mRNA_E_fasciculatus_S2_contig820.16357.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig820.16357.1
Unique NamemRNA_E_fasciculatus_S2_contig820.16357.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.080e-59
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGR 288
            LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGR
Sbjct:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGR 96
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BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.020e-41
Identity = 71/97 (73.20%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR--AMGGRGR 288
            LPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R  + GGRGR
Sbjct:   16 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQETRNASRGGRGR 112
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BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.500e-41
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGG 279
            LPLSLL+TAQ  PMLVELKNGDTYNGRLD CD+WMNIKL+DVI+TSRD D+F K+ EVYVRG SIKY+TIP+EVL+MV EE+  KEKRA  G
Sbjct:    2 LPLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93
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BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.580e-40
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 267
            LPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI L++VI TSRD D+F K+ E Y+RGNSIKY+ IPE+V+D+VQEEDL +E R
Sbjct:   15 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEEDLKQESR 102
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G4_PHYRM)

HSP 1 Score: 137 bits (346), Expect = 4.560e-39
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK-EKRAMGGRGR 288
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EEDL++ +++A  GRGR
Sbjct:    1 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDLNRRDRQANRGRGR 96
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BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.180e-39
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEK 264
            LPLSLLKTAQG PMLVELKNGDTYNGRL +CD+WMNI L+DVI TSRD D+F K+ E YVRGNSIKY+ +PEEV+DMV EEDL +E+
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88
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BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZVC6_PHYSP)

HSP 1 Score: 138 bits (348), Expect = 6.550e-39
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSK-EKRAMGGRGR 288
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK +++A  GRGR
Sbjct:    4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQANRGRGR 99
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.000e-39
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKE----KRAMGGRG 285
            LPLSLLKTAQG PMLVELKNGDTYNGRL +CDSWMNI L++VI TSRD D+F ++ E Y+RGNSIKY+ IP+EV+DMV EE + KE     R  GGRG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRGRGGRG 99
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2A9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.450e-39
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRA--MGGRGR 288
            LPLSLL+TAQG PMLVELKNGDTYNGRL NCDSWMNI LK+VI TSRD D+F K+ E Y+RGNSIKY+ IPEEV+DMV E++   +K +    GRGR
Sbjct:   10 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLKEVICTSRDGDRFWKLAECYIRGNSIKYLRIPEEVIDMVPEDNFKADKHSGRHAGRGR 106
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Match: U6 (snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.120e-37
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    4 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKR 267
            LPLSLLKTAQG PMLVELKNGDTYNG L NCD+WMN+ L++VI TS+D D+F KM E Y+RGN+IKY+ +P E+LDMV EED SK  R
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDR 89
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig820.16357.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U63.080e-59100.00snRNA-associated Sm-like protein LSm4 n=2 Tax=Ecto... [more]
U61.020e-4173.20snRNA-associated Sm-like protein LSm4 (Fragment) n... [more]
U69.500e-4176.09snRNA-associated Sm-like protein LSm4 n=1 Tax=Trib... [more]
U67.580e-4075.00snRNA-associated Sm-like protein LSm4 (Fragment) n... [more]
U64.560e-3967.71snRNA-associated Sm-like protein LSm4 n=1 Tax=Phyt... [more]
U66.180e-3975.86snRNA-associated Sm-like protein LSm4 n=1 Tax=Nann... [more]
U66.550e-3968.75snRNA-associated Sm-like protein LSm4 n=7 Tax=Pero... [more]
U68.000e-3969.39snRNA-associated Sm-like protein LSm4 (Fragment) n... [more]
U69.450e-3970.10snRNA-associated Sm-like protein LSm4 n=1 Tax=Rhiz... [more]
U61.120e-3770.45snRNA-associated Sm-like protein LSm4 n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig820contigE_fasciculatus_S2_contig820:20191..21632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.8
Seed ortholog evalue2.5e-46
Seed eggNOG ortholog2880.D7G8J7
Preferred nameLSM4
Model size489
KEGG koko:K03065,ko:K06883,ko:K12623
KEGG Pathwayko03018,ko03040,ko03050,ko05169,map03018,map03040,map03050,map05169
KEGG ModuleM00341,M00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042731,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097458,GO:0097525,GO:0097526,GO:0120025,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990234,GO:1990726,GO:1990904
Exons3
EggNOG free text desc.U6 snRNA binding
EggNOG OGsKOG3293@1,KOG3293@2759
Ec32 ortholog descriptionSm-like protein LSm4
Ec32 orthologEc-14_003260.1
Cds size489
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842481.9662404-CDS-E_fasciculatus_S2_contig820:20190..204171696842481.9662404-CDS-E_fasciculatus_S2_contig820:20190..20417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig820 20191..20417 -
1696842481.9820647-CDS-E_fasciculatus_S2_contig820:20825..209431696842481.9820647-CDS-E_fasciculatus_S2_contig820:20825..20943Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig820 20826..20943 -
1696842481.9923594-CDS-E_fasciculatus_S2_contig820:21488..216321696842481.9923594-CDS-E_fasciculatus_S2_contig820:21488..21632Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig820 21489..21632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig820.16357.1prot_E_fasciculatus_S2_contig820.16357.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig820 20191..21632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig820.16357.1

>prot_E_fasciculatus_S2_contig820.16357.1 ID=prot_E_fasciculatus_S2_contig820.16357.1|Name=mRNA_E_fasciculatus_S2_contig820.16357.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=163bp
QLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDA
DKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGRGRGR
GGRDGGRGGGRGRGDGRGRGRGRGGRDGGRGGGGRGRGEGRGGGRGRGEG
RGATGRGDGGGRG
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mRNA from alignment at E_fasciculatus_S2_contig820:20191..21632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig820.16357.1 ID=mRNA_E_fasciculatus_S2_contig820.16357.1|Name=mRNA_E_fasciculatus_S2_contig820.16357.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1442bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig820:20191..21632- (Ectocarpus fasciculatus EfasUO2)
CAGCTTCCGCTCTCGTTGCTCAAGACGGCCCAGGGCCAGCCTATGCTGGT
GGAGCTGAAGAACGGCGACACCTACAACGGGCGACTCGACAACTGCGACA
GCTGGATGAACATCAAGCTGAAGGACGTCATTTTCACCTCAAGGGTAAGT
AAGGGGGGGCGACGGATGGGCGGTGGTGCTTGCCTCAGCGTCGCGCCTGC
TGGTCTGTGTTGACGCAAGGACTTCACGGGGCGCCGAAGCGCGTACAGCA
GTGCCGCCTATCTCGAGCTCCATCCCATCTTATACTTCCTGCTTGCTGCA
AAGAAGCACGCGACGACACGTCCCCGGCGGTAGAAAGAAAGCGGATAATG
AAAAAAGGGGCGGGAAAGGCTATGCAAGGAGAGCTGTCGCATCCGAGCCC
GTGTCCCGCAGTTTTCTGTCGTCGTCTGCCCCTTGTTGCCTCTCACAAGC
GCTCTCAACGAGTCGCCAAGCTGATGAAGCTACGTGCTCATTCCCTCTCT
GGCGTCCTCTGCAGTCTCATCTTATCTCTTGCACGTTGCACAGCAGTCTC
ACCTGGTCCCCATCACTCGCCGTGGCTTCGACCCTGACCTCTCTTGCACG
TTGCACAGCAGTCTCAACTCATCCCATCACGGTGTTTTGTCTTGACCCTG
GCCCCTGACGGCGCCCCTCGCCTCTCCTCGTTGTAATAGGACGCCGACAA
GTTCGTGAAGATGGTTGAAGTGTACGTGCGCGGCAACAGCATCAAGTACG
TCACGATTCCAGAAGAGGTGTTGGACATGGTGCAAGAGGAAGACCTCAGC
AAAGAGAGTGAGTTGACTAAAAGTAGGGTGTTTCGTGTTGCGTTTTTGTT
TCTTCAGCACTTGGAAAATCGGCAGTTTCTGCGCGCGACTGCTGGCCGTT
GTTTCGCCGTAGCCGGAGCCATCGATCTGCTCCCTTTTCTTTCGGCATCG
CAAAGCAGAAGTGGCAGCAGCTTTCGGCGAGCTGGTTGTCCACAGGTAGA
GCAGTTTGACAACTTGAGATACGGGCATCCGTTCTAAAGAAGCTCGAAAC
TCAAACAGCAGCTGCATTCTGTCGCGTTCGGTCCATGTACCACTTCGGTT
GCGACGAGAGGCACACATTATCCTAGTATACCACGCGTGCTTGTTCTTTT
TCTCGCACGCCCACTCCTCCACCCCTCTGGGGGACTGACTTTTTTGCAAA
ATGACGCCGTCGCAGAGCGCGCCATGGGTGGGAGAGGTCGCGGTCGCGGG
CGAGGCGGACGGGACGGTGGTAGGGGCGGCGGCAGGGGGCGGGGCGACGG
AAGAGGTCGTGGCCGCGGGCGAGGTGGGCGGGACGGGGGCAGGGGTGGGG
GCGGGAGGGGGCGGGGCGAAGGCAGGGGTGGGGGCAGAGGGAGAGGCGAG
GGGAGAGGTGCCACCGGGCGGGGAGACGGCGGCGGGCGAGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig820:20191..21632-

>mRNA_E_fasciculatus_S2_contig820.16357.1 ID=mRNA_E_fasciculatus_S2_contig820.16357.1|Name=mRNA_E_fasciculatus_S2_contig820.16357.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=489bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig820:20191..21632- (Ectocarpus fasciculatus EfasUO2)
CAGCTTCCGCTCTCGTTGCTCAAGACGGCCCAGGGCCAGCCTATGCTGGT
GGAGCTGAAGAACGGCGACACCTACAACGGGCGACTCGACAACTGCGACA
GCTGGATGAACATCAAGCTGAAGGACGTCATTTTCACCTCAAGGGACGCC
GACAAGTTCGTGAAGATGGTTGAAGTGTACGTGCGCGGCAACAGCATCAA
GTACGTCACGATTCCAGAAGAGGTGTTGGACATGGTGCAAGAGGAAGACC
TCAGCAAAGAGAAGCGCGCCATGGGTGGGAGAGGTCGCGGTCGCGGGCGA
GGCGGACGGGACGGTGGTAGGGGCGGCGGCAGGGGGCGGGGCGACGGAAG
AGGTCGTGGCCGCGGGCGAGGTGGGCGGGACGGGGGCAGGGGTGGGGGCG
GGAGGGGGCGGGGCGAAGGCAGGGGTGGGGGCAGAGGGAGAGGCGAGGGG
AGAGGTGCCACCGGGCGGGGAGACGGCGGCGGGCGAGGT
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