGAGAGTTGG TGAGATTCGCAACCTCGACATGAGCAGGGGGGCATGCTCTCGTGCGTCGT GGGGGGGGGGGGGGGGGGAGGAGGGCTGTAACTAGGGTTGGGGTTAGATG GGGGTTGTGAGTGTGCCTGGCGATATTGGCAGGATGATCCCCTCAAAAAC CTTTCTGGTAGGAATTTGTTTCTATAGGGGGGGGATGAATGTGTCGACAG CATATTTTTGGCACTCTTTGCTGTTGCTGTCGTCTCTTTGCTGTTGCTGT CGTCTCTTTGCTGTTGCTGTCGTCTTTTTACTGTTGCTGTCGTCGTGGTC AGGGTGAAGGCTCTTGTTGCTCATGGAACACCACAGGCTCTATCGGGGAT GCTTGGTTCTCGCGACACGGGGTCCCAGCGTAGAGATCTCAACTACTCAG TACCTTGCCTAAACCCGCGAGTGCCGATCAGGTACGTATTTGTTCATTTC GCGGGGGGCCGCCGCCCGGCCAATCAAGCTCTGTCGCCGCTGCTATGTGG CGTGGGTGCTGGTGTGCTGATTGCTGCTGCCGACACCCGATTTTCCAGGC GTCCGGTATCGCCGAGGTGGTCAAGTACGGCCTGATCAAGGACAGCGAGT TCTTCCGGTGGCAAGAGGGGTGCATGGAGGACATGGCGGCTCGCGACGCG GGTGTGCTTGCCGAGGCGGTGGAGAGGTCCTGCATCAACAAGGCCAACGT A
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig821:197..3497-

>mRNA_E_fasciculatus_S2_contig821.16365.1 ID=mRNA_E_fasciculatus_S2_contig821.16365.1|Name=mRNA_E_fasciculatus_S2_contig821.16365.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig821:197..3497- (Ectocarpus fasciculatus EfasUO2)
ATGGTTCGACCGAGGGCGACTGGCACGACTCCCATACCCAGCATCGCGGC
CCTGTCTTTTGGACTCGCCATTTCGTGCTGCTTTACGTCTGGGTTCTCCT
TTGTTCCCAGCACCTCCGGCGGTCGGGTGCAACCTCGCACAGCAGCAGCC
GGACGACATACAACAGCAGCAGCTAGGAGAGCTCTGACAGGCACCAACAT
GGTCGCCACGGAGCCTGCTGCTGGGCTGCTGAAGACCGTGACGGTTGATC
TCGAAGACCGCTCGTACCCGATCTACATCGGGGAGGGCATCTTGGACAGT
GGAGATCTATTGCGCCGCCACGTGACGTCGAAGAAAGCTCTGGTCATCAC
CAACGACAAGATTGGCCCCCTCTACTTGGACAAGACTGTCAAGATTCTTG
AGGCCGGCGGCGTGGAAGTTGAAACCGTCGTCCTGCCGGACGGAGAGGAG
TTCAAGAGCCTGGAAGTCCTCACCAAGATCCTGGACAAGGCTCTGTCGGC
GCGGCTCGACCGAAAGACGACCTTCGTGGCCCTGGGCGGGGGGGTGATCG
GGGACATGGTTGGGTTCGCGGCCGCGATCTACCAGAGGGGGGTCAAGTTC
GTGCAGCAGGTTCCCACGACCCTGATGGCGATGGTAGACTCGGCGGTCGG
CGGTAAGACGGCGGTTAACCACCCTCTAGGCAAGAACATGATCGGCGCTT
TTTACCAGCCGCAGGCGGTGCTGGCCGACATGGACACCCTCAAGAGCCTC
CCTGACAGAGAGTTGGCGTCCGGTATCGCCGAGGTGGTCAAGTACGGCCT
GATCAAGGACAGCGAGTTCTTCCGGTGGCAAGAGGGGTGCATGGAGGACA
TGGCGGCTCGCGACGCGGGTGTGCTTGCCGAGGCGGTGGAGAGGTCCTGC
ATCAACAAGGCCAACGTA
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