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Homology
BLAST of mRNA_E_fasciculatus_S2_contig8077.16233.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA4_ECTSI) HSP 1 Score: 215 bits (547), Expect = 1.390e-63 Identity = 125/133 (93.98%), Postives = 128/133 (96.24%), Query Frame = 1
Query: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQKRLFDRVVTAQLDKLEAAARGANAGDQQDVYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGNDXXXXXXXXRTKGGRKS 399
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQ+RLFDRVVTAQLDKLEAAARGANAGDQ ++YKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDG XXXXXXXX KGGRKS
Sbjct: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQ-EIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGXXXXXXXXXXXAKGGRKS 132
BLAST of mRNA_E_fasciculatus_S2_contig8077.16233.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N1_9PHAE) HSP 1 Score: 211 bits (536), Expect = 7.530e-61 Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 1
Query: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQKRLFDRVVTAQLDKLEAAARGANAGDQQDVYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGN 348
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQ+RLFDRVVTAQLDKLEAAARGANAGDQ ++YKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGN
Sbjct: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQ-EIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGN 115
BLAST of mRNA_E_fasciculatus_S2_contig8077.16233.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD5_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.310e-21 Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQKRLFDRVVTAQLDKLEAAARGANAGDQQDVYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDD 342
MSQC CFVGQC+RH LQDHGKR L +K+ KR+++ ++ Q+DK EA NA Q YK K RDRAERRGNKL+ +QQ +A K RLGGHLV+ M+DS D+
Sbjct: 1 MSQCGACFVGQCKRHPLQDHGKRTKDLMAKLPSKSETLKRVYETLLKKQVDKFEAQT---NAVSDQQAYKEKQGKERDRAERRGNKLTREQQEKAKKLRLGGHLVNLMIDSSDE 111
BLAST of mRNA_E_fasciculatus_S2_contig8077.16233.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9Z9_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 9.090e-10 Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQKRLFDRVVTAQLDKLEAAARG-ANAGDQQDVYKASVSKARDRAERRGNKLSSKQQRQA-AKSRLGGHLVHTMLDSDDDGND 351
MS CP C+VGQC++HKLQDHG RE L S + Q+RL++ +V +D L+ + A A Y+ +V K R++A+R+ +K S +Q R+A A L G L+ TML +D D D
Sbjct: 1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSE---LQRRLYESLVQPHVDTLKTTKKATAEAEAGHCRYRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLANDSDFED 116
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8077.16233.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 1.390e-63 | 93.98 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Uncharacterized | 7.530e-61 | 96.55 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Uncharacterized | 3.310e-21 | 52.63 | protein n=1 Tax=Tribonema minus TaxID=303371 RepID... | [more] |
| Uncharacterized | 9.090e-10 | 41.18 | protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 221.1 |
| Seed ortholog evalue | 7.3e-55 |
| Seed eggNOG ortholog | 2880.D8LNA4 |
| Model size | 1449 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| EggNOG OGs | 2CDWX@1,2S5HT@2759 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-04_004580.1 |
| Cds size | 936 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842468.2983785-UTR-E_fasciculatus_S2_contig8077:2006..2519 | 1696842468.2983785-UTR-E_fasciculatus_S2_contig8077:2006..2519 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8077 2007..2519 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842468.3107314-CDS-E_fasciculatus_S2_contig8077:2519..2777 | 1696842468.3107314-CDS-E_fasciculatus_S2_contig8077:2519..2777 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8077 2520..2777 - |
| 1696842468.325519-CDS-E_fasciculatus_S2_contig8077:3380..3863 | 1696842468.325519-CDS-E_fasciculatus_S2_contig8077:3380..3863 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8077 3381..3863 - |
| 1696842468.337944-CDS-E_fasciculatus_S2_contig8077:5120..5315 | 1696842468.337944-CDS-E_fasciculatus_S2_contig8077:5120..5315 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8077 5121..5315 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8077.16233.1 >prot_E_fasciculatus_S2_contig8077.16233.1 ID=prot_E_fasciculatus_S2_contig8077.16233.1|Name=mRNA_E_fasciculatus_S2_contig8077.16233.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=312bp
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQKRLFDRVVTAQL
DKLEAAARGANAGDQQDVYKASVSKARDRAERRGNKLSSKQQRQAAKSRL
GGHLVHTMLDSDDDGNDSDSDDGKGRTKGGRKSKDKKRKSRKDKKRKRRG
SGDEGGSSSGSDSSDSEEESRADRKRRRKDRKKDRRHRGGGSSNGKEKSS
SDRKKDKSERKERKKERKERRRSEKKSKKRRRQEERASGEGGDEDARNGD
DNDVAAAAAAAIADAGKMDIVVTNGGSGGGSSSSSSSSSGSGSDNDAGEG
VGRRDRATDPL* back to topmRNA from alignment at E_fasciculatus_S2_contig8077:2007..5315- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8077.16233.1 ID=mRNA_E_fasciculatus_S2_contig8077.16233.1|Name=mRNA_E_fasciculatus_S2_contig8077.16233.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8077:2007..5315- (Ectocarpus fasciculatus EfasUO2)
ATGTCTCAGTGCCCTCACTGCTTCGTGGGGCAGTGCCAGAGGCACAAGCT
GCAGGACCACGGCAAGCGGGAGCTTCTCCTGAAGTCCAAGATGGTTGACC
CTAAGGCCGCCCAGAAGAGGCTGTTCGACCGCGTCGTGACAGCGCAACTC
GACAAGCTGGAGGCCGCGGCGCGAGGCGCCAACGCAGGAGACCAGGTATG
ACGGCGAAAGGGATGAAGTTCTGATGTCTGTCGGAGTGTGGCGTAGTGCT
TGGGGCTCTGCTCTGCTGCTGCTGTTACTGATTTTACCTGGTAAACTTGT
GCTTCCCCGTTAGGTATTTTTCAGACAGACTTGAGAGTTCTCGAAGCGCC
CACGTCGCCCGCTAGGCTGTTGCTATAAACGCCGGGCTTGTCCTCGGCGC
CCGCGCTCTGCCCTGAGACCGAGGGGCGAACTCGCGGAGTGTACCAACGC
AGGCGTTGCGTTGTCCATCCTCGGCACTACCGCCGCTGCCTTGTGTGCGA
AAGAATGAGAAGTTCTCAAATGCTGCCGTCGAAACTCACACCACGGCACC
CACGCTGTAAATTAGTTCCAACGTCTAGCGTGGGAGTTGACCAGTAGCAG
GCAGGGTGATCGGGGTCGCTACTTAGAGTGAGGCCACTAGGGCTGCGTTT
CGATATACAAATAAAAAATCGTTGAAACATAAATATGTATCTTGCTTGTC
AAGCCTGGAAGGATATTCTAGTGCTCCAGGCAGTCCAGTTGGTAAGGAAA
AGCAGCGCTGCCCGTCTACGGCAACATTCGAGTGATTGCAGGCTCAATTT
GCAAAGCTCGATTACTCCGCAAAACGGCACAAATAACTTCCAGAGAGCCA
AGAAGGAAGCTTCTCGACGAGATCTTTGCAGAGCGACTATTTTCTCTACA
CTGGCAGGAGCTTCTTGATTGTGGAGCAGTTTGGCCGTGAAGTTCGGTCC
AGGGGGTGTGCGATCGATCACTCGCGCTCGTACTCCTATTTAGTTGCATC
GACCTAAAGTCTTTCCCTCGCCTCAAATGCATTACAACGAAGTGTGGTGG
TATGTTTACCCCGAATATATCGTCTCCCCAAAACCAAAAACATTCCACAG
ACCAAAAACACTTGATTAAATAAAACACTCCCCACACGCATATTTATGGT
CGTGAACGAAACAACACACGCGATCGACCCACCGACGCCTTGTGTAACAA
AAATAGACGACGGGTCAGTCAGTATTACGATCTTGCTGCCGATACGCGCT
GGTGCGGGAGCAGCACACCTTGTCCGTTTCACGGATTGTGCGTCGCGATT
CCGCTCTTTCGGATGCCTCGCACAAGCTTCCAATGTTAACCAGAGAAAGA
GGCATTTTTTCTTCTCACCGTCCCTCCCCGCCCCCCCCCCCGTCCTACCC
GTTTTCACTCGTGGGAAAACCCCCCACAATGGTTTTACGTCTTCGAGATG
AGCAGGACGTCTACAAAGCAAGCGTGTCCAAGGCGCGCGACCGCGCCGAG
CGACGGGGGAACAAGCTCTCCAGCAAGCAGCAGCGGCAAGCGGCCAAGTC
TAGGCTGGGCGGGCACCTCGTCCACACCATGCTAGACAGCGACGATGACG
GTAACGACTCCGATTCCGACGACGGGAAAGGGCGAACCAAAGGCGGCAGA
AAGAGCAAGGACAAGAAGCGCAAGAGCCGCAAGGACAAGAAGCGGAAGCG
CAGGGGGAGCGGCGACGAGGGGGGCAGCTCGAGCGGGAGCGATAGCAGCG
ACAGCGAGGAGGAGAGCAGAGCCGACCGGAAGAGGCGCAGGAAGGACAGG
AAAAAGGACCGCCGGCATCGCGGTGGCGGCAGCAGTAACGGCAAGGAAAA
ATCCTCGTCCGACAGGAAGAAGGATAAGTCGGAAAGGAAGGAGAGGAAGA
AGGAGCGCAAGGAGCGACGCCGGAGCGAGAAGAAGGTGAGGCGGGACTGA
GGGTGCCAACAAGCAGCGGTCCGACAGTTATGGGGCCTGTGGCAGCGATA
TGGGGGAGTCGGTGGTGTAGAAGCGATGGCAAGTGGCGGTCGGAACAGCA
GCAGAGCAGGAAGGGGTAGAACAGGGACCAAGCGGATATAAACGGTACTT
GTGGGCGGGGCGGCCAGTCGTTGGCTATTCCACAGCATGTTTGTCCCGAA
GTAGGCACGACTGCGAGCGCTCAAATTGTGCTCAGGCTGTCAAAACAGCG
TGCTTTGAAATGTGATGTCGGGGGTAAAGCGTGAGGCGAGGGAAGACCAC
AACGAGCAGTGGAGCGCCGTGGAGCGACCAGAGGCGTAGCGTGAGTATAT
TTCACCAGATGTACGGCACGGAGCTCGCCCGTGGCCATAAAGGGGCAGGT
ACACCAGACCTTGCGGCACTCGAGAGACAGCACCGAGAGGACGTGGCTTT
CAATCCCCCAACCTCACTCTGTCCGCTCTAGGCCCGGACTCATGTCGGGG
CGATGCCGGATTAAAATTGACCGTGGTCGCCTGACGCATGTATCACCCCT
CCTCGTCCTTGCACGTACCGTTACGGTTAACCAAACAGAGCAAGAAGAGA
AGACGGCAAGAAGAGCGTGCCAGCGGAGAGGGAGGCGACGAAGACGCAAG
AAACGGCGACGACAATGACGTGGCGGCGGCGGCGGCGGCGGCTATTGCTG
ATGCTGGCAAAATGGACATTGTTGTCACAAACGGTGGCAGTGGCGGCGGC
AGCAGCAGCAGTAGCAGCAGCAGCAGTGGAAGCGGCAGCGATAACGATGC
CGGCGAGGGAGTCGGGAGGAGGGATCGCGCTACCGATCCGCTTTAGAAGG
CGGTGGGGCTTTGAGGGGTGGCTGTTGGGGTGTCGTTAGTTGCTTCGCAC
AGAAAGACAGGGGCGTTTTTAGGAGGCGCTCCTTTTGGCTGCATGCTGAA
CCCAACGGGTGGCTCTGAGTAGCTACCCAGCTGGCTTGGAGCGTTAAATC
ACGCGCCGAGCTGATCCGGTGTATCCCCGTCACCATCCTCGTCAGATGCA
GACACCCCCCCCCCGCCCGGCAAAGAGTATTTTCTCGACGCCGGAAGTCG
GGTTCCTCGTTCTCGAGGCGTCTGGTACAGCACTCACTTGGGAATTTGCG
GTCCGCCTTCATGAGGTGTAAAACAGACGGCTTGAGCGTGCAGAAACTAG
GCGAGCACATGGAATGCGCGCCAACCCTGTATGCAGTGGGGTGGATTGGG
TGGAGATACTGAAGTGTTCAGTTAGGAGACAAATGAGTATGGGCAAATCG
ATATGTGTTGTGTTTTGTTCTCCCAGCTCTCCGATGAGGGGTAACGGGGC
GCGTGGCCG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8077:2007..5315- >mRNA_E_fasciculatus_S2_contig8077.16233.1 ID=mRNA_E_fasciculatus_S2_contig8077.16233.1|Name=mRNA_E_fasciculatus_S2_contig8077.16233.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=936bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8077:2007..5315- (Ectocarpus fasciculatus EfasUO2)
ATGTCTCAGTGCCCTCACTGCTTCGTGGGGCAGTGCCAGAGGCACAAGCT
GCAGGACCACGGCAAGCGGGAGCTTCTCCTGAAGTCCAAGATGGTTGACC
CTAAGGCCGCCCAGAAGAGGCTGTTCGACCGCGTCGTGACAGCGCAACTC
GACAAGCTGGAGGCCGCGGCGCGAGGCGCCAACGCAGGAGACCAGCAGGA
CGTCTACAAAGCAAGCGTGTCCAAGGCGCGCGACCGCGCCGAGCGACGGG
GGAACAAGCTCTCCAGCAAGCAGCAGCGGCAAGCGGCCAAGTCTAGGCTG
GGCGGGCACCTCGTCCACACCATGCTAGACAGCGACGATGACGGTAACGA
CTCCGATTCCGACGACGGGAAAGGGCGAACCAAAGGCGGCAGAAAGAGCA
AGGACAAGAAGCGCAAGAGCCGCAAGGACAAGAAGCGGAAGCGCAGGGGG
AGCGGCGACGAGGGGGGCAGCTCGAGCGGGAGCGATAGCAGCGACAGCGA
GGAGGAGAGCAGAGCCGACCGGAAGAGGCGCAGGAAGGACAGGAAAAAGG
ACCGCCGGCATCGCGGTGGCGGCAGCAGTAACGGCAAGGAAAAATCCTCG
TCCGACAGGAAGAAGGATAAGTCGGAAAGGAAGGAGAGGAAGAAGGAGCG
CAAGGAGCGACGCCGGAGCGAGAAGAAGAGCAAGAAGAGAAGACGGCAAG
AAGAGCGTGCCAGCGGAGAGGGAGGCGACGAAGACGCAAGAAACGGCGAC
GACAATGACGTGGCGGCGGCGGCGGCGGCGGCTATTGCTGATGCTGGCAA
AATGGACATTGTTGTCACAAACGGTGGCAGTGGCGGCGGCAGCAGCAGCA
GTAGCAGCAGCAGCAGTGGAAGCGGCAGCGATAACGATGCCGGCGAGGGA
GTCGGGAGGAGGGATCGCGCTACCGATCCGCTTTAG back to top
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