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Homology
BLAST of mRNA_E_fasciculatus_S2_contig814.16294.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY2_ECTSI) HSP 1 Score: 341 bits (874), Expect = 1.070e-108 Identity = 190/254 (74.80%), Postives = 199/254 (78.35%), Query Frame = 1
Query: 85 MAAAKRPTSEEAVTPLVEVMAELEQQPPLPASGGVQQHQQPQGFVAVEGVPVASATVRPFAYVGVPIDDDNNNEVRRPSPAAASYDEARAGAGRVHGDVGVGVGGDYAGAAEAAQASATRDNAAFFEKKRFTEAQAQSRVEEDLRAIEVGRINAKRRDAEGLDMRPHPGNRLEPEDTTPLQSKERAYGAGVGGYGGGSVQESSGKEXXXXXXXXXXXXXXXXXXXXGGYQCGEYVPAEYDISEYKSVYEKPSGK 846
MAAAKRPT+EEAV PLVEVM ELEQQ PLP SG VQQHQQP GF AVEGVPVA AT+RPFAYVGVPIDDDN+NE+RRPS AAASYD +RAGAGRVHGDV VGVG DY GAAEAA+ASA RDNAAFFEKKRFTEAQA+SRVEEDLRAIE RINAKRRDAEGLDMRPHPGNRLEPED TPL KER YGAG G GKE GGYQ EYVPAEYDI +YKSVYE+PSGK
Sbjct: 1 MAAAKRPTTEEAVAPLVEVMGELEQQSPLPDSGCVQQHQQPPGFAAVEGVPVARATMRPFAYVGVPIDDDNHNELRRPSTAAASYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPEDATPLGEKERDYGAG-GXXXXXXXXXXXGKEAAAVGEESAAGKGCEQEASGGGYQFSEYVPAEYDIPDYKSVYERPSGK 253
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2332 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_001480.1 |
| Cds size | 765 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842475.8161614-UTR-E_fasciculatus_S2_contig814:15798..15882 | 1696842475.8161614-UTR-E_fasciculatus_S2_contig814:15798..15882 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig814 15799..15882 + |
| 1696842475.8737123-UTR-E_fasciculatus_S2_contig814:20840..22323 | 1696842475.8737123-UTR-E_fasciculatus_S2_contig814:20840..22323 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig814 20841..22323 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842475.829048-CDS-E_fasciculatus_S2_contig814:15882..15951 | 1696842475.829048-CDS-E_fasciculatus_S2_contig814:15882..15951 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig814 15883..15951 + |
| 1696842475.8400927-CDS-E_fasciculatus_S2_contig814:18886..19206 | 1696842475.8400927-CDS-E_fasciculatus_S2_contig814:18886..19206 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig814 18887..19206 + |
| 1696842475.8511133-CDS-E_fasciculatus_S2_contig814:20205..20297 | 1696842475.8511133-CDS-E_fasciculatus_S2_contig814:20205..20297 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig814 20206..20297 + |
| 1696842475.8624196-CDS-E_fasciculatus_S2_contig814:20556..20840 | 1696842475.8624196-CDS-E_fasciculatus_S2_contig814:20556..20840 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig814 20557..20840 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig814.16294.1 >prot_E_fasciculatus_S2_contig814.16294.1 ID=prot_E_fasciculatus_S2_contig814.16294.1|Name=mRNA_E_fasciculatus_S2_contig814.16294.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=255bp
MAAAKRPTSEEAVTPLVEVMAELEQQPPLPASGGVQQHQQPQGFVAVEGV
PVASATVRPFAYVGVPIDDDNNNEVRRPSPAAASYDEARAGAGRVHGDVG
VGVGGDYAGAAEAAQASATRDNAAFFEKKRFTEAQAQSRVEEDLRAIEVG
RINAKRRDAEGLDMRPHPGNRLEPEDTTPLQSKERAYGAGVGGYGGGSVQ
ESSGKEVAGAGGGSAAGKGDEQEASGGGYQCGEYVPAEYDISEYKSVYEK
PSGK* back to topmRNA from alignment at E_fasciculatus_S2_contig814:15799..22323+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig814.16294.1 ID=mRNA_E_fasciculatus_S2_contig814.16294.1|Name=mRNA_E_fasciculatus_S2_contig814.16294.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6525bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:15799..22323+ (Ectocarpus fasciculatus EfasUO2)
GACCCGCTCACCCGGCCGAGACATCGCAGCGTAGCAGCGTAGCTGGTGCA
CACAGGCAGCGGAGCGGCATTTTCTCGGATTACAATGGCCGCGGCGAAAA
GGCCAACTAGCGAAGAAGCGGTGACTCCGCTGGTGGAGGTCATGGCGGAA
CTGGTGAGAAAAAATCGCGGTTTGCGATGTGTTTGCAAAAAAATACGCTC
TTCTCTTGCGGGGCAAGCTTCGCCCATCGTGCATGTCACACGGCACGGCA
GAGAGCGGTAGACGCGGCTGTCTACAGCAGTATACATGTGTACAGCATGG
TGACAAAACTGGTGTGCTGTGTGTGATATTTCTTGTCTCCCCATTCATTT
GCCGCTCTTTGCCGAAGGTATTACTACTGCTGTAAGGAAAAGTGAATTGT
ACAATATTCTTCTGCCGTGGCTGGCAGCTTCAACCCCCCACTTGTACATG
TACAATGCACAACGTTGACCATGACGCCATTTTGGAACACAAAGCACACG
TTGTGGACACTCATGTGTTCAAAGTTCAAGGGCAACTTTTTTGTAGAGCG
TGCACATTGATGGTTCGGCACGCCAGTGCGGCAATCCTTCTAATGCGACA
ACTAGTAGTGGAAACGTGCCTTTGAGTGGCCTTTTGACACGCGTACTCAA
GCCTGCTGTATGATCCAACTCTTGGTCTTCTGACTCTTGTTCGATCCGAA
GACGGTGTCCCACCCTCAAGCCTCAACCCTAGCCAGCATCGACCGGAGTA
CGCACTGCAATACACGGATGAGTTGCATTCTTTGCGTGCACCACTTTCAA
GCATCTCTCTGAGCATGGCATGGCGCCGACATTGGGTTGTTTGCCTACAG
CAGTACATGTACGGAATCGTTTTGCCGCACTGGCGACGTTGCCCTGACAT
GGACATGATGGCAGACAAACGCACCGTCAACAAGGGCCTCCATGGCCGCG
CTCCCCTGCATTGGCTTTTGCGATACTGGAGCTCGCCGTTTTGCACACCT
CGGTACGAATGAGGGAGCGGTATTAGCGTGGTTCTTTGACACTGCTTCCA
AGAACCAGCTTCAAAGAACCACGATATATTCAGCTCCCTCATTCGCACCG
AGGTTTGCAAAGCGGCGAGCTCCATCTTCACAACAGCCAACACACGGGGA
GCGGCCATGTATCTACGAGCTACCTATATTTTGTGTATGCATCGTACAAT
ACAGCAATACGCAAGAAGAACGGCAAAATTGCAGGTGTTGATGCGGTCCG
CCGTCTTTTTCACGGGCATTGTGAGTCAGGAATTTTTCCGAGGTGCTGAG
CTCACGCGAACGCCTGGGGGTGGTTGGGGTGTGCACAGGAGAGAGTGGTC
GAGCCCCAGGTATTCTATGATACCAGCACGCTCGAGAAGAACAGCCGGCT
TACCAGTGCAGCAGGGTGTTCGTTTGTTGACCGCACGTCGCACGTCGGAA
CAGGCCGAAGAGTGACTGGACAACGTGAAAACGGCCCCAAAATAATGCCG
CACACATTCCTTCGTCCTGTGTGACCCCGGCTGATACATGCGTCAAACAT
ACAACGGCGCCAGGCGCGGGGGGTCTTCTATCCGCCCCCCGTCCTCCGTT
GAAGAGTGATGGGCGGAGATGATTGCGTATGAAGTCGTACGCTCGTAGCA
TGGTCAGCTGCTGCATGCCAACGGGTGATGCCACAGCACCGTTGTTGTTG
CGCCGCTGGCCGTTGTGGACACACTGGCGAACCAACGACGGACAGAGCCT
GTTGGCACGGAGATGTTTGCCTCAGGAGACAGAGAGTAGAGATGAAGCGG
TAGGGCGATGGTTGAAGAAAAATGCCGAATACCGATGGGCGTGATGAAGA
GAGCGGCTGAAAAAGTCGCCGGTAATGTATGCGCCCCGTGCGTATTGATT
CCCTGTTCCCTATGCATACGTGACTGAAGAAGAAGAAGGGGTTGAGCACA
AGCACAAACTAAACGCTGCTCCTTCCTGTACACAACTGCTTTGAGGGTTT
GCATCAGCAGGAAACGCCGCACCGATAGCAAGATTTCTTAGTAAAACACA
AGCCGTCATCTCTCTATCAACATACTGCTGCACAAACACACAGATATGGC
AGAGAAATCAGAACAGTAGTGTGTGAATTAGATGAGGGTTTCTCTCAAGA
CGTTTGCGAGGTAGGGGTTAAATAGTTCACACTACACACCACGGAGCAAC
AGCGGCAGAGCTGTTAGACACGGGCCTGGCGCGATATCGACTGCAACACG
AGTGTCGCTCACCTCCATAGCAGATTCTCACGTTGTGCGCGGAGTGAGGA
GGTGTGTGCGCGTGTGTAATGTGGACGTTGATGATACAGCTACGCGTTTT
ACCAACACGTGGTAAGTGAGAGAGGCCACCACATGCCTCACATGACAGCG
GAGTACACCAGTACTCTCGCAGCGGCAGAGGGGGTACCGGTAGGCCCAAC
AGGCAGGCGCGCCACCGATTGCACAGACAAAATAATCTCGCGTCAGGAGT
TATGACTCAATGAATCGACGTTATCTGCCAACAGCTTGCCCGATGAGAGG
CGCGATTCTGAATATAATCAACACTCCCGCATCGATCCTCCCAGATGCAG
ATACGCAGTCAGAGACTGAAGAGCAATTCACGGTGCCTGTTAACTAGGGT
CGCGCGTCGAGTCTCGAGCTCGCGGCAGGGGGGTTTGAGCAGGAGAAACT
TCCCTCGCCCGTGTTTAAGTGTGCGTGTGCGGGCGAGCGGAAAGGTCGAA
CAAACCATCTTGAATTGAGACAGGTGGGATAGCCTCCCTGCGCTCTCAGC
GCTGCGCTCTCAGCGCTCCACAGTTGGAACAGCCTAAAGACACCCCCACC
TGAGATAGTTAGGTCTATTCCGAGAGTTGTAGGCTGGCGCCAGAACAGAC
GAGACGAGAGCACAAACACCGGGAAATCGCCTCGTTACCAAAGCCAAGGC
CACGAACAAGGCGTTCGAACATGAGGTCACACAACATCCGCGTCTACCGC
CATCCCTCTACCGATGTATTGTATTAATAGCAGCACTGACTTCTTCTTCG
ACGCGCGTCTTGGACACCACCTGAATAAATAAACGCAGGAGCAACAGCCG
CCTCTTCCTGCCAGCGGGGGCGTGCAGCAACACCAACAGCCGCAGGGCTT
CGTAGCGGTCGAAGGAGTGCCCGTGGCCAGCGCTACCGTGCGGCCTTTCG
CGTACGTGGGCGTCCCCATCGACGACGACAACAACAACGAGGTTCGGCGG
CCCTCTCCAGCTGCAGCGAGCTACGACGAAGCCCGCGCTGGGGCGGGCAG
AGTCCACGGCGACGTGGGCGTGGGGGTGGGAGGGGATTACGCCGGGGCGG
CAGAAGCCGCCCAAGCAAGCGCCACGAGAGACAACGCGGCGTTCTTCGAG
AAGAAAAGGTGACTTGTGGGGGGTCGCCATGGGTATGGTAGTGCGGAGGG
TTACGCATGGTGGTGTCGCACCAATCAAGCGCCGCGACAATGCGCGCATC
CCTCCTCGGCGGCGGGGAAGGGAGCACTGCTTTCGTCAGGATAAAAAACA
CGGAAATGCATACTTGTACGTTGGGAGGGCTCTACTCTCGACGAGACCTA
AAGAGGGAAGGAAGACAAACGCGACAAGCGGGGTTCTTGTGCGGACCCCG
ACGTTTCCCTACAAGGTCCGCCGACAGCTGCGGCTTTTACCGGCACGCGG
CAACATGCAATCACCGAGATGGTGCAAGTATCGTGGTGGTCCTGTGGCAT
TCCGGCACGCAGCACCATGCAACCACGGAATGCACTTCGGATGGTACGAC
TGTGGTCGGTGTCGACACCAACCTATAGTTGTACGATCCGTGGTGCTTTC
CATGGTTGCATGGTGCTGCGTGCCGGCTAAGCCTCTACTTGCACCATCTG
GCTTACGCTCGGCGGATTCATGCTGTTGCGTGCCGTTGAGCCTAAGCTGC
CGAAGCTGTCGGTGGGCCTTGACGGAAAAGTCAGGGTCCGCATGCGAACC
CCGCTTTGTCGCGTCTGTCTTCCTTCCCTCTTACGCTTTCGTCCGCTTGA
ATCATGCAATCCGCCGATAGTCAATTCTCCTGAGATACGAATGCGGGTTC
TTGTGGACGGATTGGTGCTTTTTTTTTTGCTCACATGAACGTGGGTGTAC
AACGAATTTTTGCACTTGCGGCTCTCGCTTTTTTCTTTCTCAAGTGGAAC
GTTGGTGTAGAATGAATTGGATCGCTTCGTCTCTCGCTTTTTCTTTTCGT
GTGATTGTTAGAATCGAAGGTTTTGTGGATCCAAAAACCCTGACTAACCC
TCATTCTCTTTCCTGTTCCCGCCCCCGCCTCCTCTCCCCTTCTCCACTCC
TCCCGTGTATGCCGCCGATTTGGATCGAAACCTCGTCCACGCTCCGATCA
ACGAAAGGTTCACGGAGGCGCAAGCGCAATCGCGAGTGGAAGAGGACCTC
CGGGCGATCGAGGTTGGGCGCATCAATGCCAAGCGACGGGACGCGGAAGG
TGCGAGGGAGGGAGTTCGAGGAAAAGCGGCGAAAGCAACGCTCCTTCCCT
ATTCGTATCTCCCTTCTACTCTTGGCCGCCTAGTTCAACTTGCTTGTATC
TCCCTTCGCTCTCCCGTTGCTAGGTTGCTTGTTTTTTTCTGTAGGGGTTC
GAACATTCCTCTTCCCTTCCCATGGCTAAGTGTGCCCTCTGATGCACATA
TCATACCCATCGACAACGATTTTTTGTTGTTGTTTTCTCTTGATCGTTCT
TGCTGAAGGACTCGACATGCGCCCTCACCCGGGCAACCGCCTCGAGCCCG
AAGACACCACTCCGCTTCAAAGCAAGGAGCGGGCCTACGGAGCGGGTGTC
GGGGGTTATGGCGGCGGCAGTGTGCAAGAATCGAGCGGAAAGGAAGTGGC
GGGGGCAGGGGGGGGGTCGGCAGCTGGGAAGGGGGATGAGCAGGAGGCAT
CGGGCGGGGGGTACCAGTGCGGCGAGTACGTGCCAGCGGAGTACGACATC
TCAGAGTACAAGTCCGTTTACGAGAAGCCCTCTGGGAAATAGGGTGCGAA
AGGGATCGAGCGTCTGATCCAGAAGGGGGGAATTACAAAGTTGTTGTTTA
CCGATGGCCGTATCGGCACACGAATCGATATGTAGAGCGCTTGAACCCCC
CCCCCCCAACCCCCAGTAGGGTCGAACGATACAGCTTTGTTGCTCTTGGA
GTTCTCCTGACACTGAAAGGACTTGCCGTTACATTACAGGAATCTTTCAG
AGGATGAGTTTTGATCGTGTCGACGATTGAGGTCTGGGGTGGTGGGGACG
GGGGGGCTATTTTGTACCCTCTTTGTGTTCGTTTTACCTGGCGTCCACGT
AGAGAGTAAAGTAAATGGTTCGCATCTTTCTACCCGGGAGCCTTTTGTTC
TTTTTGTCGAGAGGTAGCGAGGACACCGTCGCCGATGATCGAACGTGCGG
TCAGCGAACGTGGTTGGCGATACGGGGTCCCACCTTTGCTGGTATCCGGC
CAATGTCGGTTGAAGCCAGACAGATCCTTCGTGCGTTGTAGATATGTATT
GTAGATATTTCGGGAGGTGCATGTTTCAAGTTTCGGGAGGTTCCATCTGT
GAGGGTGGGGGTGTGGTCTCGTGCGCGGCATCGCCTTAATCGGGCGGGCA
CTGATCCTCATCCTTGCGCTCGTTGTATGTGTATCGAGTTTTTGGCGTGT
GGAGGGGGGCGTGCCGTTGAGGCCGTTTTGCGCGATCGGAACTGCGAACC
GAAACTTGTTGGCTATCCACGTAGGCCCGGCGCAAGCGTGGCAATTGAGC
GAGGTCCCCGTTCAAAGCGTACTACTGTAGCGCGCGGTTCCTTTTTTGTT
TTCCGTGTGTGGTTGATGTGTGTACAGTCGGCTCCCGAACGGAGTTGGGG
CCTCCTGGTGGTCCACAAAAGTTTTTAAAGTCGAATGTGTTGTTGTGAGT
GTACGTATGGTACAAACGAGAGAGGGAGCGAGTGAGAGTTACCGTAAGAG
TCGGAGAGATGGCACCGCCGTGTTTGCGTTTTTTAAAGCGTATTGCTCCA
CAACCAGGGGGGGTTCTGGAAACATCTCGTCGAGGGCTTTCCTGAGAGGT
ATCGGTTGGTGCTCGCACCCTCCTAGTTGTGGAGAAATACGCTATAAAAA
TACGCAACACGGGGGTGCCATCTCTCCGACTCTTCGGTACTCGCTTCCGG
TTATTCATGGTATTATACAACAGGAAACAAACGATGTATTGTATGCATAC
GAGGACAAGGTCTTCGTCGAAGCCAACTTTTTTTTCTGTATCAAGGAGAG
ATGATCGATCTTTAACGTCGACCGCGTTGGACTTGGCGAACGAAGGACGG
GTCACCAACCCCGCCCCTTCCCTTTCCAAACGACACGTGTTTATCCAAGT
TCCCCTTTTCTGGGGAAGTGTCTGGTGGTCGATTTCTCCATTTTTTCCCC
TGCACACATACGTGTAGATAGATAAGGCAAGGCGTGGGCCGCGTGCTGCC
TTCTCAGTGGCTGGTGCGTCAAACG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig814:15799..22323+ >mRNA_E_fasciculatus_S2_contig814.16294.1 ID=mRNA_E_fasciculatus_S2_contig814.16294.1|Name=mRNA_E_fasciculatus_S2_contig814.16294.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:15799..22323+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGCGGCGAAAAGGCCAACTAGCGAAGAAGCGGTGACTCCGCTGGT
GGAGGTCATGGCGGAACTGGAGCAACAGCCGCCTCTTCCTGCCAGCGGGG
GCGTGCAGCAACACCAACAGCCGCAGGGCTTCGTAGCGGTCGAAGGAGTG
CCCGTGGCCAGCGCTACCGTGCGGCCTTTCGCGTACGTGGGCGTCCCCAT
CGACGACGACAACAACAACGAGGTTCGGCGGCCCTCTCCAGCTGCAGCGA
GCTACGACGAAGCCCGCGCTGGGGCGGGCAGAGTCCACGGCGACGTGGGC
GTGGGGGTGGGAGGGGATTACGCCGGGGCGGCAGAAGCCGCCCAAGCAAG
CGCCACGAGAGACAACGCGGCGTTCTTCGAGAAGAAAAGGTTCACGGAGG
CGCAAGCGCAATCGCGAGTGGAAGAGGACCTCCGGGCGATCGAGGTTGGG
CGCATCAATGCCAAGCGACGGGACGCGGAAGGACTCGACATGCGCCCTCA
CCCGGGCAACCGCCTCGAGCCCGAAGACACCACTCCGCTTCAAAGCAAGG
AGCGGGCCTACGGAGCGGGTGTCGGGGGTTATGGCGGCGGCAGTGTGCAA
GAATCGAGCGGAAAGGAAGTGGCGGGGGCAGGGGGGGGGTCGGCAGCTGG
GAAGGGGGATGAGCAGGAGGCATCGGGCGGGGGGTACCAGTGCGGCGAGT
ACGTGCCAGCGGAGTACGACATCTCAGAGTACAAGTCCGTTTACGAGAAG
CCCTCTGGGAAATAG back to top
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