mRNA_E_fasciculatus_S2_contig818.16330.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig818.16330.1
Unique NamemRNA_E_fasciculatus_S2_contig818.16330.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Nonribosomal (peptide synthetase 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP2_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.150e-78
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 DRLPSWQASLCMDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            DRLPSWQA+LCMDDDGEWIKTA+EAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPY+EGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP
Sbjct:  231 DRLPSWQATLCMDDDGEWIKTAREAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 351          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN6_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.010e-71
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1
Query:   34 MDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            MDDDGEWIKTA+EAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPY+EGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP
Sbjct:    1 MDDDGEWIKTAREAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYSEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 110          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Carrier (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXF7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.880e-42
Identity = 78/120 (65.00%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP+WQ +L ++ D      A+  PP+P D     PDDLAYVVMSSGTTG PKGICCPHRGAVHSY  RLVN PY   DR A HVFFVWELLRPLLG         VPLYVIPDD IYDP
Sbjct:  394 RLPAWQEALELNADWREALAARSVPPMPADRERTRPDDLAYVVMSSGTTGVPKGICCPHRGAVHSYDWRLVNCPYAPDDRVASHVFFVWELLRPLLGN--------VPLYVIPDDTIYDP 505          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAS9_HYAAE)

HSP 1 Score: 152 bits (385), Expect = 7.080e-41
Identity = 74/120 (61.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP+WQ +L MD++   I   +  P +P D A+  P DLAYVVMSSGTTG PKGICCPHRGAVHSYH RL + P+ E DR ACHVFFVWELLRP+LG          PLY+IPD+ IYDP
Sbjct:  382 RLPAWQHALEMDENWLDILARQNIPAMPADRAVTHPGDLAYVVMSSGTTGVPKGICCPHRGAVHSYHWRLTHCPFKEDDRVACHVFFVWELLRPMLGNR--------PLYIIPDNIIYDP 493          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Carrier (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR86_GLOUD)

HSP 1 Score: 152 bits (384), Expect = 2.090e-40
Identity = 75/120 (62.50%), Postives = 82/120 (68.33%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP WQ +L +D D      A+  PP+P D     PDDLAYVVMSSGTTG PKGICCPHRGAVHSY  RLVN P+   DR A HVFFVWELLRP+LG          PLY+IPDD IYDP
Sbjct:  402 RLPEWQETLNLDSDWLDALRARNVPPMPVDRVRTQPDDLAYVVMSSGTTGVPKGICCPHRGAVHSYDWRLVNCPFIAHDRVASHVFFVWELLRPMLGNK--------PLYIIPDDTIYDP 513          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Carrier (domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4S739_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.340e-39
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIK--TAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP+WQ +L +DD   W++  + +  P +P D     PDDLAYVVMSSGTTG PKGICCPHRGAVHSY+ RL + PY E DR ACHVFFVWELLRP+LG          PLY+IPD  IYDP
Sbjct:  394 RLPAWQQALELDDG--WLENLSKRNIPVMPADRTRTHPDDLAYVVMSSGTTGVPKGICCPHRGAVHSYNWRLTHCPYKEDDRMACHVFFVWELLRPMLGNR--------PLYIIPDSTIYDP 505          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Carrier (domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD90_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.340e-39
Identity = 74/120 (61.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP+WQ  L +DD        K  P +P       PDDLAYVVMSSGTTG PKGICCPHRGAVHSYH RL + PY E DR ACHVFFVWELLRP+LG          PLY+IPD+ IYDP
Sbjct:  397 RLPAWQQVLELDDGWLDALAQKSIPAMPAGRTRTHPDDLAYVVMSSGTTGIPKGICCPHRGAVHSYHWRLTHCPYKEDDRVACHVFFVWELLRPMLGNR--------PLYIIPDNAIYDP 508          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Uncharacterized (protein n=6 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EZV8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.370e-39
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIK--TAKEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP+WQ +L +DD   W++  + +  P +P D     PDDLAYVVMSSGTTG PKGICCPHRGAVHSY+ RL + PY E DR ACHVFFVWELLRP+LG          PLY+IPD  IYDP
Sbjct:  394 RLPAWQQALELDDG--WLENLSKRNIPVMPADRTRTHPDDLAYVVMSSGTTGVPKGICCPHRGAVHSYNWRLTHCPYKEDDRMACHVFFVWELLRPMLGNR--------PLYIIPDSTIYDP 505          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Carrier (domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7P1_PHYRM)

HSP 1 Score: 149 bits (376), Expect = 2.480e-39
Identity = 75/122 (61.48%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIKTA--KEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP+WQ +L +DD   W+++   +  P +P D     PDDLAYVVMSSGTTG PKGICCPHRGAVHSY  RL + PY E DR ACHVFFVWELLRP+LG          PLYVIPD  IYDP
Sbjct:  389 RLPAWQQALELDDG--WLESLAQRNIPVMPADRTRTHPDDLAYVVMSSGTTGVPKGICCPHRGAVHSYDWRLKHCPYKEDDRVACHVFFVWELLRPMLGNR--------PLYVIPDSSIYDP 500          
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Match: Carrier (domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=G5AF40_PHYSP)

HSP 1 Score: 149 bits (376), Expect = 2.500e-39
Identity = 75/122 (61.48%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    4 RLPSWQASLCMDDDGEWIKTA--KEAPPVPQDAALPSPDDLAYVVMSSGTTGAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGMESAGGVAVPLYVIPDDHIYDP 363
            RLP WQ +L +DD   W+++   +  P +P D     PDDLAYVVMSSGTTG PKGICCPHRGAVHSY  RL + PY E DR ACHVFFVWELLRP+LG          PLYVIPD+ IYDP
Sbjct:  392 RLPGWQQALELDDG--WLESLARQNIPSMPLDRTRTHPDDLAYVVMSSGTTGVPKGICCPHRGAVHSYDWRLTHCPYKEDDRVACHVFFVWELLRPMLGNR--------PLYVIPDNTIYDP 503          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig818.16330.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Nonribosomal3.150e-7897.52peptide synthetase 10 n=1 Tax=Ectocarpus siliculos... [more]
Uncharacterized2.010e-7198.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Carrier6.880e-4265.00domain-containing protein n=1 Tax=Pythium brassicu... [more]
Uncharacterized7.080e-4161.67protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Carrier2.090e-4062.50domain-containing protein n=1 Tax=Globisporangium ... [more]
Carrier1.340e-3960.66domain-containing protein n=1 Tax=Phytophthora ker... [more]
Carrier1.340e-3961.67domain-containing protein n=2 Tax=Peronospora effu... [more]
Uncharacterized1.370e-3960.66protein n=6 Tax=Phytophthora kernoviae TaxID=32545... [more]
Carrier2.480e-3961.48domain-containing protein n=1 Tax=Phytophthora ram... [more]
Carrier2.500e-3961.48domain-containing protein n=6 Tax=Phytophthora Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig818contigE_fasciculatus_S2_contig818:236..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score263.5
Seed ortholog evalue5e-68
Seed eggNOG ortholog2880.D8LQP2
Model size363
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG1020@1,KOG1178@2759
Cds size363
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842479.433125-CDS-E_fasciculatus_S2_contig818:235..4611696842479.433125-CDS-E_fasciculatus_S2_contig818:235..461Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig818 236..461 -
1696842479.4506512-CDS-E_fasciculatus_S2_contig818:978..11151696842479.4506512-CDS-E_fasciculatus_S2_contig818:978..1115Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig818 979..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig818.16330.1prot_E_fasciculatus_S2_contig818.16330.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig818 236..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig818.16330.1

>prot_E_fasciculatus_S2_contig818.16330.1 ID=prot_E_fasciculatus_S2_contig818.16330.1|Name=mRNA_E_fasciculatus_S2_contig818.16330.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
DRLPSWQASLCMDDDGEWIKTAKEAPPVPQDAALPSPDDLAYVVMSSGTT
GAPKGICCPHRGAVHSYHHRLVNFPYTEGDREACHVFFVWELLRPLLGGM
ESAGGVAVPLYVIPDDHIYDP
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mRNA from alignment at E_fasciculatus_S2_contig818:236..1115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig818.16330.1 ID=mRNA_E_fasciculatus_S2_contig818.16330.1|Name=mRNA_E_fasciculatus_S2_contig818.16330.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=880bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig818:236..1115- (Ectocarpus fasciculatus EfasUO2)
GATCGCCTGCCCTCTTGGCAAGCCTCCCTGTGCATGGACGACGACGGGGA GTGGATCAAGACTGCCAAGGAAGCTCCCCCCGTACCGCAGGACGCCGCCT TGCCTTCGCCGGACGACCTCGCCTACGTGGTCATGAGGTGTATATCTACT GCTGGACTGCTGTGCTCTGCTGTACTGGTCTGAAGTACTCACATATCCTG CTTCAATATATTATATTCCGCATGCATTATCATGATCGTGAGCACACGCG TTCGTTCCCTCCCCAAGTGAAAATCGGAAACACCCTCTTTGTCTAGCCTA CTCCTGCCAACAATCGCATTGTACGCCATTAGTCAACGTTTGTCAGAGGA CTCAGAGGCCAGAAATGGAACAACGGCTTATTTAGAGTGTCCGCTTCGCC TGTGACCACCAAAGACCGACCACGTCAGTTGGAACAAAATAACACTACAA GGCAGACATCGAAACGGTTTTTTGTTGTCTGTGAAGTCAGCAGCGACAGC ATCAACACGAGCATGCACTCGGGCCTAAGCCTGTCCATGAACAACAGGTG CCACCTACAGTACACGTCTCCAGTACCCCTACGGCAGCAGTACCGATACC GACCTTGACTTATCTTCTTGGTCCCTCTCCTCCCCTTGTTGAAATATCTC GCAGCTCTGGAACCACCGGCGCGCCCAAGGGCATCTGCTGCCCCCACCGC GGCGCCGTCCACTCGTACCACCATCGCCTCGTCAACTTCCCCTACACTGA GGGCGACAGGGAGGCTTGCCACGTCTTCTTCGTCTGGGAGCTGCTGAGGC CGCTCTTGGGCGGCATGGAGAGCGCCGGCGGTGTGGCGGTTCCGCTGTAT GTGATACCGGACGACCACATCTACGACCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig818:236..1115-

>mRNA_E_fasciculatus_S2_contig818.16330.1 ID=mRNA_E_fasciculatus_S2_contig818.16330.1|Name=mRNA_E_fasciculatus_S2_contig818.16330.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig818:236..1115- (Ectocarpus fasciculatus EfasUO2)
GATCGCCTGCCCTCTTGGCAAGCCTCCCTGTGCATGGACGACGACGGGGA
GTGGATCAAGACTGCCAAGGAAGCTCCCCCCGTACCGCAGGACGCCGCCT
TGCCTTCGCCGGACGACCTCGCCTACGTGGTCATGAGCTCTGGAACCACC
GGCGCGCCCAAGGGCATCTGCTGCCCCCACCGCGGCGCCGTCCACTCGTA
CCACCATCGCCTCGTCAACTTCCCCTACACTGAGGGCGACAGGGAGGCTT
GCCACGTCTTCTTCGTCTGGGAGCTGCTGAGGCCGCTCTTGGGCGGCATG
GAGAGCGCCGGCGGTGTGGCGGTTCCGCTGTATGTGATACCGGACGACCA
CATCTACGACCCA
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