mRNA_E_fasciculatus_S2_contig8136.16288.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8136.16288.1
Unique NamemRNA_E_fasciculatus_S2_contig8136.16288.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8136.16288.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.720e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 LPTEMPSDIRSVRVTTEVLAEKEGEEPTLAVHVIVDRSVPVLGWVLMVLALFGCAAM 171
            LPTEMPSDIRSVRVTTEV+AEKEGEEPTLAVHVIVDRSVPVLGWVLMV ALFG AAM
Sbjct:  540 LPTEMPSDIRSVRVTTEVVAEKEGEEPTLAVHVIVDRSVPVLGWVLMVSALFGLAAM 596
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BLAST of mRNA_E_fasciculatus_S2_contig8136.16288.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.510e-23
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 LPTEMPSDIRSVRVTTEVLAEKEGEEPTLAVHVIVDRSVPVLGWVLMVLALFGCAAM 171
            LPTEMPSDI+SVRVTTEV+ EKEGEEPTLAVHVIVDRSVPVLGWVLMV ALFG AAM
Sbjct:  312 LPTEMPSDIQSVRVTTEVVTEKEGEEPTLAVHVIVDRSVPVLGWVLMVSALFGLAAM 368
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8136.16288.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.720e-2494.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.510e-2391.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8136contigE_fasciculatus_S2_contig8136:557..727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-22_001320.1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.3355691-CDS-E_fasciculatus_S2_contig8136:556..7151696842475.3355691-CDS-E_fasciculatus_S2_contig8136:556..715Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8136 557..715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842475.346108-UTR-E_fasciculatus_S2_contig8136:715..7271696842475.346108-UTR-E_fasciculatus_S2_contig8136:715..727Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8136 716..727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8136.16288.1prot_E_fasciculatus_S2_contig8136.16288.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8136 557..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8136.16288.1

>prot_E_fasciculatus_S2_contig8136.16288.1 ID=prot_E_fasciculatus_S2_contig8136.16288.1|Name=mRNA_E_fasciculatus_S2_contig8136.16288.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=53bp
MPSDIRSVRVTTEVLAEKEGEEPTLAVHVIVDRSVPVLGWVLMVLALFGC
AAM
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mRNA from alignment at E_fasciculatus_S2_contig8136:557..727-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8136.16288.1 ID=mRNA_E_fasciculatus_S2_contig8136.16288.1|Name=mRNA_E_fasciculatus_S2_contig8136.16288.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=171bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8136:557..727- (Ectocarpus fasciculatus EfasUO2)
CTCCCGACGGAGATGCCCAGCGACATCCGGTCCGTGAGAGTGACGACCGA
AGTTCTCGCCGAAAAGGAGGGGGAGGAGCCTACCCTGGCCGTGCACGTGA
TCGTGGACCGCAGCGTGCCCGTGCTGGGCTGGGTGCTCATGGTCTTGGCG
CTGTTCGGCTGCGCCGCGATG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8136:557..727-

>mRNA_E_fasciculatus_S2_contig8136.16288.1 ID=mRNA_E_fasciculatus_S2_contig8136.16288.1|Name=mRNA_E_fasciculatus_S2_contig8136.16288.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=159bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8136:557..727- (Ectocarpus fasciculatus EfasUO2)
ATGCCCAGCGACATCCGGTCCGTGAGAGTGACGACCGAAGTTCTCGCCGA
AAAGGAGGGGGAGGAGCCTACCCTGGCCGTGCACGTGATCGTGGACCGCA
GCGTGCCCGTGCTGGGCTGGGTGCTCATGGTCTTGGCGCTGTTCGGCTGC
GCCGCGATG
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