mRNA_E_fasciculatus_S2_contig8092.16249.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8092.16249.1
Unique NamemRNA_E_fasciculatus_S2_contig8092.16249.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8092.16249.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP8_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 5.300e-77
Identity = 162/218 (74.31%), Postives = 175/218 (80.28%), Query Frame = 3 
Query:    3 VSRPAISYMSSTQAPEGYHKPIDVKWVLVGDADSGPIEFEFYTGGVRLDGALDRKASATAAXXXXXXXXXXXX----QGVEGAAMHGLEVAGEHPEAAGA-TAVAPVGGQAGVLPLGPVEAXXXXXXXXXXGTEGVDSRVVVCKPDFIDRVDFADPDGVVFSIDGVETSVVPAEENGLATQSCALLAAEVGPGRHRLKVVPLRRGKPFVAISHVIYPA 641
            VSRPAI YM + +APEGYHKPIDVKWVLVGDADSGPIEFEF+TGGV LD A+D+  + + AXXXXXXXXXXX     QGVEGAA+H               TAVAPVGGQ GVLPLGPVEA          GT+ VDSRVVVCKPDFIDRVDFADP GVVFSIDGVETSVVPAEE+GL T+SC+LLAAEVGPGRHRLKVVPLRRG+PFVAISHVIYPA
Sbjct:  327 VSRPAIDYMMNGRAPEGYHKPIDVKWVLVGDADSGPIEFEFFTGGVPLDKAIDKVTTRSEAXXXXXXXXXXXVATGVQGVEGAAIHXXXXXXXXXXXXXXXTAVAPVGGQVGVLPLGPVEAAAAAALA---GTKVVDSRVVVCKPDFIDRVDFADPGGVVFSIDGVETSVVPAEEDGLMTKSCSLLAAEVGPGRHRLKVVPLRRGEPFVAISHVIYPA 541
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8092.16249.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX3_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 6.810e-27
Identity = 85/200 (42.50%), Postives = 102/200 (51.00%), Query Frame = 3 
Query:   45 PEGYHKPIDVKWVLVGDADSGPIEFEFYTGGVRLDGALDRKASATAAXXXXXXXXXXXXQGVEGAAMHGLEVAGEHPEAAGATAVAPVGGQAGVLPLGPVEAXXXXXXXXXXGTEGVDSRVVVCKPDFIDRVDFADPDGVVFSIDGVET-SVVPAEENGLATQSCALLAAEVGPGRHRLKVVPLRRGKPFVAISHVIYPA 641
            P G+H PID KWVLVGDA +GPIEFEF T G+   G   R+ +                 G E  A          PE+AGA                P E                DSRV VCKPDFIDRV F +  GV FS+DG++  + V   + GL  QSCALL   VG GRH +KV PL+ G+P+VAISHV+YPA
Sbjct:  507 PRGFHHPIDYKWVLVGDAAAGPIEFEFETLGIPPAGRHRRRRAKVEEGEEEDAHTFSSSAGREEPA----------PESAGANEEFSNSAGIDAEKTRPTE-----------DATDFDSRVTVCKPDFIDRVQFNETSGVRFSVDGIQVETTVELVQVGLHVQSCALLDVAVGVGRHTVKVEPLKVGEPYVAISHVLYPA 685
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8092.16249.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB3_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.980e-20
Identity = 80/205 (39.02%), Postives = 97/205 (47.32%), Query Frame = 3 
Query:   36 TQAPEGYHKPIDVKWVLVGDADSGPIEFEFYTGGVRL--DGALDRKASATAAXXXXXXXXXXXXQGVEGAAMHGLEVAGEHPEAAGATAVAPVGGQAGVLPLGPVEAXXXXXXXXXXGTEGVDSRVVVCKPDFIDRVDFADPDGVVFSIDGVETSVVPAEENGLATQ-SCALLAAEVGPGRHRLKVVPLRRGKPFVAISHVIYPA 641
            T  PEG+H PID+K VLVGDA SG IEFEF T GV    +G L  +      XXX          G             E  E AG+                               +   DSRVV+CKPDFI RVDF D   V F +DGV  ++    E G  TQ SC +L  +VG GRH + V PL  G P+VA+SH++YPA
Sbjct:  226 TFPPEGFHHPIDLKLVLVGDAASGAIEFEFETIGVPAGTEGWLSEEXXXXXXXXXDDRAEELV-DGNXXXXXXXXXXXDEKQEEAGSHRA-------------------MQDQLQQMNSMSQDSRVVICKPDFITRVDFTDSTQVTFRVDGV-VAIAEELEQGFMTQGSCVILETDVGVGRHTVSVEPLHSGAPYVAVSHLLYPA 409
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8092.16249.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.300e-7774.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.810e-2742.50protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX3... [more]
Uncharacterized2.980e-2039.02protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB3... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8092contigE_fasciculatus_S2_contig8092:2196..4966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score129.0
Seed ortholog evalue2.5e-27
Seed eggNOG ortholog2880.D7FPX3
Model size2771
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2EABQ@1,2SGK3@2759
Cds size618
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842469.7529147-UTR-E_fasciculatus_S2_contig8092:2195..22211696842469.7529147-UTR-E_fasciculatus_S2_contig8092:2195..2221Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8092 2196..2221 +
1696842469.782877-UTR-E_fasciculatus_S2_contig8092:2839..49661696842469.782877-UTR-E_fasciculatus_S2_contig8092:2839..4966Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8092 2840..4966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842469.7678626-CDS-E_fasciculatus_S2_contig8092:2221..28391696842469.7678626-CDS-E_fasciculatus_S2_contig8092:2221..2839Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8092 2222..2839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8092.16249.1prot_E_fasciculatus_S2_contig8092.16249.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8092 2222..2839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8092.16249.1

>prot_E_fasciculatus_S2_contig8092.16249.1 ID=prot_E_fasciculatus_S2_contig8092.16249.1|Name=mRNA_E_fasciculatus_S2_contig8092.16249.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=206bp
MSSTQAPEGYHKPIDVKWVLVGDADSGPIEFEFYTGGVRLDGALDRKASA
TAAAAVAAVAVATGVQGVEGAAMHGLEVAGEHPEAAGATAVAPVGGQAGV
LPLGPVEAAAAAAAAALAGTEGVDSRVVVCKPDFIDRVDFADPDGVVFSI
DGVETSVVPAEENGLATQSCALLAAEVGPGRHRLKVVPLRRGKPFVAISH
VIYPA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8092:2196..4966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8092.16249.1 ID=mRNA_E_fasciculatus_S2_contig8092.16249.1|Name=mRNA_E_fasciculatus_S2_contig8092.16249.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2771bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8092:2196..4966+ (Ectocarpus fasciculatus EfasUO2)
AGGTCTCACGTCCGGCGATCTCCTATATGAGCAGCACCCAGGCACCCGAA
GGCTATCACAAGCCGATAGACGTAAAGTGGGTACTTGTGGGGGACGCAGA
TTCCGGGCCGATCGAGTTCGAGTTCTACACGGGGGGTGTTCGTTTAGATG
GGGCACTAGATAGAAAGGCCTCGGCGACGGCGGCGGCGGCGGTAGCGGCG
GTGGCGGTGGCGACAGGGGTCCAAGGAGTGGAAGGGGCGGCTATGCATGG
TCTAGAGGTGGCTGGAGAACACCCTGAGGCCGCTGGAGCGACAGCCGTGG
CGCCCGTGGGAGGACAAGCGGGCGTGCTACCGCTAGGACCCGTTGAGGCA
GCGGCGGCAGCGGCGGCAGCGGCGCTTGCCGGGACGGAGGGCGTGGACTC
CCGCGTGGTGGTGTGCAAGCCCGACTTCATCGATCGCGTTGATTTTGCGG
ACCCGGACGGGGTGGTGTTCAGCATCGACGGCGTGGAGACGTCCGTTGTG
CCCGCGGAAGAAAACGGGTTGGCGACCCAGTCGTGCGCGCTGCTCGCGGC
GGAGGTAGGGCCCGGCCGCCACCGGCTGAAGGTTGTGCCGCTCAGGCGAG
GGAAGCCGTTCGTGGCGATTTCTCACGTCATCTATCCGGCGTGAAAATCG
TGTTGTGTTGTACACTGGTTCCGTGGCTTCTGGTTGTATATGTGCAATTA
CGTGTTTCATTTACACATGTCGTCAATTGACAAAACGGGAAGGTTATCGT
TTTTGGTGGTGTTTGTTGGCCTATCGACTGGTGCGTGTAGAGATCGACCG
ACAGGGTTCTGTATTCGTGTTGCTCTTACTTCTCTGGCTCTGATGTTTAG
CTACGGGAAGCTCTCCTGTGCGTGTTATGGCGGCTTGTTTCAATGAATGT
GGTTGCTCAGTTGCAGGAGGTACTTATAGTCAACCTCCTTCGTGTCTCGT
GAATACGTACGTATCGAACAGAACCATTGGTTCCCCCCGACCAAGTCGGA
TCAAATAGAAGCACTCATCCCGTGTCGCATAACGGTCGTGTAGAGGTCGT
AAGCGGGTAGAGAAAAAAAAAAATGAAAAGTAAAGGCCACACGAGGGGAG
AAAAAGAGGTGTGCGTTTGTGTGTGTTGCTCTGCTCATAGTTTATGAACA
TGCGATTGGGGTGTGGTTGATTTGTGCGAGCACTTGCTTGGTGTCACTGC
GAATCGCGGAATACCTTGCACATCCAAGTAAATTAACAAGTAGATTATGT
ACGAAAGGCGACAGGCCGGCAGCGGTATTCTGTTTTGGTGAAGTGCCGGT
TTCGCGTCTGGAGCAACTCTGGAATGATACTCCTTCATCGGAGTTTCTTT
CGGAACAACGCTCCTTAATTCATGGGTTAGGCGTTGGATGCGATCGATCA
GTAGGAGGGGTTTCTTTGAGAGTGTACAGTGGTGCGGTGGTGGGAAACGA
GTGGATTAACTTTCCTCCAGGAGAGCCAAAGAAGGAGGCCTTGGATCGAA
TCGTTTCGTGCGTGTGGTAATTTTTATGAGAGGACGTTCTTGTAGCAGTT
CTCGTGACGATCGACATTGGTCTCGCATAGTTTGGGTGCTTTCGGTGTGT
GCGATAGCCTGCCCGGGCTGAGCGTACAATGTGTCTCCTTGAAAGAAAGC
ATTCGTTTGCGCGCTTGATTTGTTTGGATTGCACGGCTATGTGTGGAGTA
CGGGGCAGTATTGTAGAGAGGTTCAAATTCGCGATTGCGTCGTGAACATC
TATCTTCGTTCATTTCCCCGCGGAGCAGGGTGCACAATGTGCGTTAAAAT
GGTGACCGGGGGGGGGGTTCATTTCGAACAAAAAGCGTTGATCCCTAACA
TAGCGGTTGCAGGGCTGACAGACTGATCAGGCTGCTGACTTATTTTGGGG
GGATCCGCATGGAGGGGAGGGGCGGTAGAGGGGAAACTCTGGAAAAAGAA
GAGGCATGTTACGTACGGCATGGTGGGATGGCAAATGCGAGTTTGTCGAT
GGGCATCTTGTGTCACGAACGAATCAAAGGTGGACTGCTTAAGGAGAGCA
AACGAAATAGCAATGGCGTCGCCTTGTTTGAAGCGCGGTGTGCTGGGTTC
GCTCCAGTTGATGCGAGCAGGAGGTAGCTTTGATCGGGATCGAGCTCGCA
GCATGGCGGCCGTTCAGAGCCTTGTTTGCGACAAGAGTGTCTTTTTGGCG
CGTCCGATTAACAAGTACCTGAGAAATGCCTGTGGATACCCCGTACCAAT
GGGGAACCCCGTAGTACACTGGTTATGCTGGGAGGGGATGCTACTTCACG
GGCGTTGTTCGTTTTCCGGTAGATTGGAGCGTTCGAGGGTACCTCCTGCC
TATCTTGCCTTGATTTCCGTCGTCTCTCTCTCTCTCCTCTATCGTTGGTG
TTCGTTCTTCCATCCCTTTTGACTGGGGTCAATCGTCTGTACCCCGGTTA
GCCTTTCTTTTCCTTCTTTTTCTTTTTGGTAGAAAACATATCGCGCCTGT
GGGAGGCTTTTTCTGGTGTCCAGTTTTTTTTTAGGTGTACCTCATTTGGG
GCAGTTGGCTTGTGACCACGGAAGGCGTCCGCGTCTGTTGGACTATAATA
GTACGGACAGTCGAAGGTACTGAGCAGAGACCGGAACGGTTTTTAATGTG
AAGACAACAACAACAACAGGCGGGGGGGGGGCGTCCGGTGTGCACACTGC
GTCGTTTTCCTCGTCGACTGCAAAGGCGCGATGTTTTCTCTGTTCCCTAA
TAATGTTGAAGGCAAAACACC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8092:2196..4966+

>mRNA_E_fasciculatus_S2_contig8092.16249.1 ID=mRNA_E_fasciculatus_S2_contig8092.16249.1|Name=mRNA_E_fasciculatus_S2_contig8092.16249.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=618bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8092:2196..4966+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCAGCACCCAGGCACCCGAAGGCTATCACAAGCCGATAGACGTAAA
GTGGGTACTTGTGGGGGACGCAGATTCCGGGCCGATCGAGTTCGAGTTCT
ACACGGGGGGTGTTCGTTTAGATGGGGCACTAGATAGAAAGGCCTCGGCG
ACGGCGGCGGCGGCGGTAGCGGCGGTGGCGGTGGCGACAGGGGTCCAAGG
AGTGGAAGGGGCGGCTATGCATGGTCTAGAGGTGGCTGGAGAACACCCTG
AGGCCGCTGGAGCGACAGCCGTGGCGCCCGTGGGAGGACAAGCGGGCGTG
CTACCGCTAGGACCCGTTGAGGCAGCGGCGGCAGCGGCGGCAGCGGCGCT
TGCCGGGACGGAGGGCGTGGACTCCCGCGTGGTGGTGTGCAAGCCCGACT
TCATCGATCGCGTTGATTTTGCGGACCCGGACGGGGTGGTGTTCAGCATC
GACGGCGTGGAGACGTCCGTTGTGCCCGCGGAAGAAAACGGGTTGGCGAC
CCAGTCGTGCGCGCTGCTCGCGGCGGAGGTAGGGCCCGGCCGCCACCGGC
TGAAGGTTGTGCCGCTCAGGCGAGGGAAGCCGTTCGTGGCGATTTCTCAC
GTCATCTATCCGGCGTGA
back to top