mRNA_E_fasciculatus_S2_contig8079.16234.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8079.16234.1
Unique NamemRNA_E_fasciculatus_S2_contig8079.16234.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8079.16234.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G994_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.690e-93
Identity = 183/241 (75.93%), Postives = 190/241 (78.84%), Query Frame = 1 
Query:   19 STHRLTLRVAELEEENKALSEANLRSSQAQGRRHGNEGGDXXXXXXXEESHHAVDGVGVADDPAAPFIAVVVNGAETACLRRVTDTLAGCHGGTNVLCARACPSLPGIVASGGADMSLQVSRLAQGLGGDESNVDSDGSXXXXX-STELHRLKLAAPVLSMDFCPSPAPFCGGSGGGGSAGLLLAGGMDGSSHLVSIDGSHGGDAXXXXXXXXXEETTGKNGVALLASMKNHAKYVVVCRY 738
            S+ +LTLRVA+LEEENKALSEANLR SQ            XXXXXX EE HHA DGVGVADDPAAPF   VV G  TAC+R+V+DTL GCHGGTNVLCARACP LPGIVASGGADMSLQVSRLAQGLG +E N DS GS      STELHRLKLAAPVLSMDFCPS  PF GG       GLLLAGGMDGSSHLVSIDGSHGGDAXXXXXX   EET   NGVALLASMKNHAKYVVVCRY
Sbjct:    7 SSQQLTLRVAKLEEENKALSEANLRLSQGXXXXXXXXXXXXXXXXXGEEGHHA-DGVGVADDPAAPF---VVPGDRTACVRQVSDTLVGCHGGTNVLCARACPGLPGIVASGGADMSLQVSRLAQGLGDNEGNADSGGSASSSSRSTELHRLKLAAPVLSMDFCPSSVPFRGGXXXX-XXGLLLAGGMDGSSHLVSIDGSHGGDAXXXXXX---EET---NGVALLASMKNHAKYVVVCRY 236
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BLAST of mRNA_E_fasciculatus_S2_contig8079.16234.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.730e-8
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:  577 MDGSSHLVSIDGSHGGDAXXXXXXXXXEETTGKNGVALLASMKNHAKYVVVCRY 738
            MDGSSHLVSIDG H    XXXXXXXXX ET   NGVALLASMKNHAKYVVVCR+
Sbjct:    1 MDGSSHLVSIDGGHXXXXXXXXXXXXXXET---NGVALLASMKNHAKYVVVCRW 51
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8079.16234.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.690e-9375.93protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.730e-881.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8079contigE_fasciculatus_S2_contig8079:1009..3064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011380.1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.427197-CDS-E_fasciculatus_S2_contig8079:1008..13711696842468.427197-CDS-E_fasciculatus_S2_contig8079:1008..1371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8079 1009..1371 -
1696842468.4414005-CDS-E_fasciculatus_S2_contig8079:2230..23601696842468.4414005-CDS-E_fasciculatus_S2_contig8079:2230..2360Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8079 2231..2360 -
1696842468.4506247-CDS-E_fasciculatus_S2_contig8079:2427..24531696842468.4506247-CDS-E_fasciculatus_S2_contig8079:2427..2453Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8079 2428..2453 -
1696842468.4597125-CDS-E_fasciculatus_S2_contig8079:2845..30641696842468.4597125-CDS-E_fasciculatus_S2_contig8079:2845..3064Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8079 2846..3064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8079.16234.1prot_E_fasciculatus_S2_contig8079.16234.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8079 1009..3064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8079.16234.1

>prot_E_fasciculatus_S2_contig8079.16234.1 ID=prot_E_fasciculatus_S2_contig8079.16234.1|Name=mRNA_E_fasciculatus_S2_contig8079.16234.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=246bp
MANPRHSTHRLTLRVAELEEENKALSEANLRSSQAQGRRHGNEGGDDNRN
NNGEESHHAVDGVGVADDPAAPFIAVVVNGAETACLRRVTDTLAGCHGGT
NVLCARACPSLPGIVASGGADMSLQVSRLAQGLGGDESNVDSDGSGSGSS
STELHRLKLAAPVLSMDFCPSPAPFCGGSGGGGSAGLLLAGGMDGSSHLV
SIDGSHGGDAGDSSDGGDGEETTGKNGVALLASMKNHAKYVVVCRY
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mRNA from alignment at E_fasciculatus_S2_contig8079:1009..3064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8079.16234.1 ID=mRNA_E_fasciculatus_S2_contig8079.16234.1|Name=mRNA_E_fasciculatus_S2_contig8079.16234.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2056bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8079:1009..3064- (Ectocarpus fasciculatus EfasUO2)
ATGGCCAACCCACGACATTCCACCCACAGGTTGACCCTGAGAGTGGCAGA
GCTGGAGGAGGAGAACAAAGCTCTCTCCGAAGCCAACCTCCGCTCATCCC
AAGCGCAGGGACGCAGACATGGGAACGAAGGAGGAGACGACAATAGGAAC
AACAATGGTGAAGAGAGTCATCATGCCGTGGACGGCGTTGGAGTGGCGGA
TGATCCCGCCGCCCCGTTTGTCATTCCGGGAGACAGGCGAGGAAACGCAG
CATCCCCTCTGCTTGCTTGCCTGCTTGCTTGCTTGCTTGTTTGTTAGCTT
ATTTGCTTGCTTGGGTGCAGGGCAACCGGTTCCATGAGGGGCCCCGAGAG
CAATCACCCCGACGGAGCGGCTCCGTTGGGGATGTGAAATGTTCCACGCT
CATGTGCCCCTATGTACGTTGTACCTGCTGTGACCACGGGAAAGTTTCTC
GAGTTTTGTAGAGACGTCGAAAAAATCGTCTTGCTGGGGACAAGAATCGG
GCGGGGTCCATGGCCCACACGGCACTCGAAGAGCGCAGGAAAAGCAACTA
ACTCACTGTGGAGAATGAAAACGGCATTCTGCTGCCCTGTCGCCTACATG
CCCCATCCGAGATAGCCGTGGTGGTGAACGGTGCAGAGTCTCTTCTTATC
GCAAGCAGCGAATGAAGTCCCCCCAACCACTGCCACCCTCCCCCCTCTCT
CCAGGACGGCGTGTCTGCGCCGGGTGACCGATACCCTGGCGGGGTGCCAC
GGCGGGACTAACGTGCTCTGCGCCCGAGCGTGCCCAAGTCTGCCGGGCAT
CGTGGCGAGCGGCGGGGCGGATATGTCGCTGCAGGTAAGCAGTTGTGAGA
TCCGGGTTAGATGGTTTCGTCTGCCCTACTTCTGCTGATACCTCCTCCGC
GCACCCCCCGCCACCCCCCCTGGCTGACAACGGGGACTTGCAGTTCCGTG
TTACTTCTAAGCAGGAGGTAGGCTCTGTTGTTCCGGCGCGTTGGAATGAG
ATGGTGGGAGTGTTGTTGGAGTTGATTTCTTCGACATCGAAGTGGAAATT
GCACAGATGGGAGAGCTACCTGTGTTTTGGCGTCGGGTTTTCGTTTGTAT
CGAGAAAGGGTTGACCGCGGCAATGGATAAGGAAATAATCCGCAACGCGC
GAATCCCTCCCTCGCCACCACAACCATCCTCCTTCCATTGTATTGATACC
ACCACTGTGTTTTTCGTGTGAGTCCGCATCCTTCGGTTGTGTTATCTCCG
GGAGCATTTTTACCCACCTGATATTCCCAACTTTAAATGTGACCGCCGTG
TTGGGGGCATCGAGGGATGGGAATCGGTCCGTCTTTGCGGGTACGCTCCA
GACAAGGTTGTCTGTACCTGTGTACAACAACATGCGCTTTTGTACGGCAA
TTTCTTAGGACCATGGCGATCGCCATGAGGGTTCAATCGACCCCATTTGT
ATTCATAGGACGACTTTCCATTACTCCGTCGGAACGGGGAGGTCGGGGGG
TATGCGGGAAGAAGCATGACGCCATACCCGGATTGGTTTTTCTGCGATGT
CGTTTCGCGCTGTCCACTGGCTGTGCGCGGTGGCAGAGTGGCGTGTGTGG
TGTACGAAGGCTGCCGTGCACAGCAGGGAACGTGTCGCCGGGTGCATAGT
GCACCAACTAACTGTAGTGTCCGCCACACACTACGCACGGCAGGTATCCC
GTCTAGCGCAAGGCCTTGGTGGCGATGAAAGCAACGTCGATTCCGACGGC
AGCGGCAGCGGCAGCAGTAGCACCGAGCTTCACCGCCTGAAGCTCGCCGC
CCCGGTGCTGTCCATGGACTTCTGCCCGTCACCCGCTCCTTTCTGTGGCG
GCAGCGGCGGCGGCGGTAGTGCAGGCCTACTGCTGGCGGGCGGCATGGAC
GGGAGTAGTCACCTCGTCTCCATCGACGGCAGCCACGGTGGTGATGCCGG
TGACAGTAGCGATGGTGGCGATGGCGAGGAGACGACGGGGAAGAACGGGG
TGGCGCTGTTGGCCTCCATGAAGAACCACGCCAAATACGTCGTCGTGTGC
AGGTAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8079:1009..3064-

>mRNA_E_fasciculatus_S2_contig8079.16234.1 ID=mRNA_E_fasciculatus_S2_contig8079.16234.1|Name=mRNA_E_fasciculatus_S2_contig8079.16234.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=738bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8079:1009..3064- (Ectocarpus fasciculatus EfasUO2)
ATGGCCAACCCACGACATTCCACCCACAGGTTGACCCTGAGAGTGGCAGA
GCTGGAGGAGGAGAACAAAGCTCTCTCCGAAGCCAACCTCCGCTCATCCC
AAGCGCAGGGACGCAGACATGGGAACGAAGGAGGAGACGACAATAGGAAC
AACAATGGTGAAGAGAGTCATCATGCCGTGGACGGCGTTGGAGTGGCGGA
TGATCCCGCCGCCCCGTTTATAGCCGTGGTGGTGAACGGTGCAGAGACGG
CGTGTCTGCGCCGGGTGACCGATACCCTGGCGGGGTGCCACGGCGGGACT
AACGTGCTCTGCGCCCGAGCGTGCCCAAGTCTGCCGGGCATCGTGGCGAG
CGGCGGGGCGGATATGTCGCTGCAGGTATCCCGTCTAGCGCAAGGCCTTG
GTGGCGATGAAAGCAACGTCGATTCCGACGGCAGCGGCAGCGGCAGCAGT
AGCACCGAGCTTCACCGCCTGAAGCTCGCCGCCCCGGTGCTGTCCATGGA
CTTCTGCCCGTCACCCGCTCCTTTCTGTGGCGGCAGCGGCGGCGGCGGTA
GTGCAGGCCTACTGCTGGCGGGCGGCATGGACGGGAGTAGTCACCTCGTC
TCCATCGACGGCAGCCACGGTGGTGATGCCGGTGACAGTAGCGATGGTGG
CGATGGCGAGGAGACGACGGGGAAGAACGGGGTGGCGCTGTTGGCCTCCA
TGAAGAACCACGCCAAATACGTCGTCGTGTGCAGGTAC
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