mRNA_E_fasciculatus_S2_contig8151.16306.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8151.16306.1
Unique NamemRNA_E_fasciculatus_S2_contig8151.16306.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Vps8 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.960e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ
Sbjct:  408 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 462
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Vps8 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.960e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ
Sbjct:  377 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 431
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-13
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++  SRQL +N  + +HGPG  T  A HSKFIA+GTS+GL+L+FDHFQ
Sbjct:  190 GVVKVEAMETISRQLKKNIEFKEHGPGSPTVVAIHSKFIAIGTSKGLVLIFDHFQ 244
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Vacuolar (protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.170e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  166 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 220
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Phosphatidylinositol (transfer protein beta isoform n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DEQ5_PHYNI)

HSP 1 Score: 70.9 bits (172), Expect = 5.860e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  149 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 203
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Glucosidase (2 subunit beta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7R6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.910e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  690 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 744
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Vacuolar (assembly/sorting protein VPS8 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJW9_PLAHL)

HSP 1 Score: 70.9 bits (172), Expect = 5.910e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  165 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 219
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Vps8 (domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A484E0X2_BRELC)

HSP 1 Score: 70.9 bits (172), Expect = 5.910e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  163 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 217
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Vps8 (domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP)

HSP 1 Score: 70.9 bits (172), Expect = 5.910e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  150 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 204
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BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Match: Chromo (domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.920e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  478 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 532
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8151.16306.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Vps81.960e-27100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Vps81.960e-27100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.700e-1358.18protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Vacuolar4.170e-1356.36protein sorting-associated protein 8 n=1 Tax=Phyto... [more]
Phosphatidylinositol5.860e-1356.36transfer protein beta isoform n=1 Tax=Phytophthora... [more]
Glucosidase5.910e-1356.362 subunit beta (Fragment) n=1 Tax=Phytophthora pal... [more]
Vacuolar5.910e-1356.36assembly/sorting protein VPS8 n=1 Tax=Plasmopara h... [more]
Vps85.910e-1356.36domain-containing protein n=2 Tax=Peronosporaceae ... [more]
Vps85.910e-1356.36domain-containing protein n=1 Tax=Phytophthora soj... [more]
Chromo5.920e-1356.36domain-containing protein n=2 Tax=Nothophytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8151contigE_fasciculatus_S2_contig8151:88..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.4
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D8LRX0
Model size165
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
Exons1
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842476.9929252-CDS-E_fasciculatus_S2_contig8151:87..2401696842476.9929252-CDS-E_fasciculatus_S2_contig8151:87..240Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8151 88..240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842477.0088913-UTR-E_fasciculatus_S2_contig8151:240..2521696842477.0088913-UTR-E_fasciculatus_S2_contig8151:240..252Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8151 241..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8151.16306.1prot_E_fasciculatus_S2_contig8151.16306.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8151 88..240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8151.16306.1

>prot_E_fasciculatus_S2_contig8151.16306.1 ID=prot_E_fasciculatus_S2_contig8151.16306.1|Name=mRNA_E_fasciculatus_S2_contig8151.16306.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=51bp
MENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHF
Q
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mRNA from alignment at E_fasciculatus_S2_contig8151:88..252-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8151.16306.1 ID=mRNA_E_fasciculatus_S2_contig8151.16306.1|Name=mRNA_E_fasciculatus_S2_contig8151.16306.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=165bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8151:88..252- (Ectocarpus fasciculatus EfasUO2)
GGGGTGGTGAGGATGGAGAACCTGGACGCGGCCTCCCGGCAGCTGGCGAG
GAACGCGGCGTACGGGAAGCACGGGCCGGGGGTCTGCACGGCGACGGCGG
CGCACTCCAAGTTCATCGCCGTCGGGACGTCGAGAGGGCTGATTCTGCTC
TTCGACCACTTTCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8151:88..252-

>mRNA_E_fasciculatus_S2_contig8151.16306.1 ID=mRNA_E_fasciculatus_S2_contig8151.16306.1|Name=mRNA_E_fasciculatus_S2_contig8151.16306.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=153bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8151:88..252- (Ectocarpus fasciculatus EfasUO2)
ATGGAGAACCTGGACGCGGCCTCCCGGCAGCTGGCGAGGAACGCGGCGTA
CGGGAAGCACGGGCCGGGGGTCTGCACGGCGACGGCGGCGCACTCCAAGT
TCATCGCCGTCGGGACGTCGAGAGGGCTGATTCTGCTCTTCGACCACTTT
CAG
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