mRNA_E_fasciculatus_S2_contig8204.16361.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8204.16361.1
Unique NamemRNA_E_fasciculatus_S2_contig8204.16361.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8204.16361.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY7_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 2.700e-105
Identity = 258/421 (61.28%), Postives = 273/421 (64.85%), Query Frame = 1 
Query:    4 LDSITTSSVVTLVPCS-LPNITARYSTPPPTPGLHCGFRHNEASLHTERLCNRWAAAAXXXXXXXAIKARAPPCRFYARGLCTKGNACPFVHAPSGQQAPAERTAPESSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQKGGAAGKCEAGEAERPGKVGVSNSGGGLGVSVEADAATKRRAAEILQKHRLTSSAPAMEAGSRGGMRVRGEPRTQPSGKKICTETSGQRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEALTASCTGGAEEAPACEGAVVHAPSPKQQAIEGTPSTSARAATKAVGNLQDTGRPEGARSTSREPADXXXXXXXXXXXXXXXXXXXQLPVSAGSDAP-LPTSCATTAAVVASDKEVLLPSRSGSA 1260
            LDSI T SVV   PCS +P IT+ YS P   PG+HCGFRHNEAS HTERLCNRWAAA XXXXXXX IKARAPPCRFYARGLCTKG ACPF HAPS QQAPAERTAPESSR          XXXXXXXXXXXXXXXXXXXXXX            G  ERP K  V NSGGGLGVSVEAD A KRRAAEILQKHRLTSS PA EAGSRGGM V+G  RTQPS KKICT+TSGQRQP                                                                     GAEEAPACEGAV+HAPSPK+QAIE TP T+ARAATKA+G LQ+TGR EGA  TSR+PAD  XXXXX               VSAG+DAP +PTSCATTAAVVA+DKE +LPSRSGSA
Sbjct:    2 LDSIMTRSVV---PCSYVPTITSPYSIPH-IPGVHCGFRHNEASRHTERLCNRWAAAXXXXXXXX-IKARAPPCRFYARGLCTKGKACPFFHAPSAQQAPAERTAPESSRRPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTERPRKTVVKNSGGGLGVSVEADPAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHVKGATRTQPSDKKICTDTSGQRQPRPPTGRHSGHSSTALASPPEAAEALSKGRTIPADNNGKNTGAKTGKRVGEQEE--------------AAGAEEAPACEGAVLHAPSPKKQAIEETPPTTARAATKALGTLQNTGRAEGATPTSRKPADEQXXXXXH--------------VSAGNDAPAVPTSCATTAAVVANDKEEILPSRSGSA 389
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BLAST of mRNA_E_fasciculatus_S2_contig8204.16361.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 6.850e-61
Identity = 193/423 (45.63%), Postives = 203/423 (47.99%), Query Frame = 1 
Query:   97 GLHCGFRHNEASLHTERLCNRWAAA-----------------------------------------------------------------------------------------------------------AXXXXXXXAIKARAPPCRFYARGLCTKGNACPFVHAPSGQQAPAERTAPESSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQKGGAAGKCEAGEAERPGKVGVSNSGGGLGVSVEADAATKRRAAEILQKHRLTSSAPAMEAGSRGGMRVRGEPRTQPSGKKICTETSGQRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEALTASCTGGAEEAPACEGAVVHAPSPKQQAIEGTPSTSARAATKAVGNLQDT 1044
            G+HCGFRHNEAS HTERLCNRWAA                                                                                                             XXXXXXX IKARAPPCRFYARGLCTKG ACPF HAPS QQ PAERTAPESS           XXXXXXXXXXXXXXXXXXXXXX    GAAGK E G  ERP K+ +++ GGGLGVSVEADAA KRRAAEILQKHRLTSS PA EAGSRGGM +RG  RTQPS KK C ETSGQRQP                                                                     GAEEAPACEGAV+ APSPK+QA E  PST+ARAATKAVG LQ+T
Sbjct:   18 GVHCGFRHNEASRHTERLCNRWAAGYTCDGRCNLRHPSAAEIAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEXXXAEAXXXXXXAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKARAPPCRFYARGLCTKGRACPFFHAPSAQQVPAERTAPESSWGPAPTTLRGAXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGKREPGVTERPRKMVLNSGGGGLGVSVEADAAAKRRAAEILQKHRLTSSTPAKEAGSRGGMHIRGAARTQPSDKKSCAETSGQRQPRPPTGRHSGHSSTALASPLEAAEASSKGRTIPADNNGKNTGAKTGKRVGEQEE--------------AAGAEEAPACEGAVLLAPSPKKQATEEIPSTTARAATKAVGKLQNT 426
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8204.16361.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
C3H1-type2.700e-10561.28domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.850e-6145.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8204contigE_fasciculatus_S2_contig8204:3036..6446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2573
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006050.1
Cds size660
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.1325529-UTR-E_fasciculatus_S2_contig8204:3035..32041696842482.1325529-UTR-E_fasciculatus_S2_contig8204:3035..3204Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8204 3036..3204 +
1696842482.1429431-UTR-E_fasciculatus_S2_contig8204:3726..41381696842482.1429431-UTR-E_fasciculatus_S2_contig8204:3726..4138Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8204 3727..4138 +
1696842482.1534684-UTR-E_fasciculatus_S2_contig8204:4454..44761696842482.1534684-UTR-E_fasciculatus_S2_contig8204:4454..4476Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8204 4455..4476 +
1696842482.17531-UTR-E_fasciculatus_S2_contig8204:5136..64461696842482.17531-UTR-E_fasciculatus_S2_contig8204:5136..6446Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8204 5137..6446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.1645107-CDS-E_fasciculatus_S2_contig8204:4476..51361696842482.1645107-CDS-E_fasciculatus_S2_contig8204:4476..5136Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8204 4477..5136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8204.16361.1prot_E_fasciculatus_S2_contig8204.16361.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8204 4477..5136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8204.16361.1

>prot_E_fasciculatus_S2_contig8204.16361.1 ID=prot_E_fasciculatus_S2_contig8204.16361.1|Name=mRNA_E_fasciculatus_S2_contig8204.16361.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=220bp
MEAGSRGGMRVRGEPRTQPSGKKICTETSGQRQPPPPPPNGRHSGHSSAA
FSSPPEAVAAVAAASSKGRTMLADNSGKKAEAKKRKGAEQEEAAEALTAS
CTGGAEEAPACEGAVVHAPSPKQQAIEGTPSTSARAATKAVGNLQDTGRP
EGARSTSREPADEQQQQQQQQQRQQGQQHGQQLPVSAGSDAPLPTSCATT
AAVVASDKEVLLPSRSGSA*
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mRNA from alignment at E_fasciculatus_S2_contig8204:3036..6446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8204.16361.1 ID=mRNA_E_fasciculatus_S2_contig8204.16361.1|Name=mRNA_E_fasciculatus_S2_contig8204.16361.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8204:3036..6446+ (Ectocarpus fasciculatus EfasUO2)
GTGCTTGATTCGATCACGACAAGCTCGGTAGTTACCTTAGTTCCCTGCTC
CTTACCGAATATCACCGCACGGTACTCAACGCCACCACCCACCCCAGGTC
TTCACTGTGGGTTTCGACACAACGAGGCGTCCCTTCACACGGAGCGCTTG
TGCAACAGATGGGCCGCAGGTTAGTACTGAGGTTCAAAGAGTCTCTCAGG
GCGCCTCACAGCAGCTGTACGCAGGTACCGCACGTACCCCAAACTTCCCT
TGCTCCCTTCGCCATGTGGCGCACATGTATGTGCAAACGTTCACCACGCA
AGCAACCAGTAAGACGTAAGTGCGACATGAATACAACGTTCATGGCCCTT
TCTACGTACCGGCGACGTTTCATGGGTTATTCTAGTGTTGTGTGGTATTC
GAGAGCACGCACCCTCCCCCACTCTGACTCCACTCTTTACTTCTACCCCG
TGCTCCGCCACTTTGTTGTCCACGCCTCGGGCAGGGTACACGTGCGACGG
CAGGTGCAACCTCCGGCACCCGTCCGCCGCGGAAATCGCCGCTCTGGCCG
CCGCCCCACCACCCGCCTCGGCAGCAACAGCAGCAGCACTCGCCCGATCT
TCTCCGTCCAGGCAACAACCGCCGAACAATTCGCGGCCGCCAGCAGCAGC
AGCAGCAGCGGCGGCAGCGGCAGCGGCGGCAGCGGCAGCAGCGGCGGCGG
CGGCGGCAACGGCGGCGGCTATCAAGGCCAGAGCTCCCCCTTGTCGGTTC
TACGCCAGAGGGCTGTGCACCAAGGGCAATGCGTGTCCCTTTGTGCACGC
GCCCTCCGGCCAGCAAGCGCCAGCAGAGCGCACGGCTCCGGAGAGCAGCC
GGCGGCCAGCCCCTAGCACTCTTCGAGGGGCGGCGGCAGCGGCCCGACAG
GCTGCCGCTGCGTCCGGAGCGGGTGCCGCCTCGGGCGAGGGGTGGGGACA
GCAGAAGGGCGGGGCTGCGGGGAAGTGTGAAGCGGGCGAGGCAGAACGTC
CTGGGAAGGTGGGGGTGAGCAATAGTGGTGGCGGCCTTGGTGTTTCGGTG
GAAGCGGATGCTGCAACGAAGAGGCGCGCAGCGGAGATACTCCAGAAGCA
CAGGTGAGTGCCTGATGTTTCGAGGAATTTTTCTGTTTCGTGGATAAATT
ATACGTATTCCGCGTTCGGTTCCCCAAGACTATTTTACGGCAAGTGGAAA
CGTTCAACGAGGCGTTCCGCTTGCCTTGACCATACCTCTCGTGGTACATC
AAACACCTAGAAACCCGTATTTTATGTCTAGTCTGTGAGTGGTTTCGGAA
CCATTTTTTTTATGGATAGCCTACGAAACTGTTGCGCAAACATGGCCGCA
CAAGAGCTTCTTCTTTTTTGCACCGATTTGCTGTACCCCGTCCCTTATCC
CGACTCTTCTCTCCGCAAGGCTGACTTCGAGTGCACCGGCCATGGAGGCG
GGATCGCGAGGGGGGATGCGCGTTAGGGGGGAACCTCGGACTCAGCCCAG
CGGCAAGAAAATCTGCACAGAAACCTCGGGACAGCGGCAGCCGCCGCCGC
CGCCGCCAAATGGTCGTCATAGCGGCCACAGCTCTGCGGCATTTTCATCA
CCACCAGAAGCGGTAGCAGCAGTAGCAGCAGCATCGTCGAAGGGCCGCAC
GATGCTGGCGGACAACAGCGGTAAGAAAGCTGAGGCGAAAAAAAGGAAAG
GAGCAGAGCAGGAAGAGGCAGCTGAAGCGCTGACGGCAAGTTGTACAGGT
GGAGCGGAGGAGGCCCCCGCTTGTGAGGGCGCAGTTGTGCACGCCCCCTC
CCCCAAGCAGCAGGCGATTGAAGGAACACCCTCGACATCAGCACGGGCTG
CAACGAAAGCGGTGGGCAATTTGCAAGACACTGGAAGGCCGGAGGGGGCA
AGGTCGACGAGTCGCGAACCCGCGGATGAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCGGCAACAGGGGCAGCAGCACGGGCAGCAGCTGCCCGTTAGTG
CTGGCAGCGATGCCCCCTTACCAACATCATGTGCCACGACGGCCGCCGTC
GTTGCCAGTGACAAAGAGGTATTACTTCCGAGCCGAAGCGGCAGCGCTTA
GGTCTGCGTGGAGGGCCGGATGGCCGTTGGTGCTACAGCCACTGGTGATG
TCACTGACACTTTGGGGTGGTGGCGGTGACGATTAGCCTAGTGGCGGGGA
GGAGGGTCCCCTACCGCTACGCTAGCAAGGGGGGTGGATAGAGCGGACGC
TCGGCAGTGCTACCGCCACCGCCGCCGCCACCGCCACGCGCGATAAGTGC
GTCTTGTTCCCTCGGAAGCGACAGGCCTCTTGGGGATGGGAAGGTTGGGT
CCAGGGCACACGGTGTTTCACGCCGGAGCAAAAGTATCCGGTGTCCGAGC
GCTCAAAATTTGGGAGAGTGAAGTTTGGAGCGTGTGCCGGAGCTTGAGAG
CGGTCAGTTGGACGTGTAGCGCCTGCACTGGTGCAGACGGCGGGAGGAGC
AATCATAATGGTTTGTGATGAGTGGTCTACAAGTAGTCGTGTTTTTTCTT
TACGGGATGTGGTGTTGTGAAAGAGGGTCTGTCTCTTTGTCGGTCGACGC
CAACGTTCAATGAGAGAATCGTCTTCAATAGACGTTCAAGAGATGTGGCC
CTTTTTGATGGCCATCTCCACAACAGCGGCGTTGTTTTTTCGTGGGGTAT
GTCCTCCTGGTGATGGTAGACTTAGTTGCTGGTTTGCAGCCAACCCTTTC
TGAGACCACCACCACCACCTTAGACAAAGTCTTAGGAAATGAGTGTGCTT
CATGGCCGTAGGATTGTTGAGAATAGACGAACATAATACCCCAGAGACAG
TACCTGCGAGGGAGACTTGTGTACTGCGTTGCGGGGGAGGTAGTGCTTTG
AGCCTCAATCTGGGACTCGGAATAGAGACAAGAGGGCCAATCGGGTAACG
TTCCGATGAAGTTGTTCTATTATACGAATTCGTTAGTATACACACTCGAC
TTTAGCGGTCGACGAGGGAACGGGGTGACTCAACCCTTCTCGCCAAAAAA
ATTACCAGGCAAGCACTGCTGTAGTACCTGGGGCATCAAACAAAATAGAA
AGTAGAAAAGCTCCCGTGAGTGATTTGTCGACGGTGTAAACCCGGCTGAT
TCGTCACAAAGGCAGCACACACTGTGAGATGTGTAGATTGGCGCCGGAGT
ATAGTACATGGGATGAAGAACACAATAACACATCGTGCGTTGTGACATGG
TGCAATTCAGAGTAGTGACGCGTGTTGGTCTGATGCTTGTTTTGTGCCGT
GCTATGGGGAGGAAAGGGTGATGATGATTCGGTCGTGGCTCATGTTTCCT
GAGACGCAACAGTCGGGTATGTTGGGTTTGGTGATGCGATTACCAACAAC
GCACGACATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8204:3036..6446+

>mRNA_E_fasciculatus_S2_contig8204.16361.1 ID=mRNA_E_fasciculatus_S2_contig8204.16361.1|Name=mRNA_E_fasciculatus_S2_contig8204.16361.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=660bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8204:3036..6446+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGCGGGATCGCGAGGGGGGATGCGCGTTAGGGGGGAACCTCGGAC
TCAGCCCAGCGGCAAGAAAATCTGCACAGAAACCTCGGGACAGCGGCAGC
CGCCGCCGCCGCCGCCAAATGGTCGTCATAGCGGCCACAGCTCTGCGGCA
TTTTCATCACCACCAGAAGCGGTAGCAGCAGTAGCAGCAGCATCGTCGAA
GGGCCGCACGATGCTGGCGGACAACAGCGGTAAGAAAGCTGAGGCGAAAA
AAAGGAAAGGAGCAGAGCAGGAAGAGGCAGCTGAAGCGCTGACGGCAAGT
TGTACAGGTGGAGCGGAGGAGGCCCCCGCTTGTGAGGGCGCAGTTGTGCA
CGCCCCCTCCCCCAAGCAGCAGGCGATTGAAGGAACACCCTCGACATCAG
CACGGGCTGCAACGAAAGCGGTGGGCAATTTGCAAGACACTGGAAGGCCG
GAGGGGGCAAGGTCGACGAGTCGCGAACCCGCGGATGAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGGCAACAGGGGCAGCAGCACGGGCAGCAGCTGC
CCGTTAGTGCTGGCAGCGATGCCCCCTTACCAACATCATGTGCCACGACG
GCCGCCGTCGTTGCCAGTGACAAAGAGGTATTACTTCCGAGCCGAAGCGG
CAGCGCTTAG
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