mRNA_E_fasciculatus_S2_contig82.16350.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig82.16350.1
Unique NamemRNA_E_fasciculatus_S2_contig82.16350.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Chloroplast (50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 6.980e-156
Identity = 228/232 (98.28%), Postives = 229/232 (98.71%), Query Frame = 1
Query:   55 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 750
            MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSR RHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLR AGKVTKTKHRWHKVVGGMELET+GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE
Sbjct:    1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Chloroplast (50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA)

HSP 1 Score: 282 bits (721), Expect = 2.460e-89
Identity = 147/227 (64.76%), Postives = 170/227 (74.89%), Query Frame = 1
Query:   55 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 732
            M++ L   A   + A +  F  +AF GQ L A T   S   + ++MKIFDWKRRES+   L +  ++  TL P+PGSRHR  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EGATV+FE+L   G +TKT  RWHKVVG  EL   GLTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:    1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Chloroplast (50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA)

HSP 1 Score: 270 bits (690), Expect = 1.140e-84
Identity = 140/223 (62.78%), Postives = 164/223 (73.54%), Query Frame = 1
Query:   67 LATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 732
            +A      V  A+A+ A +AF GQ +   T   S     V+MKIFDWKRR+ +     +  ++  TL P+PGSRHR  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EG+TV+FE+L   G +TKT  +WHKVVG  EL    LTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:    6 VAACLALVVAVADAWVATSAFNGQAVGTHTCKASN---AVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.750e-76
Identity = 128/190 (67.37%), Postives = 144/190 (75.79%), Query Frame = 1
Query:  172 TTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
            T TG TMK+FDWKRRE+++  + D       +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIK D +NG  EG+TV+F SL  AG VTK K+  HKVV G  E    G+TVQAH FT SA  AIE  GGKC+LLSPTT  VL
Sbjct:   33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.880e-76
Identity = 128/192 (66.67%), Postives = 146/192 (76.04%), Query Frame = 1
Query:  166 SRTTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
            S +T+ +TMK+FDWKRRE+++  + D       +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIKLD LNG  EG+TVNF SL  +G +TK+K   HKVV G  E    GL VQAH FT SA  AIE  GGKC+LLSPTT  VL
Sbjct:   31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA)

HSP 1 Score: 242 bits (617), Expect = 8.620e-74
Identity = 125/205 (60.98%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  127 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 729
            F+G QL   TS  S     + MK++DWKRRE+++  + D       +D +KPAPGSR R  RKGRGI+AGQGA+CGFGMRGQK+RSG   R GFEGGQQPLYRRLPK VGRP GPGH K  +N IKL  LNG  EG+TVNF+SL      TK+K+  HK+VGG EL   GLTVQAH FTKSA EAIEA GGKC+LL  TT EV++
Sbjct:   23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLFETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Ribosomal_L18e/L15P (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA)

HSP 1 Score: 237 bits (604), Expect = 7.490e-72
Identity = 124/206 (60.19%), Postives = 155/206 (75.24%), Query Frame = 1
Query:  127 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 729
            FTG +L A +++ + T   ++MK+ DWKRR +++  + D       +D+L+PAPGSR +  RKGRGI+AGQGA+CGFGMRGQKSRSG   R GFEGGQQPLYRRLPK  GRPMGPGHTKK++NLI+LDALNG+  G+T NFESL  +  VTK+KH  HKVV G E  T+  +TVQAH FTKSA  AIE  GGKC+LL P+T EV++
Sbjct:   21 FTGTRLAAVSTSSANT---LSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Ribosomal (protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ7_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.100e-71
Identity = 117/187 (62.57%), Postives = 143/187 (76.47%), Query Frame = 1
Query:  181 GVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
            G+TMK++DWKRR++++  + D       +D L+PAPGSR    RKGRGIAAGQGA+CGFGMRGQKSRSG   R GFEGGQ PLYRRLPK  GRPMGPGH+KKQ+N+IKLD LN +D G+  NFESL TAG VTK+K+  HK+V G +  T+  +TVQAH FTK+A  AIE  GGKC+LL P+T EV+
Sbjct:   44 GMTMKLYDWKRRDADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNVDSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: 50S (ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP)

HSP 1 Score: 233 bits (595), Expect = 1.760e-70
Identity = 125/223 (56.05%), Postives = 150/223 (67.26%), Query Frame = 1
Query:   79 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 738
            A F   + +AFFA        +     A  R     +MK+FDWK+R +E       +  ++V T+ PAPGSR R  RKGRG+AAGQG SCGFGMRGQKSRSG   R GFEGGQ PLYRRLPK VGRPMGPGHTK  +NL+KLD LN   EG  V F++L  +GK+TK K +  K++GG EL    LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E
Sbjct:    2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224          
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA)

HSP 1 Score: 233 bits (593), Expect = 4.820e-70
Identity = 136/230 (59.13%), Postives = 165/230 (71.74%), Query Frame = 1
Query:   82 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTK----TKHRWH-------KVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
            L  +GAA AF +P++F GQQL    GTS     T  V+MKI+DWK R+ ++   +D V      L+PAPGS  RHKRKGRGIAAGQGASCGFGMRGQKSRSG  VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLR AGK+ K    TKH+ +       KVVGG +L T GLTVQAH FT SA +AIE  GGKC +LS TTN+ L
Sbjct:    9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGKMPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Chloroplast6.980e-15698.2850S ribosomal protein L15 n=1 Tax=Ectocarpus silic... [more]
Chloroplast2.460e-8964.7650S ribosomal protein L15 n=1 Tax=Tribonema minus ... [more]
Chloroplast1.140e-8462.7850S ribosomal protein L15 n=1 Tax=Tribonema minus ... [more]
Hypothetical2.750e-7667.37protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical3.880e-7666.67protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical8.620e-7460.98protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Ribosomal_L18e/L15P7.490e-7260.19domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]
Ribosomal3.100e-7162.57protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1... [more]
50S1.760e-7056.05ribosomal protein L15 n=1 Tax=Porphyridium purpure... [more]
Hypothetical4.820e-7059.13protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig82contigE_fasciculatus_S2_contig82:7661..12220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score451.4
Seed ortholog evalue2.5e-124
Seed eggNOG ortholog2880.D7FKW4
Preferred namePRPL15
Model size1531
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorychloroplast
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons6
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0200@1,KOG0846@2759
Ec32 ortholog description50S ribosomal protein L15, chloroplast
Ec32 orthologEc-17_001600.1
Cds size699
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig82.16350.1prot_E_fasciculatus_S2_contig82.16350.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig82 7715..11442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842480.99534-UTR-E_fasciculatus_S2_contig82:7660..77141696842480.99534-UTR-E_fasciculatus_S2_contig82:7660..7714Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig82 7661..7714 +
1696842481.0804474-UTR-E_fasciculatus_S2_contig82:11442..122201696842481.0804474-UTR-E_fasciculatus_S2_contig82:11442..12220Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig82 11443..12220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842481.010507-CDS-E_fasciculatus_S2_contig82:7714..77631696842481.010507-CDS-E_fasciculatus_S2_contig82:7714..7763Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 7715..7763 +
1696842481.02157-CDS-E_fasciculatus_S2_contig82:8074..82061696842481.02157-CDS-E_fasciculatus_S2_contig82:8074..8206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 8075..8206 +
1696842481.030461-CDS-E_fasciculatus_S2_contig82:8988..92271696842481.030461-CDS-E_fasciculatus_S2_contig82:8988..9227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 8989..9227 +
1696842481.0390227-CDS-E_fasciculatus_S2_contig82:9752..98341696842481.0390227-CDS-E_fasciculatus_S2_contig82:9752..9834Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 9753..9834 +
1696842481.0531662-CDS-E_fasciculatus_S2_contig82:11023..111031696842481.0531662-CDS-E_fasciculatus_S2_contig82:11023..11103Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 11024..11103 +
1696842481.0679777-CDS-E_fasciculatus_S2_contig82:11325..114421696842481.0679777-CDS-E_fasciculatus_S2_contig82:11325..11442Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig82 11326..11442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig82.16350.1

>prot_E_fasciculatus_S2_contig82.16350.1 ID=prot_E_fasciculatus_S2_contig82.16350.1|Name=mRNA_E_fasciculatus_S2_contig82.16350.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=233bp
MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFD
WKRRESEDGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMR
GQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDAL
NGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTK
SAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE*
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mRNA from alignment at E_fasciculatus_S2_contig82:7661..12220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig82.16350.1 ID=mRNA_E_fasciculatus_S2_contig82.16350.1|Name=mRNA_E_fasciculatus_S2_contig82.16350.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4560bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig82:7661..12220+ (Ectocarpus fasciculatus EfasUO2)
GACATACACAACACAAAGAGGCGACAGGAGAGGCCGTGCCGAGAACTCCA TATCATGAAGGCTACTCTTGCGACGACCGCGCTCTTTTGCGTGGGGGCAG CGAGTGAGTAGTGCGTGATTTTTTGTGTTACCGCTTGGAGCGTCAGCTCG CCGATTGAGTTTGACGTGCAGGACCACCCGACAGCCTTGAAGACGCATGT CGTTCTCTGCCCCACCCTCTTACCTCTCGGCTCCGCCGATCGTATCGATT GCAGTTTGGTCCATCTTGGTAAGAGATGGCCATCCAGTGCGATATTTTAG CGTGTTGTGCTTTTTGAAAGCTCGTAGCAGCTACAACGACGTGTGTGCGG CAGCGGGTGACTCACAAACACACCACATGTGTGATTTGCATGAACCCTTC CACCGGCGGAACAGATGCGTTCTTCGCTCCCACTGCCTTCACCGGTCAGC AACTGACAGCGGGGACTAGTGCACCATCGCGCACGACGACGGGTGTGACC ATGAAAATCTTCGACTGGAAAAGAAGAGAAAGCGAGGACGGCCTAGGTAA GCGCTTGCGTCTGCCTCGCGATCGTATAAAAAAGGCGTGGCAGTAACCGA CCCTCTTTGTCCAACTTTGTATTTGTATGATGTTGTACATACATGTAAAC GACCGCTGTGTGCATGCAGTTGGTTTTGCTCTGAAGTCTACAGCAGTAGA GACCGCACACTCAAGTCGTTGGTCGCGGTAGCTCAAAGTATGGCGCTTCA TCGAGCAAGGTACCATTATCGTGCTTGAACAGAAACCTAGTTTCGTATTC CTGAATGTACACAGCATCAACCTGCTCGACATCAATTTGGCCGTACTCTA CATTAGCTTGTACGGCGTGGTAGCTTTGTTAAAACGTGTCCTGCTTTGTA ATACCGGGGCTCGCAAAATGAAGGCCAACACCGGTTCCCCGGGGGTGGTT TGCACTATCAACGTTGGGGATTAACCTAGAGTCGATACGGCACCCACTGC CGGACACTTGTCGGAAATATCCGCGGCAATATTCGCGCTTGCCGCGTACA AGGTAGTGTTCAACTGCAGATTTGGATGAAGCGACACAGCAATTTGGGAC CAATTTTTTTAGTCAACCTACGCAGACAGCAGGTAGGCTTAAGCGCTCAA TCACAGCAGTACAAGTAGCTTCGGAGACAAAAAACTACGTCGTGTTTTAT TTCTGTGGATTTGTGGCTTGTGGAACATGTACATATGCATAGTCGCATCG CTGATGTTCCACGGCTACTCACTTTCTTGGACGGAATGACATCTCGTTCG TTTCCGTTGGGTTGTTTCGCGGCGCCAGTTCTTGACAGGGTCGCTGTGGA CACCCTCAAGCCTGCACCGGGCTCGCGCCACCGCCACAAGCGGAAGGGTC GCGGTATTGCTGCCGGACAGGGGGCATCATGCGGCTTCGGTATGCGAGGG CAAAAGTCTCGTTCCGGTCCTGGAGTGCGGGCAGGATTCGAGGGTGGGCA GCAGCCTCTTTACCGCCGCCTACCCAAGCTAGTTGGCCGCCCCATGGGCC CCGGCCACACCAAGAAGGTTGGTAGGGTGAACTGGCTGTTTGTGGATGAA ATCTTGCGGTAATTGAACGTGAGAGTGTGACTGCCGAGAGGTTGGGAGTG CATCACGGCAAATGCCACACTGACAACAGTTCATTGCGGCCGAGGTGCCG ATACGATGGTCTTAAGGTTGTGTTTCTGTCAGGTTGGGAGTGTGCATGGC AACGGCATTCCGCCCAAGCCCGTCACACGAAAGTGTAGAAGACCACGTTA TTGTGTCATGTAGCTCCTTAGGAATCCGGAAAAAGTCGTCAACAGTTTTC GTGGATGGTACGGAGGTCAAGCCCCAATTGACCAACAAAAATCGGGGGTG ATTGTGCTTGATCAAATGGGCTCCACCTGAAACTCCGAGACCGCCATCTG TCTTGGACCCACATGCTCCTGTTCGCAAGTACTGTAGATATGACGGCAAC TGCCCTGTCTGTGGGCCTGCTTGTAGTGGACCCTCTCGTTGTCACCCACT GAGCAATCCCCCCCTTCCCCCCCACGTCCTCCCCTGCAATAGCAATTCAA CCTCATTAAGCTGGACGCCCTCAATGGACTGGATGAAGGTGCCACCGTTA ACTTCGAATCTCTTCGTACGGCCGGTGAGTCATGTTGCAATTACTGCGCC CTCGGTGTACCTCTCAACCGTGTTGCAAGTGCGGTGCCAAGTCTTGGTCG AATTTTACGAAACTGAGTATCTGCTTAGGCCTGCGGGATGCCTTCGGCGG CGGCGGCGGGGGGGGGGGGGCACGGCGTATGCAACAGCGCCATTTGAGGG CCCTGTACGCTTTGACAAGTTGCTTACAAAATGATACGGACTATCCAAAT CTGCTCAGAGTCACCTGACGCAGTTTTTGAGTGTCGTGCTTCACAATTAC AGCACCCCCCGACGTTAGTCTCCTCTTTCTCCGCTGATATTGCTGTGATC TGATGCAGGGTTGGTTCAAAAACGCCTCACCAGGTTTGAGTCCAATACGT GGAGGGCGGACAGAGTAGAGAGCTTCCGAGTACATGTGCTCAGATCAAAA CATTGTTCCTACTCTTCTTAGAACACCGTATTTCCAGTGCTAAAACCTAC TCTACATCCCAACGCAGACATCGGGTGCCATCTGTGGTCCGTGTGCTTGC CTTGTATGAGCGGAAGTCGCGACTCTTTGCTCTTGTTTCTGTTTCTCTTT ACTCAAAACACACACATGCTTTACTTTTGGCAACAGAATCAGGGATGCAG TTGAGATGCAGACTGGAGGGTCCCACGCACATTTATGCTCACCGAAATGA AAATGTGCTTCACCGCAATCCTAACCCTAGCTCCCGGGCCGGTTAAGCCC CGTGACTGCCAGGGTCTGAAGAGATTGAGATTGTGGATACAGTTACCAGT AAAAGTATGCCGATAGAGAGAGCAAAAAGAGATCCGGCATCCAACGCGCA ACCATGACGTCAGGTGATGAAGGCCATTAAATCCCGCACTGATGAAACTG CTCCAACGTGTCGTGTGACTGTTCGGTCTTCCTCTCGCTCAGTTATTACC TATCTTTTCCCTCAGTTGCTGCGCCTGCCATAGTTGTATCACCTTGCGTC GTGAAGATCAATCATTGTCTTCCTCTTGGGTACAACAGCAGTCGAGGCGT CCACCCTGAACCAACCAACTATCCACAACAGTGCAGATATTGGTGATGTG GAAAGGACGGTTTAGGGTGGGCACGTCCCCGACACGACCAATAAACGGAC AGCCGTAGGCGGAATGATGTGCTCACGGCATGCGCTGTACTCTGCCCGAA AATACAATGTCAGGTAAAGTCACCAAGACCAAGCACAGGTGGCACAAGGT TGTGGGTGGAATGGAGCTGGAAACATCAGGGCTTACAGTACAGGTGCGAG GAACACTTTGGGTACGTTGGTGCCAGTAATTTTGTTCTCCAGGTATTTGC TCCCGTAACATTCAAGGCAGCATGTACGTTCAAGATGAATCGGAGTTGCG AAAGGCGAACGCGGGCTCCAGTGTTGCGATAGTTCCTTGACGTATCGCGC GGGGGGAGTTGACCATGCCACCGGAACACGTTTTTGTCCGTCTCTCCTTC TATTCCGTGCCGCAGGCCCACGGGTTCACGAAGAGCGCCGTTGAGGCGAT AGAGGCGAAGGGCGGGAAGTGCCAACTGCTTTCCCCGACGACGAATGAAG TTTTGTCGATGGACGAGGAGGAGGAAGAGTAAAGTATGCAGGGCCGTACG AGCGCCCTTGCAAGACGGAACGTGGCAATCACGGATCAGCGCTCGATGTT GTTTTCGGCTGTGTGAAATATCGCCGGCCATTGTATGCGATTTAGTCTAG AACTTGTTTTTGGGCGGTAGTTTACCGGAAGCTTGGAACAATTGTGAGTC ATCATGTGGGGAAGTCCTCCAGCCTTCAAGCATGAAACGGATTAACAGCT GCTGCCGTCAGCGCCAACACTCCGTGAGAGAATGCGGAATGGCATGGCGG AGCGAAAGCCCAAGGCTTGTAAGTGCCCGGGGGGTTCGACGAACATCCAC GGACAGACCCCGGCAGTTCAAAATGCGAATTGAATCGAAGAGTGCGCCAT TTCAATCGAGCCGGAGAAAACTCTAAGGAAAAGACATATTGCGCCCAGTT GAGCTAGCTCTCAAGGGCAGAAAAGTCTCAAGTTTAACTTTTTTTGTTCA CAGAAGCACACGCATGAGACCTCGAAGTTCCCAAACTGGAACGGGATTTG CGCGTTCGTGCCGTGTATCCTGTACACGTGGTGAACGAGCCACGTTTGCG TTTTTTATTCGTTTGAAGAACGCCGTCTCGCGCTTGCTATTTCTTTTTCT GCGAAGACGGGAAGAACGAAGGCGGCCTTGTGAACCTCCGGGCTGTAGTA TCTCAGCACTTCCGTCATTGCAGCATTGGGAGTAGCTGTCGGCGTCGATA AATCTGCGAGAGACAATCAAAGATTGGTCCGTATTGTTACATGTGTGTGG TCTACCGCGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig82:7661..12220+

>mRNA_E_fasciculatus_S2_contig82.16350.1 ID=mRNA_E_fasciculatus_S2_contig82.16350.1|Name=mRNA_E_fasciculatus_S2_contig82.16350.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=699bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig82:7661..12220+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGCTACTCTTGCGACGACCGCGCTCTTTTGCGTGGGGGCAGCGAA
TGCGTTCTTCGCTCCCACTGCCTTCACCGGTCAGCAACTGACAGCGGGGA
CTAGTGCACCATCGCGCACGACGACGGGTGTGACCATGAAAATCTTCGAC
TGGAAAAGAAGAGAAAGCGAGGACGGCCTAGTTCTTGACAGGGTCGCTGT
GGACACCCTCAAGCCTGCACCGGGCTCGCGCCACCGCCACAAGCGGAAGG
GTCGCGGTATTGCTGCCGGACAGGGGGCATCATGCGGCTTCGGTATGCGA
GGGCAAAAGTCTCGTTCCGGTCCTGGAGTGCGGGCAGGATTCGAGGGTGG
GCAGCAGCCTCTTTACCGCCGCCTACCCAAGCTAGTTGGCCGCCCCATGG
GCCCCGGCCACACCAAGAAGCAATTCAACCTCATTAAGCTGGACGCCCTC
AATGGACTGGATGAAGGTGCCACCGTTAACTTCGAATCTCTTCGTACGGC
CGGTAAAGTCACCAAGACCAAGCACAGGTGGCACAAGGTTGTGGGTGGAA
TGGAGCTGGAAACATCAGGGCTTACAGTACAGGCCCACGGGTTCACGAAG
AGCGCCGTTGAGGCGATAGAGGCGAAGGGCGGGAAGTGCCAACTGCTTTC
CCCGACGACGAATGAAGTTTTGTCGATGGACGAGGAGGAGGAAGAGTAA
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