mRNA_E_fasciculatus_S2_contig8102.16264.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8102.16264.1
Unique NamemRNA_E_fasciculatus_S2_contig8102.16264.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8102.16264.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG1_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 2.760e-78
Identity = 198/269 (73.61%), Postives = 204/269 (75.84%), Query Frame = 1 
Query:  877 MNGFKGGDRFVGGAQFKASSSSRNGXXXXXXXXVGGKSCGGCLQVREALRRSRVECRDLRGSLFRAEHVIKQLTLTKAARRRGANQSGSYTAH---QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTCSSSRNDGHAGEAPSRENLLSRVQELERELRLADFRDARSMGAAVGAEHIRARKNVMDDEVHLNKSDSDHDANVSSLKKSSSASLRGALGKTSGAGSSRISSSVWDWEGLPPCSKCSALNDRLLGE 1674
            MNGFKGG+RFVGGAQFK S+SSRNG   XXXXX   KSCGGCLQVREALRRSRVECRDLRGSLFRAEHVIKQLTLTKA RRRG NQSG+YTA    Q            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       RNDGHAGEAPSRENLLSRV+ELERELRLADFRDARS+GAAVGAEH RARKN MDDEV+LNKSD                  R ALGKTSG         VWDWEG PPC KCS LNDRLLGE
Sbjct:    1 MNGFKGGNRFVGGAQFKGSNSSRNGQHGXXXXXXXXKSCGGCLQVREALRRSRVECRDLRGSLFRAEHVIKQLTLTKATRRRGPNQSGNYTAQLGLQLSLSSPSLAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDGHAGEAPSRENLLSRVRELERELRLADFRDARSLGAAVGAEHSRARKNSMDDEVNLNKSDXXXXXXXXXXXXXXXXXXRRALGKTSGXXXXXXXG-VWDWEGPPPCRKCSVLNDRLLGE 268
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BLAST of mRNA_E_fasciculatus_S2_contig8102.16264.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWY6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.250e-16
Identity = 39/55 (70.91%), Postives = 41/55 (74.55%), Query Frame = -2 
Query:    3 GLGTRFTAFASKRRFAGTGEAPPKVAKELNEPLWCCGGESSLFNGGSGETGWVVN 167
            G G       +  RFAGTGEAPPK A ELNEPLWCC GESSLFNGGSG+ GWVVN
Sbjct:   22 GKGREKPTTTTGGRFAGTGEAPPKAAIELNEPLWCCVGESSLFNGGSGDMGWVVN 76
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8102.16264.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.760e-7873.61protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG1... [more]
Uncharacterized2.250e-1670.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8102contigE_fasciculatus_S2_contig8102:1..2761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score274.6
Seed ortholog evalue1e-70
Seed eggNOG ortholog2880.D8LCG1
Model size1674
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2D168@1,2SGVV@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004880.1
Cds size1674
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842471.8135238-CDS-E_fasciculatus_S2_contig8102:0..1981696842471.8135238-CDS-E_fasciculatus_S2_contig8102:0..198Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8102 1..198 -
1696842471.8266966-CDS-E_fasciculatus_S2_contig8102:461..9291696842471.8266966-CDS-E_fasciculatus_S2_contig8102:461..929Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8102 462..929 -
1696842471.8366046-CDS-E_fasciculatus_S2_contig8102:1267..19941696842471.8366046-CDS-E_fasciculatus_S2_contig8102:1267..1994Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8102 1268..1994 -
1696842471.846889-CDS-E_fasciculatus_S2_contig8102:2480..27611696842471.846889-CDS-E_fasciculatus_S2_contig8102:2480..2761Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8102 2481..2761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8102.16264.1prot_E_fasciculatus_S2_contig8102.16264.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8102 1..2761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8102.16264.1

>prot_E_fasciculatus_S2_contig8102.16264.1 ID=prot_E_fasciculatus_S2_contig8102.16264.1|Name=mRNA_E_fasciculatus_S2_contig8102.16264.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=558bp
MFTTQPVSPLPPLNSDDSPPQHQRGSFNSFATFGGASPVPANRLFEAKAV
NLVPRPKTSTSYTRQLSSSSSLGLFPASSSPSPSSPNGDQPAPRHDKDMA
RPRAFSASEQHHQQQPKHVNSASAHGDELDRSSGSNNNKQLPSATAPTAE
AVPRWSSSLEGHASSASAPATVGLVSPETARLTSPQQHHNATNTHHSNNS
NRSRRNDSGRGGNTAGAFSIPRSDSLGNAQSQPRAQTTSALRRSSSATSE
TFSNGGRGFNGGNGTSSAGASVASSNDPNVLKVEINRLQAALMNGFKGGD
RFVGGAQFKASSSSRNGQRGGGGGGVGGKSCGGCLQVREALRRSRVECRD
LRGSLFRAEHVIKQLTLTKAARRRGANQSGSYTAHQQSSSSSLFAGGATT
AAITAASEEQERRLVPQMLTTSGCCGGERGGTCSSSRNDGHAGEAPSREN
LLSRVQELERELRLADFRDARSMGAAVGAEHIRARKNVMDDEVHLNKSDS
DHDANVSSLKKSSSASLRGALGKTSGAGSSRISSSVWDWEGLPPCSKCSA
LNDRLLGE
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mRNA from alignment at E_fasciculatus_S2_contig8102:1..2761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8102.16264.1 ID=mRNA_E_fasciculatus_S2_contig8102.16264.1|Name=mRNA_E_fasciculatus_S2_contig8102.16264.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2761bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8102:1..2761- (Ectocarpus fasciculatus EfasUO2)
ATGTTTACAACCCAGCCCGTTTCTCCGCTGCCGCCGTTGAACAGCGATGA
TTCCCCTCCGCAGCACCAAAGGGGTTCGTTCAACTCCTTTGCGACCTTCG
GGGGTGCCTCTCCAGTGCCGGCAAACCGCCTTTTCGAGGCGAAAGCGGTA
AACCTTGTACCCAGGCCGAAGACGAGCACGTCTTATACCCGCCAGCTGTC
GTCGTCCTCCTCTCTCGGCCTGTTTCCGGCCTCTTCGTCGCCTTCACCCT
CCTCGCCAAATGGGGACCAGCCGGCGCCGAGGTAACCGCAATGTACACGT
CTAGCACACAAGGCATGATTGAATGTTTTCTGTACGCGGACTAAACACCG
CAGTGGTCATGCTGAGTGAAGTGGACGTTCACTAGTCCCACCTCGCCGCA
CAGAACGAGTCGAACGTCTGTCAGTGTACAGTAGTATAAGCATACCAGGA
GTGCCTGCTTAGACTACTGCGGTAGCTGAGTAAACAAGGCAGAGAGTGCG
TGACTACATAGGCTGTTATGTAGTGATACAATGGCTCGTATAACACTGCA
TGTGCTGTAGAATACGTTGCTACTACCACCGCTGGGCCATTTCTGCTTTC
CCTCCGGCCTTGGCGTCTCTCACTGAAGGACCCCCACCCATGGACACACA
AAGGCATTCCTCTGCGGCTCACCCTTTCATTGTAAACGCGAGACAGGTTC
AGCCTAGCGAATACCAGCCACCTGCTCCTTCCTTAAACCTGCTGTCTCGT
TCCGCACACTCACCCAGGCACGACAAGGACATGGCAAGACCGAGAGCGTT
TTCGGCAAGTGAGCAGCACCATCAACAACAGCCGAAACACGTGAATAGCG
CCAGCGCACATGGAGATGAACTAGATCGATCGAGCGGCAGCAATAACAAC
AAGCAGCTGCCGTCGGCCACCGCCCCCACCGCGGAGGCAGTACCCAGATG
GTCGTCCTCGCTCGAAGGCCATGCCAGCTCTGCTAGTGCGCCTGCAACGG
TGGGATTGGTTTCGCCTGAAACGGCAAGGCTGACCTCACCTCAACAGCAC
CACAACGCCACAAATACCCATCACAGCAACAACAGCAACAGATCACGTCG
GAACGATTCTGGCCGTGGCGGAAATACAGCCGGCGCCTTTTCCATACCCC
GCAGCGACTCCCTAGGAAACGCCCAGTCTCAGCCTAGGGCTCAAACCACC
AGCGCCTTGAGGCGTAGCAGCAGTGCCACCAGCGAGACGTTCAGCAACGG
TGGTCGCGGCTTCAACGGGGGCAATGGCACCAGTAGCGCAGGAGCTTCCG
TCGCGTCGAGCAACGATCCCAATGTGCTGAAGGTCGAGATTAATCGACTG
CAAGCGGCGCTCATGAACGGCTTCAAGGGCGGGGATCGGTTCGTAGGCGG
CGCGCAGTTCAAGGCCTCAAGTTCAAGCCGAAATGGTCAACGCGGCGGTG
GCGGCGGTGGGGTGGGGGGAAAATCGTGCGGCGGGTGTCTGCAGGTTTGT
GCGTTAGACACGGAGCTTGGATTATGCGGAATAGATCGTAGCTGAACGTG
GCGTAGGCATGTTGGTACACTCTACGGGGCTTCGGAGTACCCCAAGCGAA
TACCGCCACTTGTTTTTGTTTTCAGGACGGGGGGTGGATGGAGAGGGGCT
GCTGCTCCCTCGGAGGGGGGTATTGAGCCACTAAGCGACGTCCACAATGT
CCGGTCAACCCAGTGGTGTAGCGGCGGGGAGGAAGGCGTTTCCAGCCTTG
CACGAACGCCCGATGCTTAGATTCTAGCACACTCGGCCTCTCGAAGTAAA
CGCGAACGGCATCGAACGACACCTAATTGCAGGTGCGAGAGGCGCTGCGT
CGGTCCCGCGTAGAGTGCCGGGACCTGAGGGGGTCGCTCTTCCGGGCCGA
GCACGTGATCAAGCAGCTGACTCTGACCAAGGCCGCCCGACGGCGAGGGG
CGAACCAAAGTGGTAGCTACACGGCTCACCAACAGTCATCGTCGTCATCA
TTATTTGCAGGAGGAGCAACAACAGCAGCAATAACAGCAGCATCTGAGGA
GCAGGAACGGAGGTTGGTTCCCCAAATGCTCACGACCAGTGGGTGTTGTG
GTGGCGAACGAGGGGGAACTTGTTCAAGCAGCCGGAACGACGGGCATGCC
GGTGAAGCGCCGTCTCGAGAAAATCTGTTGTCCAGGGTGCAGGAACTGGA
GCGGGAGCTTCGCCTAGCCGATTTTCGGGACGCAAGGAGCATGGGGGCGG
CCGTAGGAGCAGAACATATTCGTGCACGGAAGAACGTCATGGACGATGAG
GTGTCGGAGATATATCTCTCGTACCGTGGTACTGTTCGTCGCCTAGAATC
GTGCTCAAAACAGCTTTTCGCGCAAGAATCAAGCACTTAGCAGTTAGTTG
CTGATTTGTTTCGCCCTGAGCAACAACGGCAATAGCCCGATCATGGACAA
TCCGGGCGCCTGATTCGAACCTTGTGGTTTCCAAAACATTACTCCGGCGG
GTACATTATTACAAAGAAACCCGACCGGTTTCGACAACCGGCACGCTTTT
ACCCCAACGGCAGGTGCACCTTAACAAAAGCGACAGCGACCACGACGCTA
ATGTTTCGTCATTGAAAAAATCATCTTCGGCATCGTTGAGAGGGGCACTG
GGGAAAACGAGTGGAGCTGGCAGCAGTAGAATTAGCAGCAGCGTGTGGGA
TTGGGAGGGTCTGCCTCCGTGCTCCAAGTGCTCCGCGTTGAACGATCGGC
TGCTGGGCGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8102:1..2761-

>mRNA_E_fasciculatus_S2_contig8102.16264.1 ID=mRNA_E_fasciculatus_S2_contig8102.16264.1|Name=mRNA_E_fasciculatus_S2_contig8102.16264.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1674bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8102:1..2761- (Ectocarpus fasciculatus EfasUO2)
ATGTTTACAACCCAGCCCGTTTCTCCGCTGCCGCCGTTGAACAGCGATGA
TTCCCCTCCGCAGCACCAAAGGGGTTCGTTCAACTCCTTTGCGACCTTCG
GGGGTGCCTCTCCAGTGCCGGCAAACCGCCTTTTCGAGGCGAAAGCGGTA
AACCTTGTACCCAGGCCGAAGACGAGCACGTCTTATACCCGCCAGCTGTC
GTCGTCCTCCTCTCTCGGCCTGTTTCCGGCCTCTTCGTCGCCTTCACCCT
CCTCGCCAAATGGGGACCAGCCGGCGCCGAGGCACGACAAGGACATGGCA
AGACCGAGAGCGTTTTCGGCAAGTGAGCAGCACCATCAACAACAGCCGAA
ACACGTGAATAGCGCCAGCGCACATGGAGATGAACTAGATCGATCGAGCG
GCAGCAATAACAACAAGCAGCTGCCGTCGGCCACCGCCCCCACCGCGGAG
GCAGTACCCAGATGGTCGTCCTCGCTCGAAGGCCATGCCAGCTCTGCTAG
TGCGCCTGCAACGGTGGGATTGGTTTCGCCTGAAACGGCAAGGCTGACCT
CACCTCAACAGCACCACAACGCCACAAATACCCATCACAGCAACAACAGC
AACAGATCACGTCGGAACGATTCTGGCCGTGGCGGAAATACAGCCGGCGC
CTTTTCCATACCCCGCAGCGACTCCCTAGGAAACGCCCAGTCTCAGCCTA
GGGCTCAAACCACCAGCGCCTTGAGGCGTAGCAGCAGTGCCACCAGCGAG
ACGTTCAGCAACGGTGGTCGCGGCTTCAACGGGGGCAATGGCACCAGTAG
CGCAGGAGCTTCCGTCGCGTCGAGCAACGATCCCAATGTGCTGAAGGTCG
AGATTAATCGACTGCAAGCGGCGCTCATGAACGGCTTCAAGGGCGGGGAT
CGGTTCGTAGGCGGCGCGCAGTTCAAGGCCTCAAGTTCAAGCCGAAATGG
TCAACGCGGCGGTGGCGGCGGTGGGGTGGGGGGAAAATCGTGCGGCGGGT
GTCTGCAGGTGCGAGAGGCGCTGCGTCGGTCCCGCGTAGAGTGCCGGGAC
CTGAGGGGGTCGCTCTTCCGGGCCGAGCACGTGATCAAGCAGCTGACTCT
GACCAAGGCCGCCCGACGGCGAGGGGCGAACCAAAGTGGTAGCTACACGG
CTCACCAACAGTCATCGTCGTCATCATTATTTGCAGGAGGAGCAACAACA
GCAGCAATAACAGCAGCATCTGAGGAGCAGGAACGGAGGTTGGTTCCCCA
AATGCTCACGACCAGTGGGTGTTGTGGTGGCGAACGAGGGGGAACTTGTT
CAAGCAGCCGGAACGACGGGCATGCCGGTGAAGCGCCGTCTCGAGAAAAT
CTGTTGTCCAGGGTGCAGGAACTGGAGCGGGAGCTTCGCCTAGCCGATTT
TCGGGACGCAAGGAGCATGGGGGCGGCCGTAGGAGCAGAACATATTCGTG
CACGGAAGAACGTCATGGACGATGAGGTGCACCTTAACAAAAGCGACAGC
GACCACGACGCTAATGTTTCGTCATTGAAAAAATCATCTTCGGCATCGTT
GAGAGGGGCACTGGGGAAAACGAGTGGAGCTGGCAGCAGTAGAATTAGCA
GCAGCGTGTGGGATTGGGAGGGTCTGCCTCCGTGCTCCAAGTGCTCCGCG
TTGAACGATCGGCTGCTGGGCGAG
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