mRNA_E_fasciculatus_S2_contig82.16350.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Chloroplast (50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI) HSP 1 Score: 452 bits (1162), Expect = 6.980e-156 Identity = 228/232 (98.28%), Postives = 229/232 (98.71%), Query Frame = 1
Query: 55 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 750
MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSR RHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLR AGKVTKTKHRWHKVVGGMELET+GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE
Sbjct: 1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Chloroplast (50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA) HSP 1 Score: 282 bits (721), Expect = 2.460e-89 Identity = 147/227 (64.76%), Postives = 170/227 (74.89%), Query Frame = 1
Query: 55 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 732
M++ L A + A + F +AF GQ L A T S + ++MKIFDWKRRES+ L + ++ TL P+PGSRHR RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EGATV+FE+L G +TKT RWHKVVG EL GLTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Chloroplast (50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA) HSP 1 Score: 270 bits (690), Expect = 1.140e-84 Identity = 140/223 (62.78%), Postives = 164/223 (73.54%), Query Frame = 1
Query: 67 LATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 732
+A V A+A+ A +AF GQ + T S V+MKIFDWKRR+ + + ++ TL P+PGSRHR RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EG+TV+FE+L G +TKT +WHKVVG EL LTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 6 VAACLALVVAVADAWVATSAFNGQAVGTHTCKASN---AVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA) HSP 1 Score: 248 bits (634), Expect = 2.750e-76 Identity = 128/190 (67.37%), Postives = 144/190 (75.79%), Query Frame = 1
Query: 172 TTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
T TG TMK+FDWKRRE+++ + D +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIK D +NG EG+TV+F SL AG VTK K+ HKVV G E G+TVQAH FT SA AIE GGKC+LLSPTT VL
Sbjct: 33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA) HSP 1 Score: 248 bits (633), Expect = 3.880e-76 Identity = 128/192 (66.67%), Postives = 146/192 (76.04%), Query Frame = 1
Query: 166 SRTTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
S +T+ +TMK+FDWKRRE+++ + D +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIKLD LNG EG+TVNF SL +G +TK+K HKVV G E GL VQAH FT SA AIE GGKC+LLSPTT VL
Sbjct: 31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA) HSP 1 Score: 242 bits (617), Expect = 8.620e-74 Identity = 125/205 (60.98%), Postives = 147/205 (71.71%), Query Frame = 1
Query: 127 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 729
F+G QL TS S + MK++DWKRRE+++ + D +D +KPAPGSR R RKGRGI+AGQGA+CGFGMRGQK+RSG R GFEGGQQPLYRRLPK VGRP GPGH K +N IKL LNG EG+TVNF+SL TK+K+ HK+VGG EL GLTVQAH FTKSA EAIEA GGKC+LL TT EV++
Sbjct: 23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLFETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Ribosomal_L18e/L15P (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA) HSP 1 Score: 237 bits (604), Expect = 7.490e-72 Identity = 124/206 (60.19%), Postives = 155/206 (75.24%), Query Frame = 1
Query: 127 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 729
FTG +L A +++ + T ++MK+ DWKRR +++ + D +D+L+PAPGSR + RKGRGI+AGQGA+CGFGMRGQKSRSG R GFEGGQQPLYRRLPK GRPMGPGHTKK++NLI+LDALNG+ G+T NFESL + VTK+KH HKVV G E T+ +TVQAH FTKSA AIE GGKC+LL P+T EV++
Sbjct: 21 FTGTRLAAVSTSSANT---LSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Ribosomal (protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ7_9STRA) HSP 1 Score: 236 bits (601), Expect = 3.100e-71 Identity = 117/187 (62.57%), Postives = 143/187 (76.47%), Query Frame = 1
Query: 181 GVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
G+TMK++DWKRR++++ + D +D L+PAPGSR RKGRGIAAGQGA+CGFGMRGQKSRSG R GFEGGQ PLYRRLPK GRPMGPGH+KKQ+N+IKLD LN +D G+ NFESL TAG VTK+K+ HK+V G + T+ +TVQAH FTK+A AIE GGKC+LL P+T EV+
Sbjct: 44 GMTMKLYDWKRRDADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNVDSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: 50S (ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP) HSP 1 Score: 233 bits (595), Expect = 1.760e-70 Identity = 125/223 (56.05%), Postives = 150/223 (67.26%), Query Frame = 1
Query: 79 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 738
A F + +AFFA + A R +MK+FDWK+R +E + ++V T+ PAPGSR R RKGRG+AAGQG SCGFGMRGQKSRSG R GFEGGQ PLYRRLPK VGRPMGPGHTK +NL+KLD LN EG V F++L +GK+TK K + K++GG EL LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E
Sbjct: 2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA) HSP 1 Score: 233 bits (593), Expect = 4.820e-70 Identity = 136/230 (59.13%), Postives = 165/230 (71.74%), Query Frame = 1
Query: 82 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTK----TKHRWH-------KVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 726
L +GAA AF +P++F GQQL GTS T V+MKI+DWK R+ ++ +D V L+PAPGS RHKRKGRGIAAGQGASCGFGMRGQKSRSG VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLR AGK+ K TKH+ + KVVGG +L T GLTVQAH FT SA +AIE GGKC +LS TTN+ L
Sbjct: 9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGKMPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig82.16350.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig82.16350.1 >prot_E_fasciculatus_S2_contig82.16350.1 ID=prot_E_fasciculatus_S2_contig82.16350.1|Name=mRNA_E_fasciculatus_S2_contig82.16350.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=233bp MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDback to top mRNA from alignment at E_fasciculatus_S2_contig82:7661..12220+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig82.16350.1 ID=mRNA_E_fasciculatus_S2_contig82.16350.1|Name=mRNA_E_fasciculatus_S2_contig82.16350.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4560bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig82:7661..12220+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig82:7661..12220+ >mRNA_E_fasciculatus_S2_contig82.16350.1 ID=mRNA_E_fasciculatus_S2_contig82.16350.1|Name=mRNA_E_fasciculatus_S2_contig82.16350.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=699bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig82:7661..12220+ (Ectocarpus fasciculatus EfasUO2)back to top |