mRNA_E_fasciculatus_S2_contig81.16258.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig81.16258.1
Unique NamemRNA_E_fasciculatus_S2_contig81.16258.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Uncharacterized (protein n=3 Tax=Eukaryota TaxID=2759 RepID=D8LBC1_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 2.790e-132
Identity = 193/194 (99.48%), Postives = 194/194 (100.00%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD 582
            MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDE+ELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD
Sbjct:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDEKELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Uncharacterized (protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ7_9STRA)

HSP 1 Score: 326 bits (836), Expect = 5.060e-112
Identity = 160/186 (86.02%), Postives = 179/186 (96.24%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAG 558
            MPK+G++RNYRKT+KTPRRP+EKERLD ELKLCGEYGLRCKREIWRVQ+ALAKIRKAAR+LLTLD KDPKRLFEGPALLRRM+RFGLL E+E+ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHIRVGKQLVN+P F VR+DSEKHIDF++TSP+GQGRPGRVARKRAASKAA G
Sbjct:    1 MPKIGMYRNYRKTYKTPRRPFEKERLDQELKLCGEYGLRCKREIWRVQYALAKIRKAARELLTLDAKDPKRLFEGPALLRRMARFGLLTEEEKELDFVLQLSTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHIRVGKQLVNIPSFTVRVDSEKHIDFALTSPFGQGRPGRVARKRAASKAAGG 186
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9P4_9STRA)

HSP 1 Score: 326 bits (835), Expect = 7.440e-112
Identity = 167/194 (86.08%), Postives = 181/194 (93.30%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD 582
            MPK+   RN+RKT KTPRRPYEKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR+LLTL+ KDP+RLFEGPALLRRMSR+GLL +DE+ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQLVNVP F+VRMDSEKHIDF+ITSPYG GRPGRVARKRAA KAAAGGDD E+SD
Sbjct:    1 MPKISARRNHRKTSKTPRRPYEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARELLTLEPKDPRRLFEGPALLRRMSRYGLLMDDEKELDFVLQLSTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRMDSEKHIDFAITSPYGLGRPGRVARKRAAQKAAAGGDD-EDSD 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagophyceae TaxID=35675 RepID=A0A7S0TCI6_9STRA)

HSP 1 Score: 317 bits (812), Expect = 2.550e-108
Identity = 164/196 (83.67%), Postives = 179/196 (91.33%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAA--GGDDGEESD 582
            MPKV   RNY KT KTPRRP+EKER+D ELKLCGEYGLRCKRE+WRVQFALAKIRKAAR+LLTLD KDPKRLFEG ALLRRM+R+GLL E E +LD +LQ+TT+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQ+VNVP FMVR+DSEKHIDF+ITSPYGQGRPGRVARKRAA+KAAA  GGD GEESD
Sbjct:    1 MPKVRFLRNYSKTSKTPRRPFEKERIDGELKLCGEYGLRCKRELWRVQFALAKIRKAARELLTLDPKDPKRLFEGAALLRRMARYGLLDETELDLDAILQMTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQVVNVPSFMVRVDSEKHIDFAITSPYGQGRPGRVARKRAAAKAAADGGGDAGEESD 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Hypothetical (protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1BHT3_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.610e-103
Identity = 156/191 (81.68%), Postives = 171/191 (89.53%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGE 573
            MP   +HRNYRKT KTPRRPYEKERLD+ELKL GEYGLRCKRE+WRVQFALAK+RKAAR LLTLD KDPKR+FEG ALLRRMSR+GLL EDE ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHIRVG QLVNVP F VR  SEKH+DF+  SPYGQG PGRVARKRAA++AAAGGD+ E
Sbjct:    1 MPTNAMHRNYRKTSKTPRRPYEKERLDAELKLVGEYGLRCKREVWRVQFALAKLRKAARTLLTLDPKDPKRVFEGEALLRRMSRYGLLNEDELELDFVLQLSTQKILERRLQTKVFKQGLAKSIHHARVLIRQRHIRVGGQLVNVPSFNVRTSSEKHMDFATNSPYGQGPPGRVARKRAAARAAAGGDEEE 191
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Ribosomal_S4 (domain-containing protein n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R6WW56_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.910e-103
Identity = 148/183 (80.87%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKA 549
            MPK+  HRNYRKT++TP R +EKERLD E+KL GEYGLRCKREIWRVQ+ LAK+RKAARQLLTLD KDPKRLFEGPAL+RR+ R+GLL +DE ELDFVLQ+ T+K+LERRLQTKVFKQGLAKSIHHAR LIK RHIRVG+QLV+VP FMVR+DSEKHIDFS+TSPYGQGRPGRVARKRAA +A
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQEMKLLGEYGLRCKREIWRVQYTLAKLRKAARQLLTLDPKDPKRLFEGPALMRRLKRYGLLADDENELDFVLQMNTQKLLERRLQTKVFKQGLAKSIHHARTLIKQRHIRVGRQLVDVPSFMVRLDSEKHIDFSVTSPYGQGRPGRVARKRAAQRA 183
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Ribosomal_S4 (domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JV42_9STRA)

HSP 1 Score: 305 bits (781), Expect = 2.340e-103
Identity = 151/187 (80.75%), Postives = 170/187 (90.91%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGG 561
            MPK+  HRNYRKT++TP R +EKERLD ELKL GEYGLRCKREIWRVQ+AL+K+RKAAR+LLTLD KDPKRLFEG ALLRR+ RFG+L EDE ELDFVL+L  +K+LERRLQTKVFKQ LAKSIHHARVLIK RHIRVGKQLV+VP F+VRMDSEKHIDF++TSPYGQGRPGRVAR+RAA +AAAGG
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQELKLLGEYGLRCKREIWRVQYALSKLRKAARELLTLDPKDPKRLFEGSALLRRLKRFGVLSEDENELDFVLRLNVQKLLERRLQTKVFKQNLAKSIHHARVLIKQRHIRVGKQLVDVPSFLVRMDSEKHIDFAVTSPYGQGRPGRVARRRAAQRAAAGG 187
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Uncharacterized (protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0SZN6_THAOC)

HSP 1 Score: 301 bits (771), Expect = 3.650e-102
Identity = 155/189 (82.01%), Postives = 167/189 (88.36%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDD 567
            MP    HRNYRKT+KTPRRPYEKERLD+ELKL GEYGLRCKREIWRVQ+ALAK+RKAAR LLTLD KDPKR+FEG ALLRRMSR+GLL +DE ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHI VG QLVNVP F VR  SEKHID S  SPYGQG PGRVA+KRAA+KAAAG DD
Sbjct:    1 MPTNAQHRNYRKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRVQYALAKLRKAARVLLTLDPKDPKRIFEGAALLRRMSRYGLLADDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKHIDISANSPYGQGAPGRVAKKRAAAKAAAGEDD 189
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVT2_9STRA)

HSP 1 Score: 301 bits (771), Expect = 4.190e-102
Identity = 158/195 (81.03%), Postives = 170/195 (87.18%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQ-GRPGRVARKRAASKAAAGGDDGEESD 582
            MP +   RNY  T KTPRR YEKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR LLTLD KDPKRLFEGPALLR+M R+GLL E+E+ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQLVNVP F+VR+DSEKHI F+ TSPY   GR GRVARKRAA+KAA  GD+GEE D
Sbjct:    1 MPSIAFKRNYSSTSKTPRRAYEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARDLLTLDVKDPKRLFEGPALLRKMVRYGLLSEEEKELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRVDSEKHIQFATTSPYSDVGRQGRVARKRAAAKAA--GDEGEEDD 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Match: RS9, (ribosomal protein 9 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1H2_THAPS)

HSP 1 Score: 301 bits (770), Expect = 5.180e-102
Identity = 155/189 (82.01%), Postives = 166/189 (87.83%), Query Frame = 1 
Query:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDD 567
            MP    HRNYRKT+KTPRRPYEKERLD+ELKL GEYGLRCKREIWR Q+ALAK+RKAAR LLTLD KDPKR+FEG ALLRRMSR+GLL EDE ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHI VG QLVNVP F VR  SEKHID S  SPYGQG PGRVA+KRAA+KAAAG DD
Sbjct:    1 MPTNAQHRNYRKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRCQYALAKLRKAARTLLTLDPKDPKRIFEGTALLRRMSRYGLLAEDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKHIDISADSPYGQGAPGRVAKKRAAAKAAAGDDD 189
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig81.16258.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.790e-13299.48protein n=3 Tax=Eukaryota TaxID=2759 RepID=D8LBC1_... [more]
Uncharacterized5.060e-11286.02protein n=2 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical7.440e-11286.08protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.550e-10883.67protein n=2 Tax=Pelagophyceae TaxID=35675 RepID=A0... [more]
Hypothetical1.610e-10381.68protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=A... [more]
Ribosomal_S41.910e-10380.87domain-containing protein n=6 Tax=Saprolegniaceae ... [more]
Ribosomal_S42.340e-10380.75domain-containing protein n=4 Tax=Peronosporaceae ... [more]
Uncharacterized3.650e-10282.01protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K... [more]
Hypothetical4.190e-10281.03protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
RS9,5.180e-10282.01ribosomal protein 9 n=1 Tax=Thalassiosira pseudona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig81contigE_fasciculatus_S2_contig81:39929..44202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score384.4
Seed ortholog evalue3.1e-104
Seed eggNOG ortholog2880.D8LBC1
Preferred nameRPS9
Model size585
KEGG koko:K02997,ko:K17675
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006417,GO:0006450,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071944,GO:0080090,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1990904,GO:2000112
Exons5
EggNOG free text desc.positive regulation of translational fidelity
EggNOG OGsCOG0522@1,KOG3301@2759
Ec32 ortholog descriptionRibosomal protein S4/S9, eukaryotic/archaeal
Ec32 orthologEc-27_004470.1
EC3.6.4.13
Cds size585
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842470.7100773-CDS-E_fasciculatus_S2_contig81:39928..401031696842470.7100773-CDS-E_fasciculatus_S2_contig81:39928..40103Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig81 39929..40103 -
1696842470.7248654-CDS-E_fasciculatus_S2_contig81:40533..406011696842470.7248654-CDS-E_fasciculatus_S2_contig81:40533..40601Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig81 40534..40601 -
1696842470.7373939-CDS-E_fasciculatus_S2_contig81:41392..415661696842470.7373939-CDS-E_fasciculatus_S2_contig81:41392..41566Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig81 41393..41566 -
1696842470.7504244-CDS-E_fasciculatus_S2_contig81:42652..427921696842470.7504244-CDS-E_fasciculatus_S2_contig81:42652..42792Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig81 42653..42792 -
1696842470.7598138-CDS-E_fasciculatus_S2_contig81:44174..442021696842470.7598138-CDS-E_fasciculatus_S2_contig81:44174..44202Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig81 44175..44202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig81.16258.1prot_E_fasciculatus_S2_contig81.16258.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig81 39929..44202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig81.16258.1

>prot_E_fasciculatus_S2_contig81.16258.1 ID=prot_E_fasciculatus_S2_contig81.16258.1|Name=mRNA_E_fasciculatus_S2_contig81.16258.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFA
LAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDERELDFVLQ
LTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMV
RMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD*
back to top

mRNA from alignment at E_fasciculatus_S2_contig81:39929..44202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig81.16258.1 ID=mRNA_E_fasciculatus_S2_contig81.16258.1|Name=mRNA_E_fasciculatus_S2_contig81.16258.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4274bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig81:39929..44202- (Ectocarpus fasciculatus EfasUO2)
ATGCCGAAGGTCGGCATCCACCGGAACTGTGAGTCGCTTGGCGCAAACTT
TAGATTTTGTATCCTGCGTGAACCTTTTGCGGCGACAAAACGACCCTTTT
GAAAGGGACGTGTGTGGGTGCTCGTTTCTTGGCCAGAGAGAGCAAGAGGA
GAGAAAAGGCAGCGAGGACAGCCGGGAAACGCTTGCCGCCCATCGAAACT
CTTGCTTTGTGTACCATGCAGGGTCAGACAAGTGTTGCTAGTGTGAAGAT
AGCTCAGTTGTCGAGGCAGGCCATGCCCAGGGGTGCACGTACGAAAGGGT
TGTGTAGGGTGTTGTCGGCCATATCTCGCTGCCGCCGCTCTTCAGAGGAC
AGGCTGCAACCATCTCTTAGCACCATGAGAAACACTGCGTGCGCGTTGTA
AAAGGTGCAGTCGTGGTATGTACCCTGGCTGGGATGCTTCGTGTGCAGCA
CATGCTGCAACTTTGCTCCACCAGCTTCGTCGCAAACTGCATTCGTAAAG
CAATTGTTTGTACTGCTGCAATAGGTAGAAAGAGGAAACGCTGTGTGGGC
GCTCCCCCTCGCCTCTAGACTACTGCTGTAAAATACAGTAGCAGAGAGGT
CTGTCTGTGTCCTCAGCAGTCACTGAACATATCTCTTGTGGCAAGCGGGA
GATCGTTCATCTCATGTCGGCAGTCACAGGCCGGCCGAAGGCATGGGCCC
GGCGGCATTATCCCTATCGGCACTTGCAGCAATTTGTGTTGAGCTTGTGG
ATCCCTCAACTCTCCCATGCACCAGCAGTGTTCCTCGAGGCCGTAAACGA
ATACAACCCTCGGTAGACGATTGTAGCACTGACCGCGACAGCAGTTAGCT
TTGAGAAAAAGGGTCACAGCAGTCCACTGGTCGGGTTGGCGTAGATTGTC
CAGAGTGGACGAAAGGGATGTGGGTAGAAGTTGCCTTAGGCGCACCTGCG
TGTCATACTGCTGTTGTCAGTCTAAAGTCAAAGGCAGTTATAGCTCAGTG
CTGCTGCGCACGAAAATTGCTATGAACTTTAATGTAGACGCCGCGGTGTG
ATGCAGACAGAGGTGATAGACTTGCTGCTGGCCCATGAACCGCATGTGTA
CGCACATGACCAACGAACTAAAGTCCCGACCTGAGGAGCCGTCAGCTCGC
GGGCTGCTGGTTTCTTGAAGACTACAATCGTGGAATCGCCCCATTTTCCG
AACACTAGAGATATCTTCATGTGTTTGGGCTTATAGGGCGACGATACGAG
TGAACGACCCCACTCCGCAGGCATCCGTGTTCACCCACTGCCGAGAAGAA
GTCCACCCTTCTTACGCATAGTCACTGATGCGGCTATACCCTCCACTCCC
CTTCCGGCATCTCGTGTGATGCACCGCGTTGTGTCGCTTTCCTTACCTCG
TCGTGAGCAGACCGGAAGACCTTCAAGACCCCCAGGCGGCCGTATGAGAA
GGAACGCCTCGACTCGGAGCTCAAGCTCTGCGGCGAGTACGGCCTCCGAT
GCAAGCGCGAGATCTGGCGTGTCCAGTTCGCGTTGGCCAAGATCCGTAAG
GTGGGTTCAAGGGCTGGGGCAGCACGCGTGCAGTAGGGAAACTGGAGGAG
TGAGAAGCAGCGCGACCGGACGAAGAACGATTGGTTTTGTGGCGTTCTCA
AATCAAAGTGCCAGTGGCTTGCGTCTCTCGCTGGTCGGTTGTGGTGTGCT
GATGGTTGCCCGGTGTCTGAATCTTTTGGTTGTGCTACGTTTTGGCGCCC
GGCAACCAGAGAGGTGGCTGCTGCTTGTGGCACAGTCGGTATTTCTCCCG
AGCGTGTAGGCTACACGATGTTCGAGGGGACTGTGGCGGACTGACTGCTG
TGGACGGGTTGGGTTGGGTCGTAGTTCTCTTTTTAAGACAAGAAGTATGT
AATGAATGTACATCGAGTGCCTAGAACCCTGCGTTTTGCTGAGAGTTGGC
AGCCCACGCATGTCGTTGCGAGTGCAAAAGGAGGGTACTGAGCTGGTTCG
GTTGCATTTCCCGCCCGTTGTTAAGAACAGCGTCGTGGCCAGTCGGCCAT
ATGAAAAAAGAACCTCGAATTTTGAGAATCTTCGCGCGCAAGGTCCCGCC
CACAGGAGTATGGATTTGCAGATATCATTTGAAGACAAAAAGGGGCCACT
TTAAGAAACAGTTGAACCAACAAATGGGGGAATCGTAGTAAGGCGGGGGT
GCGCTAGCTTCATGTTCAACGTGCAACATACCTGCGTCCCGTTGGATTGA
AGCTAGCAGGCTTATATTGGCAGTGTCATTCATACGTTCAACCAAGGCCG
AGGTAGCCTTTTCATACCACGCTTTCCAATGCTGGTGAACGGTTTCGCGA
GCGCGTGGACGAGCAAGGCAATGCCCCACGCCGCCAGCATTAATGCATTT
TTACACCGCAAATGTTTCGTCTCGCGACAGAGAGAAAGCGAGTCAACTCG
AGATGAACTGCTGCACATCCCACTCGTAGGATTTCGTACTCCTCTCAGAT
CGTGTCAGGCGGGGAAGTGATTGTGTTGACGAACGATACGATACTAACTG
GCACCTCCCTTTTCTCCTCCTCTTATGGCCATGCGTCTTGTGTGATGGTT
TACGTCCTGCTCGTGCTCCTCCCGCCGCTACTGTAGGCGGCGCGTCAGCT
GCTGACCCTCGACACCAAGGACCCCAAGCGCCTGTTCGAGGGCCCCGCCC
TGCTGCGCCGCATGTCCCGGTTCGGTCTCCTCGGCGAGGACGAGAGGGAA
CTCGACTTCGTGCTTCAGCTCACCACCGAGAAGATGCTCGAGAGGAGGCT
TCAGACCAAGGTATGTTGTCGCTGTATGACGCTTGTTTTTTTGGTGGTCG
AGTTGTTGTGTTCCGTGCCGTGGTGTTGCTTATCTATCAAACGGTCGTGT
GTGTATGTTGTATCGCTGGCGTGTTGGGCAGTGTGCGCTAGCGGTTGTGT
CTTGGATGTTGTATCGGATTGTGGTGGTTGTTTGGTTGCACCCAGTGTGT
GCGAGAATGTTTGGCCACGGCAGCTTCCTTTGGCTGCGCTTGTGCACGCT
GTGCCGTGGCTACATACCCGTTTGAAGTTTAGGGCGGTGGAACCAAGGTG
GCCTGCTGCCAGATACGCGTGGCTCTTATCTTCATGAGAACTTGAGACCA
TGATGAGGATGCCGTTTGTCGATAAAACCCAACAAGCGCAAAGGTTCATA
GTCGTTCTGGTGTATTACAAGACCATACATCGGTTGAGCTCTGCCTGTAT
ACATGTCGTACGGTGTTTGTCACGGCCTTGGCGCTGTTGTCTGACGGTAG
ACACGTTCGCGTTGTTAATCACTCTGTCAATCCGCGTGTGATGATCGATT
CCACGTTAGCGGGTCGACCGACCACTTCATGATAATCCGTAGTCCACTGC
AGGCACACTGCCAGTTGTGTTTGTCTTTTGGTCACTGTGTTCCGTAGTTG
GCGAAAGGTTGCTGGTACGCAGGTCGTGTGACTTGCAAACAGGTTTTCCT
GCCTCTTGCTTGCTAGGCCGGCTGGCACTTGGATGTCCTTCGCATATCGT
TGGTTAAGTGACGTCTTGGCCGATTGTCGGTCGCTCTACGTAATTTCTCA
GGTATTCAAGCAGGGTCTGGCCAAGTCTATCCACCACGCCCGTGTGCTGA
TCAAGCACCGCCACATCCGGTGAGTCCCAAATGGTTAAGTTGTTGCGTGC
ACTGGTAAATGTTTGGACTGTAAACGGTACAGCCGGTGACTGCCCGGTCT
TGTGGCGCCCGGTCCTGCGCCTCTCCCAGTTTTTTCAAGCAAGCTACCCG
AACACCAATATCGTGTCTTGTCCTTCAACACCAAAAAAGGGGTTTACTCG
AATGCCTTGGAGACGTTGGCTGTTGCTCGAGGAATTAAGTCGTCACGTGT
TCCAAGCCTGTCGAATTGTTGCAGTCGTGGGCAATACCTTGCAACGAGGG
GGGATAGCGCGTGCCACAACGCTTGTGCTTCTTGAACTTGACCAACTTGT
TACAAGTGTACTTCCGCTGCCGCAATACGGAATGCCCCATTGTCATCCAC
ACCTCTCACATTTCTCCCCTTTCCCCGCGATGATGCTTGTTCCCAACAGC
GTGGGCAAGCAGCTCGTGAACGTGCCCCAGTTCATGGTCCGCATGGACTC
CGAGAAGCACATCGACTTCTCCATCACCTCGCCCTACGGCCAGGGACGGC
CTGGACGTGTCGCCCGCAAGCGCGCGGCCAGCAAGGCCGCTGCCGGCGGC
GACGACGGCGAGGAGTCGGACTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig81:39929..44202-

>mRNA_E_fasciculatus_S2_contig81.16258.1 ID=mRNA_E_fasciculatus_S2_contig81.16258.1|Name=mRNA_E_fasciculatus_S2_contig81.16258.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig81:39929..44202- (Ectocarpus fasciculatus EfasUO2)
ATGCCGAAGGTCGGCATCCACCGGAACTACCGGAAGACCTTCAAGACCCC
CAGGCGGCCGTATGAGAAGGAACGCCTCGACTCGGAGCTCAAGCTCTGCG
GCGAGTACGGCCTCCGATGCAAGCGCGAGATCTGGCGTGTCCAGTTCGCG
TTGGCCAAGATCCGTAAGGCGGCGCGTCAGCTGCTGACCCTCGACACCAA
GGACCCCAAGCGCCTGTTCGAGGGCCCCGCCCTGCTGCGCCGCATGTCCC
GGTTCGGTCTCCTCGGCGAGGACGAGAGGGAACTCGACTTCGTGCTTCAG
CTCACCACCGAGAAGATGCTCGAGAGGAGGCTTCAGACCAAGGTATTCAA
GCAGGGTCTGGCCAAGTCTATCCACCACGCCCGTGTGCTGATCAAGCACC
GCCACATCCGCGTGGGCAAGCAGCTCGTGAACGTGCCCCAGTTCATGGTC
CGCATGGACTCCGAGAAGCACATCGACTTCTCCATCACCTCGCCCTACGG
CCAGGGACGGCCTGGACGTGTCGCCCGCAAGCGCGCGGCCAGCAAGGCCG
CTGCCGGCGGCGACGACGGCGAGGAGTCGGACTAA
back to top