mRNA_E_fasciculatus_S2_contig8174.16328.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8174.16328.1
Unique NamemRNA_E_fasciculatus_S2_contig8174.16328.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8174.16328.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ2_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 9.190e-90
Identity = 156/169 (92.31%), Postives = 160/169 (94.67%), Query Frame = 1 
Query:    1 LGRSGSSSDGFGLWPKRRRKVGGGAGDAAVEFLDVREAALVSVAESLARRALPWQAQLCPRALQDLEIARVKIFHASEKKRQAVNKARQDEIFRGQLLGEERSWELFGRAQGRLFEGSLDKIADYVKVRESDHAAYVSAQAQMRTARVQSVEGLGRHSIDVLEQGEADS 507
            L RSGSSSDGFGLWPKRRRKVGGGAGDAAVEFLDVREAALV VAESLARRALPWQAQLCPRALQDLEIARVKIFHASEKKRQ ++KARQDEIFRGQLLGEERSWELFG AQG LFE  LDKIADYVKVRES+HAAYV+AQA MRTARVQ VEGLGRHSIDVLEQGEADS
Sbjct:  393 LRRSGSSSDGFGLWPKRRRKVGGGAGDAAVEFLDVREAALVGVAESLARRALPWQAQLCPRALQDLEIARVKIFHASEKKRQTMHKARQDEIFRGQLLGEERSWELFGSAQGSLFESFLDKIADYVKVRESNHAAYVAAQALMRTARVQRVEGLGRHSIDVLEQGEADS 561
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BLAST of mRNA_E_fasciculatus_S2_contig8174.16328.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV9_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 3.350e-71
Identity = 137/183 (74.86%), Postives = 150/183 (81.97%), Query Frame = 1 
Query:    1 LGRSGSSSDGFGLWPKRRRKVGGGAGDAAVEFLDVREAALVSVAESLARRALPWQAQLCPRALQDLEIARVKIFHASEKKRQAVNKARQDEIFRGQLLGEERSWELFGRAQGRLFEGSLDKI-----------ADYVKVR-ESDHAAYVSAQAQMRTARVQSV--EGLGRHSIDVLEQGEADS 507
            LGRSGSSSD FGLWPKRRRKVGGGAGDAAVEFLD+REAALVSVAESLARRALPWQAQLCPRALQDLEIARVKIFHASEK+RQAV+KARQDEIFRGQLLGEERSWELFGRAQGRLFEGSLDK              + ++R + D ++ ++  A   T R      +GL R+SIDVLEQGEADS
Sbjct:  377 LGRSGSSSDSFGLWPKRRRKVGGGAGDAAVEFLDIREAALVSVAESLARRALPWQAQLCPRALQDLEIARVKIFHASEKERQAVHKARQDEIFRGQLLGEERSWELFGRAQGRLFEGSLDKALMRTARVQRVEGAWKELRLDDDLSSEIAGYASSHTLRPLRFINKGLDRYSIDVLEQGEADS 559
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8174.16328.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.190e-9092.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.350e-7174.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8174contigE_fasciculatus_S2_contig8174:2020..4687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size508
Hectar predicted targeting categoryother localisation
Exons5
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842479.1698856-CDS-E_fasciculatus_S2_contig8174:2019..20791696842479.1698856-CDS-E_fasciculatus_S2_contig8174:2019..2079Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8174 2020..2079 +
1696842479.1809745-CDS-E_fasciculatus_S2_contig8174:2930..30861696842479.1809745-CDS-E_fasciculatus_S2_contig8174:2930..3086Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8174 2931..3086 +
1696842479.191461-CDS-E_fasciculatus_S2_contig8174:3526..36731696842479.191461-CDS-E_fasciculatus_S2_contig8174:3526..3673Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8174 3527..3673 +
1696842479.2029104-CDS-E_fasciculatus_S2_contig8174:4004..40971696842479.2029104-CDS-E_fasciculatus_S2_contig8174:4004..4097Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8174 4005..4097 +
1696842479.2133675-CDS-E_fasciculatus_S2_contig8174:4636..46871696842479.2133675-CDS-E_fasciculatus_S2_contig8174:4636..4687Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8174 4637..4687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8174.16328.1prot_E_fasciculatus_S2_contig8174.16328.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8174 2020..4687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8174.16328.1

>prot_E_fasciculatus_S2_contig8174.16328.1 ID=prot_E_fasciculatus_S2_contig8174.16328.1|Name=mRNA_E_fasciculatus_S2_contig8174.16328.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=169bp
LGRSGSSSDGFGLWPKRRRKVGGGAGDAAVEFLDVREAALVSVAESLARR
ALPWQAQLCPRALQDLEIARVKIFHASEKKRQAVNKARQDEIFRGQLLGE
ERSWELFGRAQGRLFEGSLDKIADYVKVRESDHAAYVSAQAQMRTARVQS
VEGLGRHSIDVLEQGEADS
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mRNA from alignment at E_fasciculatus_S2_contig8174:2020..4687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8174.16328.1 ID=mRNA_E_fasciculatus_S2_contig8174.16328.1|Name=mRNA_E_fasciculatus_S2_contig8174.16328.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2668bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8174:2020..4687+ (Ectocarpus fasciculatus EfasUO2)
TTGGGGCGGTCCGGATCTTCTTCAGACGGTTTCGGATTGTGGCCGAAACG
ACGACGAAAGGTAACACATGAAAGGAACATCATGACAGATGAATAGGAGT
ATCATGCTAGAGTATAGGAGTGTGTTCCGGACTTCGACTGTGGCTTCTGA
TATGTACAAGGCGTTGGTTCGGGACGGTTGGTGTGCTTATTTCGATGGTT
TCGGCTGGAGGCGAAAGAAACGACGGAAGGTAACAAGTCAAGCAAATATT
CACATAGTGCTAGAATATATCGGAGCGTAGCATGTTCCGGACCTAGTTAT
ATTTGCTCCTGATGTGCACGCTACTATCTTGATCGGTTTGCAATGAAAGC
AATGACCTTGCCATGCGAAGATCATGCACAGAAAGTAGATATGCACATCA
GCAGCACACAATGAGTGTGACAGACGTTGAGGGACGTAGCGTGTGGTCGG
AACGGAAAGCTGACGCCGGTGCATTCGAATGGCGATGGCGCCCGTATGCT
AGTTTACCTCAAGGGTGCTCACCTCGAATTCTTCCGGTGGAGAGGGCAAT
GAGGGGTGAAAGGAGCCGAGAAGTGCAGGGGATAGAACAGCCTCGTCCCA
GATGACGTTGCCTGAACGTTCATGCAGCGGTGAGGATGTAAGCCACACTC
CCTTCGAATCGCTGATCATCAATGTCCGCGCTTGCTGTCTACCCAGTATC
CTGACCGGTTAAGTGGTCCATGCACCATGTCTTGACGTCACGTACGCCTT
CGAGGATCTGCGATACAACAACCACGGCCATGTATGATCCAAAGGAGACC
CTGACCTCGTCCCGCAATCAGACTCCACTGTCATTTTCTCGTCACAAGCC
CCGCTTCCGAAATAACAATACATAATATCCCGCCTCCGATGACGCTTGAA
ACCCCCCTCAGGTTGGAGGCGGGGCAGGAGATGCCGCTGTGGAGTTCTTG
GATGTTAGGGAGGCGGCACTGGTAAGCGTAGCCGAATCATTGGCGAGAAG
GGCCCTGCCCTGGCAAGCTCAGCTTTGTCCCAGAGCACTCCAGGATCTCG
AGATTGCCAGAGTGAAGGTCAGCATGATGTGCAAGGGGTCTGTCTCGTAA
AGAAGGGTGGAAGGAGAGCTGCTTGTTGCCCGTCGGGTGCAATGTCACAC
GCGTAACGCAACTCTTGCGCGAAACGGTGAAGAGGACGATTTTTCCTTCG
GGTTGATGCGGGCGTAGAAGCATAGACAAGGATGTCAGTTGTTTTATCTC
TCGAATGTCCTTCCACAATTGCGTCTTTCTCTATCGATCTCAGTCTCTTG
CTCTCTCTCGTTCTCTAGCTCGGGTTAAAATATCGGGGCAGAATTTGGAG
GCGGCTTTCTGGCTAGAATGAAAAAGTTTAACCGCGCTTGTTTTCCGTGC
GAATGGTATCGAGCTTCACGCCAAGTCCTCCGTCTTCACTGTTCTAGATT
CTGCCGCTTTCTACCTCTTTTGTTTTCATATTTTGCGCGTGTCTTCGTTC
TTTCCAGATCTTTCATGCTTCTGAAAAGAAGCGGCAGGCGGTGAATAAGG
CTCGGCAAGACGAGATCTTCAGGGGACAGCTACTAGGGGAGGAACGATCC
TGGGAACTGTTCGGCAGGGCACAGGGCAGGTTGTTCGAGGGTTCTCTTGA
CAAGGTATGCCCGAGTCTACTCAGGCGTCGAGCAACCAAATCAAGTTAAT
TTTTCAGGCGGGCGCAATCACGCATCAACCAGTCCCTCGAGCATGCCACC
CTGCTTACACTACCCCAAGCAAGCTTTTTTCCGCACACGCTCCGCGAATT
TTTGCACGTGTAGCGAGGTACCAGCCTCCTATGATAATTTTAGAGAACTC
TCGAGGTAGATAACCTACACTGTACCGTTCGTGAAACCGTCGAAAGCGAG
CCACCGTCCTATAAGCGATCAAAAAACATTTTATGGTGAACGTCATTGTG
ACACGAAAAATTGTTTGTAACAACCACGTTTTCAGATCGCTGACTACGTG
AAAGTGCGCGAAAGCGACCACGCCGCGTATGTGTCTGCTCAGGCCCAGAT
GAGGACCGCTCGGGTGCAGAGTGTGGAGGTGAGGAGCGTGACTGGGGGTT
ATGAAACGACAACTTTGATAGAGGCTACTTCTTTTCCGCCTTTCACGGTG
TGGTGAAGGCTCCGATGAACCACATGCGCACATCCCAAGATTCAGGTATA
TATTGCTCGAGCGTACGAAGTTCAATTCGGCGTTTGTTCCTTGCTGCCGT
ATTCCACGGCAAACACGTGGTTGGTTGTCCCGCTAGACGAATGACTGGTT
GCCCTGCTAGATTGCTCGTGCAAAATGGTCTTGCCGATCAATATCATGCT
GGACCCTCCGATTGTGCCACTTTCCATCGTTTTGTGAGAGCGCGGAAACC
TCCACGATATGCGTGGATCATCCATTGCAGCTGCCACTTTCCTAGAATGG
TCGAGAATGCAGGTACCGCATGAAGCAAAAACTTTGGTGTGGCATGAGGT
GCCACATTACATACGTAGGGGTAATGGAAGGTGTTGCGCCTAGACGACGA
CCTGTCGATTGAAAATCCTGAACATGCATCAATTCACAACCTACGTCCCC
TTTGGCTTATCAACCAGGGGCTCGGTCGTCACAGCATCGACGTTCTCGAG
CAAGGGGAAGCAGACAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8174:2020..4687+

>mRNA_E_fasciculatus_S2_contig8174.16328.1 ID=mRNA_E_fasciculatus_S2_contig8174.16328.1|Name=mRNA_E_fasciculatus_S2_contig8174.16328.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=507bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8174:2020..4687+ (Ectocarpus fasciculatus EfasUO2)
TTGGGGCGGTCCGGATCTTCTTCAGACGGTTTCGGATTGTGGCCGAAACG
ACGACGAAAGGTTGGAGGCGGGGCAGGAGATGCCGCTGTGGAGTTCTTGG
ATGTTAGGGAGGCGGCACTGGTAAGCGTAGCCGAATCATTGGCGAGAAGG
GCCCTGCCCTGGCAAGCTCAGCTTTGTCCCAGAGCACTCCAGGATCTCGA
GATTGCCAGAGTGAAGATCTTTCATGCTTCTGAAAAGAAGCGGCAGGCGG
TGAATAAGGCTCGGCAAGACGAGATCTTCAGGGGACAGCTACTAGGGGAG
GAACGATCCTGGGAACTGTTCGGCAGGGCACAGGGCAGGTTGTTCGAGGG
TTCTCTTGACAAGATCGCTGACTACGTGAAAGTGCGCGAAAGCGACCACG
CCGCGTATGTGTCTGCTCAGGCCCAGATGAGGACCGCTCGGGTGCAGAGT
GTGGAGGGGCTCGGTCGTCACAGCATCGACGTTCTCGAGCAAGGGGAAGC
AGACAGC
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