mRNA_E_fasciculatus_S2_contig8111.16270.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8111.16270.1
Unique NamemRNA_E_fasciculatus_S2_contig8111.16270.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8111.16270.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.240e-14
Identity = 90/163 (55.21%), Postives = 93/163 (57.06%), Query Frame = -2 
Query:    3 YRDDGRGDGFKDDCSGXXXXXXXXXXXXXXXXXXXXXSRSMPPAEEASGFTRAGTKPPGAAVLKSFGRAPAPXXXXXXXXXXXXXXXXXXXXXXXXXSLPFPVFVDANPPPSAGKPRNRGRXXXXXXXXXXXXXXXXXXXXXXXXXX--VVSPSSRRRGGELS 485
            YRD G GD  KDDCSGXXXXXXXXXXXXX         RSMP A  A GF RA  K PG AV++ FGR PAP                         SLPFPVFVDANPPP AGKPRNRG                  XXXXXXXXX  V+SPSSRRRGGELS
Sbjct:  308 YRDRG-GDRSKDDCSGXXXXXXXXXXXXXGFP------RSMPMAGHAPGFARAEKKLPG-AVVRVFGRGPAPPGDDAAGATPEVAAGTAAAS-----SLPFPVFVDANPPP-AGKPRNRGATAAFSAPAEKALEEELPXXXXXXXXXXVVMSPSSRRRGGELS 456
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8111.16270.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.240e-1455.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8111contigE_fasciculatus_S2_contig8111:1788..2273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size486
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001580.1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842472.6112862-CDS-E_fasciculatus_S2_contig8111:1787..22731696842472.6112862-CDS-E_fasciculatus_S2_contig8111:1787..2273Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8111 1788..2273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8111.16270.1prot_E_fasciculatus_S2_contig8111.16270.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8111 1788..2273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8111.16270.1

>prot_E_fasciculatus_S2_contig8111.16270.1 ID=prot_E_fasciculatus_S2_contig8111.16270.1|Name=mRNA_E_fasciculatus_S2_contig8111.16270.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=162bp
MESSPPRLREDGDTTAAAAAGSGSGGSFSLACSAITAAVVVLPRLRGFPA
EGGGLASTNTGNGNDDDDDDDDAAAVVPTATTSPPPPPLGGAGARPKDFR
TAAPGGFVPARVNPEASSAGGIDRENPPPPPLPPAAAAVDASSLPPPLQS
SLNPSPRPSSR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8111:1788..2273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8111.16270.1 ID=mRNA_E_fasciculatus_S2_contig8111.16270.1|Name=mRNA_E_fasciculatus_S2_contig8111.16270.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8111:1788..2273- (Ectocarpus fasciculatus EfasUO2)
ATGGAGAGCTCTCCTCCACGCCTGCGCGAGGACGGCGACACCACCGCCGC
CGCCGCCGCTGGCAGCGGGAGCGGGGGCTCCTTCTCTTTGGCTTGCTCTG
CCATCACAGCGGCGGTTGTTGTCCTGCCGCGGTTGCGGGGTTTCCCGGCG
GAAGGAGGCGGGTTGGCGTCTACGAACACGGGGAACGGCAACGATGATGA
TGATGACGATGACGATGCTGCCGCCGTCGTGCCCACGGCTACTACATCAC
CACCACCACCACCACTCGGAGGCGCAGGAGCACGTCCGAAAGACTTCAGG
ACAGCAGCACCTGGCGGTTTCGTCCCCGCTCGGGTGAATCCCGAAGCCTC
TTCTGCCGGTGGCATCGACCGAGAAAACCCTCCGCCCCCGCCCCTGCCGC
CGGCAGCAGCAGCAGTAGACGCATCATCGCTACCACCGCCGCTGCAATCG
TCCTTGAATCCATCACCGCGGCCGTCGTCGCGATAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8111:1788..2273-

>mRNA_E_fasciculatus_S2_contig8111.16270.1 ID=mRNA_E_fasciculatus_S2_contig8111.16270.1|Name=mRNA_E_fasciculatus_S2_contig8111.16270.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8111:1788..2273- (Ectocarpus fasciculatus EfasUO2)
ATGGAGAGCTCTCCTCCACGCCTGCGCGAGGACGGCGACACCACCGCCGC
CGCCGCCGCTGGCAGCGGGAGCGGGGGCTCCTTCTCTTTGGCTTGCTCTG
CCATCACAGCGGCGGTTGTTGTCCTGCCGCGGTTGCGGGGTTTCCCGGCG
GAAGGAGGCGGGTTGGCGTCTACGAACACGGGGAACGGCAACGATGATGA
TGATGACGATGACGATGCTGCCGCCGTCGTGCCCACGGCTACTACATCAC
CACCACCACCACCACTCGGAGGCGCAGGAGCACGTCCGAAAGACTTCAGG
ACAGCAGCACCTGGCGGTTTCGTCCCCGCTCGGGTGAATCCCGAAGCCTC
TTCTGCCGGTGGCATCGACCGAGAAAACCCTCCGCCCCCGCCCCTGCCGC
CGGCAGCAGCAGCAGTAGACGCATCATCGCTACCACCGCCGCTGCAATCG
TCCTTGAATCCATCACCGCGGCCGTCGTCGCGATAG
back to top