mRNA_E_fasciculatus_S2_contig8090.16247.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8090.16247.1
Unique Name	mRNA_E_fasciculatus_S2_contig8090.16247.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 7.590e-35
Identity = 69/100 (69.00%), Postives = 77/100 (77.00%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRLSMPDAGATAKSAPGDVEHADRSGIEE 300
            G  R+SCLNA++VAL ETCDGKSWYTSTKELQLAS+ FC ACRN+QT+HL VD  IPRRLLA ADAPPP     ++ D  A   SA  DVEHAD SGIEE
Sbjct:  130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPA-SEAAVSDTRAPTHSASCDVEHADSSGIEE 228

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BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.480e-31
Identity = 57/74 (77.03%), Postives = 68/74 (91.89%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRL 222
            G +R+SCLNAL++AL+ETC+G+SWYTSTKELQLAS+EFC+ACRNYQT+HL VD  IPRRLLA ADAPPPHP+ L
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELL 180

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BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.920e-30
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRL 222
            G  R  CL ALIVAL+ETCDGKSWYTSTKELQLAS++FC+ACRN QT+HL VD  IPRRLLA+ADAPPPHPKRL
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRL 118

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BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.070e-30
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRL 222
            G   N CL++LIVAL+ETCDG SWYTSTKELQ AS+EFC+ACRNY  MHL VD  IPR LLA ADAPPPHPKRL
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRL 81

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BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.210e-29
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRL 222
            G  R+SCLNA+IVAL+ET DGKSWYTSTKE QLAS+EFC+ACRN+QT+ L VD+  PRRLLA ADAPPPHPKRL
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRL 79

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.030e-28
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRL 222
            G  R+SCL  L VAL+ETCDGKSWYTSTKELQLAS+E CMACR+YQT+HL VD   PRRLLA ADAP PHPKRL
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRL 203

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.680e-28
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRLS 225
            G   N+CLNA+ VAL ET DGKSWYTSTKELQLAS+EFCMACR YQT+HLIVD  IPR LLA AD PP HPKRLS
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLS 104

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.350e-21
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 1

Query:    1 GRNRNSCLNALIVALDETCDGKSWYTSTKELQLASMEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKR 219
            GR  +S    LI+AL+E CDGK WYTSTKELQLAS+EFC+ACR YQ + L VD   PR LLA  DAPPPH KR
Sbjct:   11 GRRCSSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKR 83

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-19
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 2

Query:  203 PRTRSAYLCRTRVPRLRVRRVTWNMPTAAELRKPILAMTDVDCLEFGDAVEGGLEAVAWPRRLKTIELKFGSEFN 427
            P   S   CRTRVPRLR RRV WNMPTA EL+ PI A+ DV  L+FG A EG LE+VAWP+RLK I+  +GS FN
Sbjct:   50 PSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFN 124

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 6.260e-15
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 3

Query:    3 TQSQLVLERPHRCFGRDVRREELVHVDQGATASIHGVLHGV*KLPDDALDS*HSNPTKAAGHCRCATPAPEAPIY 227
            T +QLVLE PH C  R VRREELVH++  A A I G LHGV    D ALDS  ++ T+AA  C C  P PEA ++
Sbjct:   28 THAQLVLEGPHGCLERGVRREELVHINHRAAAGILGALHGVKTPSDVALDSRRTHATQAARCCGCPLPGPEATVW 102

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8090.16247.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	7.590e-35	69.00	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	3.480e-31	77.03	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.920e-30	79.73	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	3.070e-30	75.68	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	3.210e-29	77.03	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.030e-28	77.03	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	2.680e-28	77.33	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.350e-21	65.75	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	2.460e-19	62.67	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	6.260e-15	53.33	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8090	contig	E_fasciculatus_S2_contig8090:5005..5669 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	610
Hectar predicted targeting category	other localisation
Exons	2
Cds size	249

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842469.5237179-UTR-E_fasciculatus_S2_contig8090:5004..5109	1696842469.5237179-UTR-E_fasciculatus_S2_contig8090:5004..5109	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8090 5005..5109 +
1696842469.5426908-UTR-E_fasciculatus_S2_contig8090:5358..5406	1696842469.5426908-UTR-E_fasciculatus_S2_contig8090:5358..5406	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8090 5359..5406 +
1696842469.5550103-UTR-E_fasciculatus_S2_contig8090:5461..5669	1696842469.5550103-UTR-E_fasciculatus_S2_contig8090:5461..5669	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8090 5462..5669 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842469.5335248-CDS-E_fasciculatus_S2_contig8090:5109..5358	1696842469.5335248-CDS-E_fasciculatus_S2_contig8090:5109..5358	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8090 5110..5358 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8090.16247.1	prot_E_fasciculatus_S2_contig8090.16247.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8090 5110..5358 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8090:5005..5669+
coding sequence from alignment at E_fasciculatus_S2_contig8090:5005..5669+

protein sequence of mRNA_E_fasciculatus_S2_contig8090.16247.1

>prot_E_fasciculatus_S2_contig8090.16247.1 ID=prot_E_fasciculatus_S2_contig8090.16247.1|Name=mRNA_E_fasciculatus_S2_contig8090.16247.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
MEFCMACRNYQTMHLIVDTAIPRRLLATADAPPPHPKRLSMPDAGATAKS
APGDVEHADRSGIEETHSRNDGRGLPRVWRCR*

mRNA from alignment at E_fasciculatus_S2_contig8090:5005..5669+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8090.16247.1 ID=mRNA_E_fasciculatus_S2_contig8090.16247.1|Name=mRNA_E_fasciculatus_S2_contig8090.16247.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=665bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8090:5005..5669+ (Ectocarpus fasciculatus EfasUO2)
GGACGCAATCGCAACTCGTGCTTGAACGCCCTCATCGTTGCTTTGGACGA
GACGTGCGACGGGAAGAGTTGGTACACGTCGACCAAGGAGCTACAGCTAG
CATCCATGGAGTTCTGCATGGCGTGTAGAAACTACCAGACGATGCACTTG
ATAGTTGACACAGCAATCCCACGAAGGCTGCTGGCCACTGCAGATGCGCC
ACCCCCGCACCCGAAGCGCCTATCTATGCCGGACGCGGGTGCCACGGCTA
AGAGTGCGCCGGGTGACGTGGAACATGCCGACCGCAGCGGAATTGAGGAA
ACCCATTCTCGCAATGACGGACGTGGACTGCCTAGAGTTTGGCGATGCCG
TTGAAGGTGGCCTTGAGGCTGTGGCATGGCCGCGACGCCTGAAAACGATC
GAGTTTTACCGCTCTTCACTCTATCGAACGCGTGCAATGGCCAGCATCTC
TTCAGAGACTTAAATTCGGTTCCGAGTTCAACCATCCAATCGAAGGTGCC
AGGTCCCCGGCATCGCTGCAGGGGCTAATATTTGGCGGCCGTTCGAATTT
CAACCAACCAGTTGCAGGAGTCATCCTACCGAGTTCACTGCAGAAGCTTG
AGTTCGGTTTCACATTCGACCAGCCCATTGAGGAAGTTGTATGGCCAGAT
TCCCTTCAGAGGCTC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8090:5005..5669+

>mRNA_E_fasciculatus_S2_contig8090.16247.1 ID=mRNA_E_fasciculatus_S2_contig8090.16247.1|Name=mRNA_E_fasciculatus_S2_contig8090.16247.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8090:5005..5669+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGTTCTGCATGGCGTGTAGAAACTACCAGACGATGCACTTGATAGT
TGACACAGCAATCCCACGAAGGCTGCTGGCCACTGCAGATGCGCCACCCC
CGCACCCGAAGCGCCTATCTATGCCGGACGCGGGTGCCACGGCTAAGAGT
GCGCCGGGTGACGTGGAACATGCCGACCGCAGCGGAATTGAGGAAACCCA
TTCTCGCAATGACGGACGTGGACTGCCTAGAGTTTGGCGATGCCGTTGA