mRNA_E_fasciculatus_S2_contig8093.16250.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8093.16250.1
Unique NamemRNA_E_fasciculatus_S2_contig8093.16250.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Similar (to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.100e-26
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    7 VVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPA 189
            + GL  RTLRLNPKWTNPSG+WRVGIKRAY LFPKLLVTRVKAERRKDWDKKHLAAE + A
Sbjct:  103 IKGLSGRTLRLNPKWTNPSGEWRVGIKRAYGLFPKLLVTRVKAERRKDWDKKHLAAEAAVA 163
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Tripeptidyl-peptidase (II n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R7G9_SELML)

HSP 1 Score: 81.3 bits (199), Expect = 2.090e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPAVR 195
            G ++G    TLRLN  W NPSGDWRVG K  YELFP+ L TR+K ERRK WDK H  A ++ A+R
Sbjct:  102 GCIIGASGATLRLNESWVNPSGDWRVGCKFVYELFPERLSTRLKRERRKHWDKNHREA-ITDAIR 165
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V402_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 4.470e-15
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPAV 192
            G +V    R+L+LNP W NP+GDW VG K  Y+LF + LVTR++ ERR+ WD++H AA  + A 
Sbjct:  193 GCIVSPSGRSLKLNPAWKNPTGDWHVGCKHVYQLFSRTLVTRMREERRRQWDERHRAAGAAAAA 256
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Subtilisin ((Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HF30_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.610e-15
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    7 VVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEV 180
            +  L  R LRLN  W NPSG+WR+G+KRAYE +PK LVTRVK ER+K W  K   AE+
Sbjct:   62 ITALSGRVLRLNGAWDNPSGEWRLGLKRAYEFYPKPLVTRVKNERKKAWLSKQHTAEL 119
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Tripeptidyl-peptidase (II n=7 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2D5WGI2_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 6.450e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDK 159
            G + GL  RTLRL   W NPSG WR+GIK AYELFP  LV+R+K ER+K+WDK
Sbjct:  117 GTLTGLTGRTLRLGDDWKNPSGKWRLGIKAAYELFPASLVSRLKTERKKEWDK 169
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Peptidase_S8 (domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382GR40_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 5.020e-14
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDK 159
            G + GL  RTL+L   W NP G WRVGIK AYELFP  LV+R+K ER+K+WDK
Sbjct:  107 GTLTGLTGRTLKLGGDWQNPGGKWRVGIKAAYELFPGSLVSRLKRERKKEWDK 159
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Tripeptidyl-peptidase (II n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0PE30_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 AVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKK 162
            +++GL  RTL+L   W N +G WR+GIK AYELFP  LV+R+K+ER+K+WDKK
Sbjct:  104 SLIGLTGRTLKLGSDWDNKNGKWRLGIKAAYELFPSALVSRLKSERKKEWDKK 156
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Tripeptidyl-peptidase (II n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIJ6_CHLSO)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPAV 192
            G + GL    LRLNP WTNPSG+WRVG K AYELFP  L +R++ ER+K W +K   A V+ AV
Sbjct:  190 GCITGLNGNKLRLNPAWTNPSGEWRVGAKAAYELFPAGLKSRLQKERKKRWAEKQRTA-VAQAV 252
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Tripeptidyl-peptidase (II n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T218_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-13
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDK 159
            G + GL  RTL+    W NPSG WR+GIK AYELFP  LV+R+K+ER+KDWDK
Sbjct:  108 GILTGLTGRTLKPVNDWKNPSGKWRLGIKAAYELFPASLVSRLKSERKKDWDK 160
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Match: Tripeptidyl-peptidase (II n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IXE8_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    7 VVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKDWDKK--HLAAE 177
            + GL  RTL L+PKW NPSGD+R+G+KRAYELFP  L++R+K+ERR++++ K  HL  E
Sbjct:  105 IEGLSGRTLILDPKWKNPSGDYRIGLKRAYELFPSELISRLKSERRQNFEVKQAHLIGE 163
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8093.16250.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar1.100e-2685.25to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxI... [more]
Tripeptidyl-peptidase2.090e-1658.46II n=4 Tax=Selaginella moellendorffii TaxID=88036 ... [more]
Hypothetical4.470e-1550.00protein (Fragment) n=1 Tax=Chlamydomonas euryale T... [more]
Subtilisin5.610e-1558.62(Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 ... [more]
Tripeptidyl-peptidase6.450e-1564.15II n=7 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2D... [more]
Peptidase_S85.020e-1462.26domain-containing protein (Fragment) n=1 Tax=marin... [more]
Tripeptidyl-peptidase1.070e-1358.49II n=2 Tax=Verrucomicrobiales bacterium TaxID=2026... [more]
Tripeptidyl-peptidase1.070e-1356.25II n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=... [more]
Tripeptidyl-peptidase1.460e-1362.26II n=1 Tax=Verrucomicrobiales bacterium TaxID=2026... [more]
Tripeptidyl-peptidase2.000e-1357.63II n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8093contigE_fasciculatus_S2_contig8093:692..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.9
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D8LMK5
Preferred nameTPP2
Model size198
KEGG koko:K01280
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0010883,GO:0010884,GO:0016020,GO:0016043,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032879,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0048518,GO:0050789,GO:0051259,GO:0051260,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1905952,GO:1905954,GO:1990904
Exons1
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
EC3.4.14.10
Cds size198
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842469.8125615-CDS-E_fasciculatus_S2_contig8093:691..8891696842469.8125615-CDS-E_fasciculatus_S2_contig8093:691..889Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8093 692..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8093.16250.1prot_E_fasciculatus_S2_contig8093.16250.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8093 692..889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8093.16250.1

>prot_E_fasciculatus_S2_contig8093.16250.1 ID=prot_E_fasciculatus_S2_contig8093.16250.1|Name=mRNA_E_fasciculatus_S2_contig8093.16250.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=66bp
GAVVGLRQRTLRLNPKWTNPSGDWRVGIKRAYELFPKLLVTRVKAERRKD
WDKKHLAAEVSPAVRL
back to top

mRNA from alignment at E_fasciculatus_S2_contig8093:692..889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8093.16250.1 ID=mRNA_E_fasciculatus_S2_contig8093.16250.1|Name=mRNA_E_fasciculatus_S2_contig8093.16250.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8093:692..889+ (Ectocarpus fasciculatus EfasUO2)
GGTGCGGTGGTTGGTTTGCGACAAAGGACCCTCCGCCTCAACCCCAAGTG
GACCAACCCCAGCGGGGACTGGCGCGTGGGCATCAAGCGCGCCTACGAGC
TGTTCCCGAAGCTGCTGGTGACGCGGGTCAAGGCCGAGCGACGCAAGGAC
TGGGACAAGAAGCACCTCGCAGCAGAGGTGAGTCCGGCCGTCCGGCTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8093:692..889+

>mRNA_E_fasciculatus_S2_contig8093.16250.1 ID=mRNA_E_fasciculatus_S2_contig8093.16250.1|Name=mRNA_E_fasciculatus_S2_contig8093.16250.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8093:692..889+ (Ectocarpus fasciculatus EfasUO2)
GGTGCGGTGGTTGGTTTGCGACAAAGGACCCTCCGCCTCAACCCCAAGTG
GACCAACCCCAGCGGGGACTGGCGCGTGGGCATCAAGCGCGCCTACGAGC
TGTTCCCGAAGCTGCTGGTGACGCGGGTCAAGGCCGAGCGACGCAAGGAC
TGGGACAAGAAGCACCTCGCAGCAGAGGTGAGTCCGGCCGTCCGGCTG
back to top