mRNA_E_fasciculatus_S2_contig8190.16342.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 215 bits (547), Expect = 2.100e-64 Identity = 108/147 (73.47%), Postives = 123/147 (83.67%), Query Frame = 1
Query: 1 WGAAVTTSDTTKLAELVLVWSVSKPEHALSVLRKCVSLMEKEVAFSAP-ASPLPLPATTPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
WG AV T D TKLAELVLVWS S+PE ALS+LR+CV L+E+E AFS P +SPL P+ T GP+R+SCLK ++VALNETCDGK WYTSTKELQLASLELC+ACR Y+ LHL +DA PRRLLAAADAP PH KRLCGTRVPRL+ARR
Sbjct: 70 WGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRA 216
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 199 bits (506), Expect = 4.920e-60 Identity = 98/137 (71.53%), Postives = 118/137 (86.13%), Query Frame = 1
Query: 31 TKLAELVLVWSVSKPEHALSVLRKCVSLMEKEVAFSAPASP-LPLPATTPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
T+LA+LVLVWS S+PE ALS+L+ CVSL+EKE AFSAPA P +PL T PGPSR+SCL A+ +ALNETC+G+ WYTSTKELQLASLE C+ACR+Y+ LHL +DA++PRRLLA ADAPPPH + LC TRVPRL+ARRV
Sbjct: 57 TRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRV 193
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 172 bits (437), Expect = 1.130e-50 Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 1
Query: 4 GAAVTTSDTTKLAELVLVWSVSKPEHALSVLRKCVSLMEKEVAFSAP-ASPLPLPATTPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPP 384
G+AV + TKLAELVLVWSVSKPE ALS+ R CVSL+EKE A SA +SPL +T PGP R+SCL AI VAL+ETCDGK WYTSTKELQLASL C ACR+++ +HL +D +PRRLLAAADAPPP
Sbjct: 71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPP 198
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 139 bits (349), Expect = 3.970e-37 Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 1
Query: 178 GPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
GP+R+SCL AI VALNET DGK WYTSTKE QLASLE CIACR+++ L L +D+ PRRLLAAADAPPPH KRLCGTRVPRL+ARRV
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRV 92
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 139 bits (351), Expect = 8.250e-37 Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1
Query: 178 GPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
GP+R CL+A+ VALNETCDGK WYTSTKELQLASL+ CIACR+ + +HLN+D ++PRRLLA+ADAPPPH KRLC TRVPRL++RRV
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRV 131
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.970e-35 Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1
Query: 178 GPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
G + N CL ++ VALNETCDG WYTSTKELQ ASLE CIACR+Y ++HL +D ++PR LLAAADAPPPH KRLC TRVPRL+AR V
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSV 94
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.670e-30 Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 1
Query: 172 TPGPSRNSCLKAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
+PGP+ N+CL AI VAL ET DGK WYTSTKELQLASLE C+ACR+Y+ LHL +D +PR LLAAAD PP H KRL RVPRL+AR V
Sbjct: 28 SPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHV 116
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.190e-30 Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1
Query: 202 KAISVALNETCDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
K + +ALNE CDGKRWYTSTKELQLASLE C+ACR Y++L L +DA+ PR LLAA DAPPPH KR C TRVPRL+ARRV
Sbjct: 19 KDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRV 97
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.570e-25 Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 232 CDGKRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
CDGKRWYTSTKELQ ASLE CIACR Y+ L L +D + PR LLAA DAP PH KR C TRVPRL+ARRV
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRV 70
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 7.610e-15 Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 181 PSRNSCLKAISVALNETC-DG--KRWYTSTKELQLASLELCIACRSYRMLHLNIDAEVPRRLLAAADAPPPHRKRLCGTRVPRLKARRV 438
P+ + L + V LN+ C DG K W+ STKELQLASL+LC ACR LHL ++ P RLLA AD+P + GTRVPRL+AR V
Sbjct: 24 PTNSRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE--GTRVPRLRAREV 110 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8190.16342.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8190.16342.1 >prot_E_fasciculatus_S2_contig8190.16342.1 ID=prot_E_fasciculatus_S2_contig8190.16342.1|Name=mRNA_E_fasciculatus_S2_contig8190.16342.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=146bp WGAAVTTSDTTKLAELVLVWSVSKPEHALSVLRKCVSLMEKEVAFSAPASback to top mRNA from alignment at E_fasciculatus_S2_contig8190:1403..6501- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8190.16342.1 ID=mRNA_E_fasciculatus_S2_contig8190.16342.1|Name=mRNA_E_fasciculatus_S2_contig8190.16342.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5099bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8190:1403..6501- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8190:1403..6501- >mRNA_E_fasciculatus_S2_contig8190.16342.1 ID=mRNA_E_fasciculatus_S2_contig8190.16342.1|Name=mRNA_E_fasciculatus_S2_contig8190.16342.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8190:1403..6501- (Ectocarpus fasciculatus EfasUO2)back to top |