mRNA_E_fasciculatus_S2_contig814.16292.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig814.16292.1
Unique NamemRNA_E_fasciculatus_S2_contig814.16292.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig814.16292.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLH0_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 3.320e-107
Identity = 176/256 (68.75%), Postives = 181/256 (70.70%), Query Frame = 1 
Query:    1 MAELI-CGKEAAADAQDDVPVSGFHNPLFSSAVAGAPKDERLFPTTKDEETNEGRKSSSMVMRRHVKKDCRQDGTLVDNTKKRVDRSQKMASERQMRRVSSLDVPACVVVKSEDASDAGSILQHCAFRMEAFRVHTKNQPVAAXXXXXXXXXXXXXXXXXXXXHGGQPNQAALEVTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQVRG 765
            MAELI  GKEA ADAQDDV VSGFHNPLFS+AV+GAPKDERLFPTTK EE NE RKSSSMVMRRH+KKDCRQDGTLVD TK+RVDRSQK+ SERQMRRVSSLDVPACV VKSEDASDAG ILQHCAF MEAFRVHTKNQ VAA                    HGGQPNQA LEVTH                                        RVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQ RG
Sbjct:    1 MAELIGIGKEAEADAQDDVAVSGFHNPLFSNAVSGAPKDERLFPTTKGEEANERRKSSSMVMRRHMKKDCRQDGTLVDKTKRRVDRSQKITSERQMRRVSSLDVPACVAVKSEDASDAGEILQHCAFHMEAFRVHTKNQTVAAGAPTPTTFMFVF--------HGGQPNQATLEVTHTPPCLTPARGKAGDGGGEEPDPTSEGEG------------RVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARG 236
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig814.16292.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.320e-10768.75protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig814contigE_fasciculatus_S2_contig814:136..4513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size765
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001460.1
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.6299171-CDS-E_fasciculatus_S2_contig814:135..5341696842475.6299171-CDS-E_fasciculatus_S2_contig814:135..534Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig814 136..534 -
1696842475.6428587-CDS-E_fasciculatus_S2_contig814:1306..14271696842475.6428587-CDS-E_fasciculatus_S2_contig814:1306..1427Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig814 1307..1427 -
1696842475.6601539-CDS-E_fasciculatus_S2_contig814:2165..22911696842475.6601539-CDS-E_fasciculatus_S2_contig814:2165..2291Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig814 2166..2291 -
1696842475.670799-CDS-E_fasciculatus_S2_contig814:4394..45131696842475.670799-CDS-E_fasciculatus_S2_contig814:4394..4513Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig814 4395..4513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig814.16292.1prot_E_fasciculatus_S2_contig814.16292.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig814 136..4513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig814.16292.1

>prot_E_fasciculatus_S2_contig814.16292.1 ID=prot_E_fasciculatus_S2_contig814.16292.1|Name=mRNA_E_fasciculatus_S2_contig814.16292.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=255bp
MAELICGKEAAADAQDDVPVSGFHNPLFSSAVAGAPKDERLFPTTKDEET
NEGRKSSSMVMRRHVKKDCRQDGTLVDNTKKRVDRSQKMASERQMRRVSS
LDVPACVVVKSEDASDAGSILQHCAFRMEAFRVHTKNQPVAAAAAAAAAA
GVPTPTTFMFVFHGGQPNQAALEVTHTPCPTPAASKGQGGGGGGGGGGGG
GGGGGEEPDPSSQGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPR
KQVRG
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mRNA from alignment at E_fasciculatus_S2_contig814:136..4513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig814.16292.1 ID=mRNA_E_fasciculatus_S2_contig814.16292.1|Name=mRNA_E_fasciculatus_S2_contig814.16292.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:136..4513- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAATTGATTTGTGGCAAGGAGGCGGCAGCGGACGCCCAAGACGA
TGTCCCAGTTAGCGGGTTCCACAATCCCTTGTTTTCGAGCGCCGTAGCCG
GCGCTCCGAAAGATGAGAGGTGAGTCGACTGATGAATCCGTCCCAACGCT
GGCCGCCTACGTGAAAGGAGACGTGTAGCGGGCGTCTGAGAACGAAGGCT
GAGCCAGGGCGTTGGTGTGAGGATGTATGCGTGCACGGTGGCGACCGAAA
ATACGTGCTATACGTAGCCACATGTGGGAATTTGCGAATTTGGAGCGAGA
TCTCATCATGTCGGTGTCCATCATATTTATCATTTTCATCCCACCCGGCA
CTTTAGCAGCAGGGCCCACACACGTTCAGGTCTCTACGTTCTCTCTCGCA
CACTCTCTTTCCTCTCCCTCGACTCCTCGTGCCCCTCCGAAAGCAGAGGA
GGTGTGTGTGTGTGTATTGTAAACGGAAGACGTGACTCACCAACGAGATC
CGAGCGAGAGAGAGAGAGAGAGAGAGCCAGCTCTCGCGTCAAATATTTGT
ATCTTGGGCGTTAACGGTGTGACCCGGGTCTCCCGGTGGCACACATATGC
CGATACATGTAGTATCTCTTTGTTCTCCTGGCCAGCGGGGAAACTGAAGG
TGTAGATAGACTGTATGGGGTCTCGCATGGAGTCCCGAAACAAGGCAGAC
GGGCTAGATGGGTATTTTCCAAGAGCGTACGTTCGTTCTGTACGATGTTG
CCGGAATGAATGATGGATTGATGCGCCCTTGTGGTGGACCTTGTGGAGGA
CCGTTTGGCGGCCTCGTTTGTTTATTACACCTGTAGCAGTGCGAAGGTTG
GGTTCCCAACACCTGTACCATGGTGTATGGTATTCTCCACCGGGCAACAC
GAAAATTACCCCCTGCCGCTGAGGACCAAGGTGTATGTAAGGCTATGATG
TAGGGTGGACCAATCCAGCTGGACCCAGTTTGTTCGGTGGAATGGCCCTC
TGGTTGTTTGCGAAATCTTGTTTTGCCTGCGCGTCGTCTAACAAGGGGTA
AGCACTTGACTTGACATTAGGGCCCAAACGTGTCGTAACCTGATAACCCG
AACCCCGACACCCCAAACTGTTGATAACCCGAGGGTGGCACAAAAGTATA
CTGTGGCGTGTTCATAGCTGTAGGTATGGTATGTGCGTAGTCCACCACTT
AAAATTAACGGAAGCACACACACCCGGTGGTATACAGCGTTTTGACTCCT
GGGAGTGTTGTTGTGTGGGCGGGTGTGGTATGTCCTGTGCCACTTTTTAT
TTGATCTGCCAATCAATAGTTTTTGTTTTGGACCCATGTTGACCCGTGGA
AGTATTTCCACCTGGTGTGGCATTGCTTGTGGTTTGTCTTCGGGGTGTTA
TCTTGTGCCGTACACAGCAGTACCTTGTGCGGATATGAACGTTCGCTCGC
ATGGTGTGGTTACTCGGTTGGTTGTGGAGTATTTTTCATGTGTCTTTTGC
GTAATGAAACGCCTAGCTTCGATGCCCGTCAGCACAGAGGCGGTTCACGA
ACCGCACAACACGTGCATTCCTCTCCATCTGCTGCTCCCTGGTCTGCCTT
TGTTCCGGAGAACCGCCTATAGCCTCCCCTATTTGCCCCCCTCGGGGGGT
CCCAGATCATGCCTTCTTGAAACGTATTTCGTCTCAAGCCTCACTGACAT
TGGCGTCTTTTTGTTCGTCAGCCAGTTAGCGAAGTCTATGCCAACAGCAG
AGACACCCGGATGTCTTCTTCTTGGTCAACCGCTAAGCGAGGTCAACGCT
AGTAGTAAACACCCACAGGCATCATCGTAGGACCCCAGTTCATATCCTTT
AGAAGCGTTTCCCGTTGCTACCCCACGATAAGTCTGACATGTGTTATCAT
TGATCAGACGGGTAGCGTGGTCCAAGAAAATACCGGCGGCGAGCGTGGTG
GCGCTTTGGTGCCCTTATACGACTGGCCCCTTGGTCAGCCAGTTAGAGCG
GTCAATGCTGACTTGCAAGAAGCACACACACACACACGCACACAACGTCC
CTCAATTGACCCCCCCCCCACCGCCCACCATCCCTATACGCGGCGTGTTT
TTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTTTTGCTACTGCTGTCGGCCGTTTTTGTCTGGATGTCCCTCGTGGGTG
TCGTGTCGTGTCGCGTCGTTAGGCTTTTCCCCACCACTAAGGACGAGGAA
ACGAACGAGGGCAGGAAATCCTCGAGCATGGTCATGCGGCGGCACGTGAA
GAAGGACTGCCGACAGGACGGCACGTTGGTCGACAACACCAAAAAGCGGT
GAGTCATTCTCGTAGGGATCTGTACGCCAGCAGCATACAACGACCAGTAG
TCTCCGTGTCGATGTCGCTCGTGCAAAGGTTGGCCTGCATCCACGGAAGA
CATCTTCGTCAGTTGGACGGGTATGGATGTTAGGGGTAACTGAGCAGAGA
CCGGAGCGATTTTCGATGTGAAGACAACAACAACAACAACATCTCAATAC
CAACAACAACATTATTGCGGAGGGGTCCTGATACCGCTGTCTCGGAACGT
GCCGCCTAAGGGCAAGTTTTTTTTCGGTACCGCGCGTGCATCACCGCTCA
CTTCTTTTTTGATTACGGCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGGGTGTAGTTAGGTTGAGCGCCACCACACATATGCGTG
GTTGTGTGGATTTGCGAGTGCGCCGAATATTCCAGCGACCGCAACCGTCG
ATGCACTCCAGCGACGTCGATACAGATATTGTACCCACATGTGCTCATAG
GACTCGCAGGTTGGCCAACACGCGCACGCGCTCGAAATAATTCCCAGCGG
GACTCGATCAGAGGAAACAGTTTGTTTCCGTCTGAGGGAGGGAGGGAGGG
GTGTAAGACAAGACATGCTGCCCATGTTCTTTCACTTCGTTGCAAGGATA
TTTTTGCGGCATGGTTGAACATTGCTTTGTCAACTGCCGCGTACGTATTT
TTTTCGTGTGCCTCGCTCAATGATTTGTTCCGACAGGGTGGATCGGTCGC
AGAAGATGGCCAGCGAGAGGCAAATGAGGAGGGTCAGCTCCCTGGACGTG
CCGGCGTGCGTCGTGGTGAAGTCGGAAGACGCTTCCGACGCTGGGTCGAT
TCTGCAGGTGTGCGTGTGTCGTCGGTGTGTGTGTGTGTTATTTACTAGCA
ATGGCCGCGCCAACGGGCTGACCAATGCAAAAATGCGCCATTGCCAAGTG
GTGCGTACGTATGTTTGTGTGTGTTTTACCTTCGCGTGGTTGTTTGGGGA
GCAACGGCCGCACCAACCGGGCGACCAATGAAATGTACAGCATGGCTTGA
GTGAATGGGGCAACCATGTGAGTGTATTCGTGAGTGTAGAAGAGAGATAG
TCAAGAGAGAGAGCGATAAATGGTGGTTGTCGATACAAAGCGGCGATCGT
CTCCTGCTCGTACGTAGATTAGTTACGTGTGGTTGTCAAAGCCCCCGCGC
GCCGTTGTCCACTTTTGTGTCCGACTGAGCCCTGTTGCGTAACAGGTCTG
TCCTCCCGTCGCGGGACGTCAGTTCGTGCAGATGGCTGGCTGCTGCGGTA
GCGGAGAAGCCGAGGGCATGAGCGGGTTCGAGCAAAGGCCGCAAAGCCCT
GACCCGATGTAGTCGTGCCTTGGTCCGCGTGTGTCGAGAGCAACCCCCTC
CTCCACATTCTCGTCGCCGTGCGGGGTAAGCACCCAAGCGCAGGGTTGTG
GCACGATCTTCCGAGTACGCTCGTGCCGCGCACGGGTCCCACAACAGCCA
TCTCGCCTGTGCCGCCTTCAGAAAATACACCATACCATTGTGTCAGTCCT
TTCCACCCTTAACAACCCCCTCCTCTCTTCGGCCGCCGCCCTCCCGGGGA
AAACACACCCGCCCACCGTCAACAAACAGCATTGCGCGTTCCGCATGGAG
GCCTTCCGGGTGCACACAAAGAACCAGCCGGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGGAGTGCCGACACCGACGACGTTCATGTTCGTGTTCC
ACGGGGGGCAGCCAAACCAAGCGGCCCTCGAGGTCACGCACACGCCTTGC
CCGACTCCTGCCGCGAGCAAGGGGCAGGGGGGCGGCGGCGGCGGCGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGGGGAGAGGAGCCGGACCCTAGCAGCC
AAGGAGAGGGTCGCGTCACGATGACCCTGGGAGGGAACAACGTCCCGCAC
CGCCCGGGTGAGCCGTACTCGTGCTACATCCGCCAGGTCGGGCACGTCAC
CTTCAACCCGCGCAAACAGGTGAGGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig814:136..4513-

>mRNA_E_fasciculatus_S2_contig814.16292.1 ID=mRNA_E_fasciculatus_S2_contig814.16292.1|Name=mRNA_E_fasciculatus_S2_contig814.16292.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig814:136..4513- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAATTGATTTGTGGCAAGGAGGCGGCAGCGGACGCCCAAGACGA
TGTCCCAGTTAGCGGGTTCCACAATCCCTTGTTTTCGAGCGCCGTAGCCG
GCGCTCCGAAAGATGAGAGGCTTTTCCCCACCACTAAGGACGAGGAAACG
AACGAGGGCAGGAAATCCTCGAGCATGGTCATGCGGCGGCACGTGAAGAA
GGACTGCCGACAGGACGGCACGTTGGTCGACAACACCAAAAAGCGGGTGG
ATCGGTCGCAGAAGATGGCCAGCGAGAGGCAAATGAGGAGGGTCAGCTCC
CTGGACGTGCCGGCGTGCGTCGTGGTGAAGTCGGAAGACGCTTCCGACGC
TGGGTCGATTCTGCAGCATTGCGCGTTCCGCATGGAGGCCTTCCGGGTGC
ACACAAAGAACCAGCCGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GGAGTGCCGACACCGACGACGTTCATGTTCGTGTTCCACGGGGGGCAGCC
AAACCAAGCGGCCCTCGAGGTCACGCACACGCCTTGCCCGACTCCTGCCG
CGAGCAAGGGGCAGGGGGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGAGAGGAGCCGGACCCTAGCAGCCAAGGAGAGGGTCG
CGTCACGATGACCCTGGGAGGGAACAACGTCCCGCACCGCCCGGGTGAGC
CGTACTCGTGCTACATCCGCCAGGTCGGGCACGTCACCTTCAACCCGCGC
AAACAGGTGAGGGGG
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