mRNA_E_fasciculatus_S2_contig81.16255.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.560e-62 Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1
Query: 286 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 585
MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGG+GGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD
Sbjct: 1 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGTGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Hypothetical (protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.140e-15 Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 328 EEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGT-----GNLPQSVPLPQMIDLLVDLWEAEGL 579
+E P+FVN+G L+WE R W++ + + + A+ +DVDE+ID +FS R + P++VPLPQM+D+LVDLWEAEGL
Sbjct: 27 QEGADEPQFVNQGFLKWEESRNKWISS-TQESNSKTKTGAKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS03_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.930e-14 Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 352 FVNRGLLRWERERKAWLAGGSGGPVGRRRAR--ARTMDVDEVIDDLFSGR---------GGTGNL-----PQSVPLPQMIDLLVDLWEAEGL 579
FVN GLLRW+ R W +GG G P R A A +DVDEVID LF R G T +L P++VPLPQMID+L DLWEAEGL
Sbjct: 59 FVNNGLLRWQAARSEWCSGG-GSPASRAPASFSAVQLDVDEVIDVLFDPRWRGGPPRTSGSTRSLVPPRFPKNVPLPQMIDVLTDLWEAEGL 149
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Hypothetical (protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWA5_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.610e-14 Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 283 IMSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLA--GGSGGPVGRRRARARTMDVDEVIDDLF---SGRGGTGN-----LPQSVPLPQMIDLLVDLWEAEGL 579
I+ ++ + E+ EE R FVN+GL+RWE R AWL G S R A +DVD++ID LF S G GN P++VPLPQM+D+L DLWEAEGL
Sbjct: 85 IIPDDLKNESKEMTVEE--IRASFVNQGLMRWETARSAWLGERGDSDDTGSSARPTAVPLDVDKIIDVLFYASSREGRAGNAKPEKFPRNVPLPQMVDILQDLWEAEGL 191
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 9.210e-14 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 352 FVNRGLLRWERERKAWLAGGSGGPVGRRRA--------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 585
FVN+GL RWE ER+ W+ G +A+T+D D +ID +F G+G G LP+ V LPQMI+LLVDLWE EGL+D
Sbjct: 93 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGN-GVLPRPVMLPQMINLLVDLWETEGLYD 177
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.520e-13 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 340 ARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRA-----------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 585
+R ++VN GL W R+ W + + G R+ RAR++DVD VI+ +FS G LPQ VPL QMIDLLVD WEA+GL+D
Sbjct: 44 SREEYVNSGLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDA-RLPQPVPLSQMIDLLVDFWEADGLYD 135
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE) HSP 1 Score: 76.6 bits (187), Expect = 5.070e-13 Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 352 FVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGR-----GGTGNLPQSVPLPQMIDLLVDLWEAEGL 579
F+N GLLRWE R WL + + A +DVD +ID +FS R G + PQ VPL QM+D+LVDLWEAEGL
Sbjct: 103 FINEGLLRWEESRATWLKSDTSDSTAKA---AIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.820e-13 Identity = 47/104 (45.19%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 352 FVNRGLLRWERERKAWLAGGS-------GGPVGRRRARARTMDVDEVIDDLFS-------------GRGGTG--------NLPQSVPLPQMIDLLVDLWEAEGL 579
FVN GL RWE ER WL+ S V +++ A +DVDEVID +FS GRGG G + P VPLPQM+D+LVDLWEAEGL
Sbjct: 49 FVNVGLQRWEVERARWLSSASLDETHPTNKSVQQQQRHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.240e-11 Identity = 45/100 (45.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 352 FVNRGLLRWERERKAWLAGGSGG--------PVGRRRARARTMDVDEVIDDLFSGR-----------GGT-----GNLPQSVPLPQMIDLLVDLWEAEGL 579
+VN GLL WE+ RK WL +G G RA A +DVDE+ID +FS R G T G VPLPQM+D+LVDLWEAEGL
Sbjct: 26 YVNTGLLHWEKGRKHWLRKKAGSVGEEDKKEEEGEERA-AINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P464_9ASTR) HSP 1 Score: 70.5 bits (171), Expect = 5.970e-11 Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 283 IMSSEVSARNPELLKEEDTAR--PKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 585
+ +S VS NP L + P+FVN GLL W + R+ W+ G G V R++AR + + D+L G P+ +PLP+M++ LVD+WE EGL+D
Sbjct: 70 LSASSVSMSNPNLDGHYTSGSNPPEFVNHGLLIWNQTRQQWI--GDKGSVLRKKAREPAISWNATYDNLL---GSNKPFPKPIPLPEMVNFLVDVWEEEGLYD 167 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig81.16255.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig81.16255.1 >prot_E_fasciculatus_S2_contig81.16255.1 ID=prot_E_fasciculatus_S2_contig81.16255.1|Name=mRNA_E_fasciculatus_S2_contig81.16255.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRback to top mRNA from alignment at E_fasciculatus_S2_contig81:10403..15766+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig81.16255.1 ID=mRNA_E_fasciculatus_S2_contig81.16255.1|Name=mRNA_E_fasciculatus_S2_contig81.16255.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5364bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig81:10403..15766+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig81:10403..15766+ >mRNA_E_fasciculatus_S2_contig81.16255.1 ID=mRNA_E_fasciculatus_S2_contig81.16255.1|Name=mRNA_E_fasciculatus_S2_contig81.16255.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig81:10403..15766+ (Ectocarpus fasciculatus EfasUO2)back to top |