mRNA_E_fasciculatus_S2_contig8202.16359.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8202.16359.1
Unique Name	mRNA_E_fasciculatus_S2_contig8202.16359.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: CPSF_A (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.140e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query:    1 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR
Sbjct:  139 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 192

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.750e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1

Query:   13 DGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRFVWRI 177
            D  R+ +  GT+DGG GAV PV+ER FRRLYALQG++ NAL  +GA N R  WR+
Sbjct:  427 DCRRFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVR-GWRL 480

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 63.2 bits (152), Expect = 3.640e-10
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1

Query:    1 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            G  R G R  ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR
Sbjct:  280 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 332

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.810e-10
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1

Query:    1 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            G  R G R  ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR
Sbjct: 1836 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 1888

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6V7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.510e-10
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1

Query:   22 RYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            R+     +LDG  GAV+PVDE  FRRLYALQGI+ NAL H  A NPR
Sbjct:  116 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 162

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC30_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-9
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1

Query:   40 GTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            G+LDG  G ++P DER F+RLYALQGI+ NAL H  A NPR
Sbjct:   15 GSLDGSAGVIVPTDERPFKRLYALQGILINALPHVAALNPR 55

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.780e-9
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1

Query:   22 RYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            R+     +LDG  GAV+PVDE  FRRLYALQGI+ NAL H  A NPR
Sbjct:  350 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 396

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.680e-9
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1

Query:   25 YCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            Y  L  T +GGLG ++PV ER+FRRLY LQ IM NAL  N   NPR
Sbjct: 1372 YVTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1417

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: CPSF_A (domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FV89_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.560e-8
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1

Query:   25 YCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            Y  L  T +GGLG ++PV ER+FRR+Y LQ IM N L  N   NPR
Sbjct:   51 YVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMINVLPQNAGLNPR 96

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BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Match: Aste57867_14310 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.620e-8
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1

Query:   25 YCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 162
            Y  L  T +GG+G ++PV ER+FRRLY LQ IM NAL  N   NPR
Sbjct: 1367 YVTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1412

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
CPSF_A	1.140e-29	100.00	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Hypothetical	5.750e-11	58.18	protein n=2 Tax=Corethron hystrix TaxID=216773 Rep...	[more]
Cleavage	3.640e-10	55.56	and polyadenylation specificity factor subunit 1 n...	[more]
Uncharacterized	3.810e-10	55.56	protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta...	[more]
Hypothetical	8.510e-10	61.70	protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep...	[more]
Hypothetical	1.600e-9	63.41	protein n=1 Tax=Florenciella parvula TaxID=236787 ...	[more]
Hypothetical	1.780e-9	61.70	protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep...	[more]
Uncharacterized	8.680e-9	58.70	protein n=1 Tax=Aphanomyces euteiches TaxID=100861...	[more]
CPSF_A	1.560e-8	54.35	domain-containing protein n=7 Tax=Aphanomyces asta...	[more]
Aste57867_14310	1.620e-8	56.52	protein n=1 Tax=Aphanomyces stellatus TaxID=120398...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8202	contig	E_fasciculatus_S2_contig8202:679..858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	116.3
Seed ortholog evalue	4.9e-24
Seed eggNOG ortholog	2880.D7G8W9
Model size	180
KEGG ko	ko:K14401
KEGG Pathway	ko03015,map03015
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	mRNA cleavage
EggNOG OGs	COG5161@1,KOG1896@2759
Cds size	180
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019,ko03021

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842482.0682697-CDS-E_fasciculatus_S2_contig8202:678..858	1696842482.0682697-CDS-E_fasciculatus_S2_contig8202:678..858	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8202 679..858 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8202.16359.1	prot_E_fasciculatus_S2_contig8202.16359.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8202 679..858 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8202:679..858+
coding sequence from alignment at E_fasciculatus_S2_contig8202:679..858+

protein sequence of mRNA_E_fasciculatus_S2_contig8202.16359.1

>prot_E_fasciculatus_S2_contig8202.16359.1 ID=prot_E_fasciculatus_S2_contig8202.16359.1|Name=mRNA_E_fasciculatus_S2_contig8202.16359.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGA
ANPRFVWRI*

mRNA from alignment at E_fasciculatus_S2_contig8202:679..858+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8202.16359.1 ID=mRNA_E_fasciculatus_S2_contig8202.16359.1|Name=mRNA_E_fasciculatus_S2_contig8202.16359.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8202:679..858+ (Ectocarpus fasciculatus EfasUO2)
GGTAACCTGAGGGACGGTGCACGTTACTGCCTCCTCGCCGGCACCCTCGA
CGGTGGGCTTGGGGCAGTCCTTCCCGTAGATGAACGCGTCTTCCGAAGGC
TGTACGCGCTTCAGGGCATCATGAGCAACGCGCTCGGCCACAACGGTGCA
GCCAACCCAAGGTTTGTGTGGAGGATTTGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8202:679..858+

>mRNA_E_fasciculatus_S2_contig8202.16359.1 ID=mRNA_E_fasciculatus_S2_contig8202.16359.1|Name=mRNA_E_fasciculatus_S2_contig8202.16359.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8202:679..858+ (Ectocarpus fasciculatus EfasUO2)
GGTAACCTGAGGGACGGTGCACGTTACTGCCTCCTCGCCGGCACCCTCGA
CGGTGGGCTTGGGGCAGTCCTTCCCGTAGATGAACGCGTCTTCCGAAGGC
TGTACGCGCTTCAGGGCATCATGAGCAACGCGCTCGGCCACAACGGTGCA
GCCAACCCAAGGTTTGTGTGGAGGATTTGA