mRNA_E_fasciculatus_S2_contig8075.16230.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8075.16230.1
Unique NamemRNA_E_fasciculatus_S2_contig8075.16230.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Acetyltransferase (1-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU9_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.690e-26
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AAE VDSARMLDKADRYMNSKATKYL RAGQI KAEQTIAIFTRHEGDP+HNLFEM C
Sbjct:  500 AAEAVDSARMLDKADRYMNSKATKYLLRAGQIPKAEQTIAIFTRHEGDPQHNLFEMQC 557
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW59_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.870e-18
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AAE VD AR +D ADRY+N+KATKYL RA ++ +AE TIA+FTRHEGDP++NLFEM C
Sbjct:  475 AAEVVDFARKIDLADRYINNKATKYLLRADRVEQAEGTIALFTRHEGDPQYNLFEMQC 532
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD03_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.910e-18
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AAE +D AR +D ADRY+N+KATKYL RA ++ +AE TIA+FTRHEGDP+ NL+EM C
Sbjct:  477 AAEVIDFARRIDLADRYVNNKATKYLLRADRVEQAESTIALFTRHEGDPQFNLYEMQC 534
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: N-terminal (acetyltransferase A complex subunit nat1-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z070_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.270e-17
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA  VD  R LD ADRY+N+K TKYL RA +I++AE TIA+FTRHEGDP+ NLFEM C
Sbjct:  441 AATVVDQGRKLDLADRYINNKTTKYLLRANRIAEAEATIALFTRHEGDPQQNLFEMQC 498
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6VZ78_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.840e-17
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA  VD  R LD ADRY+N+K TKYL RA +I++AE TIA+FTRHEGDP+ NL++M C
Sbjct:  190 AATVVDQGRQLDLADRYINNKTTKYLLRANRIAQAEDTIALFTRHEGDPQQNLYDMQC 247
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5I2_SAPPC)

HSP 1 Score: 83.2 bits (204), Expect = 3.100e-17
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA  VD  R LD ADRY+N+KATKY  RA +I++AE TIA+FTRHEGDP+ NLFEM C
Sbjct:  426 AATIVDEGRKLDLADRYINNKATKYFLRANRIAEAEATIALFTRHEGDPQQNLFEMQC 483
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFA6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.780e-17
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA  VD  R LD ADRY+N+KATKY  RA +I++AE TIA+FTRHEGDP+ NLF+M C
Sbjct:  427 AATIVDQGRQLDLADRYINNKATKYFLRADRITEAENTIALFTRHEGDPQQNLFDMQC 484
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BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Acetyltransferase (1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.780e-17
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA+ +D+AR LD +DRY+N+K TKY+ RA ++ +AE+TIA+FTRHEGDP +NLFEM C
Sbjct:  453 AADAMDAARQLDLSDRYINNKTTKYMLRADRVPEAERTIALFTRHEGDPMYNLFEMQC 510
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VQ36_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.330e-17
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA  VD  R LD ADRY+N+K TKYL RA +I++AE TIA+FTRHEGDP+ NL++M C
Sbjct:   57 AATVVDQGRQLDLADRYINNKTTKYLLRANRIAQAEDTIALFTRHEGDPQQNLYDMQC 114
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DEU0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.750e-17
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 AAETVDSARMLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*C 175
            AA  VD  R LD ADRY+N+K TKYL RA +I++AE TIA+FTRHEGDP+ NL++M C
Sbjct:  421 AATVVDQGRQLDLADRYINNKTTKYLLRANRIAQAEDTIALFTRHEGDPQQNLYDMQC 478
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8075.16230.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Acetyltransferase2.690e-2691.381-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU9_... [more]
Hypothetical1.870e-1868.97protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical8.910e-1865.52protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
N-terminal2.270e-1767.24acetyltransferase A complex subunit nat1-like prot... [more]
Uncharacterized2.840e-1763.79protein (Fragment) n=2 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.100e-1767.24protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Uncharacterized5.780e-1765.52protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Acetyltransferase5.780e-1762.071-like protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Uncharacterized7.330e-1763.79protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized7.750e-1763.79protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8075contigE_fasciculatus_S2_contig8075:4252..4930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.0
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D8LSU9
Preferred nameNAA16
Model size177
KEGG koko:K20792
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG1156@1,KOG1156@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.1851735-UTR-E_fasciculatus_S2_contig8075:4251..42561696842468.1851735-UTR-E_fasciculatus_S2_contig8075:4251..4256Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8075 4252..4256 -
1696842468.2194595-UTR-E_fasciculatus_S2_contig8075:4902..49301696842468.2194595-UTR-E_fasciculatus_S2_contig8075:4902..4930Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8075 4903..4930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.1980844-CDS-E_fasciculatus_S2_contig8075:4256..43641696842468.1980844-CDS-E_fasciculatus_S2_contig8075:4256..4364Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8075 4257..4364 -
1696842468.2086442-CDS-E_fasciculatus_S2_contig8075:4866..49021696842468.2086442-CDS-E_fasciculatus_S2_contig8075:4866..4902Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8075 4867..4902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8075.16230.1prot_E_fasciculatus_S2_contig8075.16230.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8075 4257..4902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8075.16230.1

>prot_E_fasciculatus_S2_contig8075.16230.1 ID=prot_E_fasciculatus_S2_contig8075.16230.1|Name=mRNA_E_fasciculatus_S2_contig8075.16230.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=48bp
MLDKADRYMNSKATKYLPRAGQISKAEQTIAIFTRHEGDPEHNLFEM*
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mRNA from alignment at E_fasciculatus_S2_contig8075:4252..4930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8075.16230.1 ID=mRNA_E_fasciculatus_S2_contig8075.16230.1|Name=mRNA_E_fasciculatus_S2_contig8075.16230.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=679bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8075:4252..4930- (Ectocarpus fasciculatus EfasUO2)
GGCAGCGGAGACGGTAGACTCGGCTAGGATGCTTGACAAGGCGGACCGCT
ACATGAACAGCAAGGTGCGGCGCAAGTTTACCGTCTTATGTACCTAGGGT
CGTTTCGTCCCGTGGGTGTTGTACGGTTCGTAGACGGAAGGCGTCCACGG
TATGGCGATGCGGCCGGTTGTTTGTCTCGTTTCTGTTGCTTTTGGGCTTG
GCGACTTTTGTTGTTTCGTCTGTTGGTTTCCCATGGGAGTGCGGCAACAA
GGCACTTCTCTCTCTGTCTCCCTGTGTGCGTGCATGTGTGTCTTTCTCTC
TCTATCACTCCCCTGCTGTCTCAGTTTTTCGCACAGCAAGTTTTGCTGTT
TGCGCGGTTGCCTCTCTTGTTTTCTTGCCCTCAGCACTTGTCACTGACGA
ACCGTTACCCCCGCACCCCACCGCAGGGATCGACCTGTTCGTCATTTCGA
CGCCCCGTTTTTGTTGCCGTTTCATGTCCCCCAGTTTCTTCCCGACCGCT
ATCCTCGGTTAACCACTGCCACCATCAATCCTTGACCTTTGTGCGGTCGT
CTTGGCGGCGCGACAGGCTACCAAGTACTTGCCGCGTGCCGGGCAGATCT
CGAAGGCGGAGCAGACGATCGCTATCTTCACGAGGCACGAGGGGGACCCG
GAGCACAACCTCTTCGAGATGTAGTGCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8075:4252..4930-

>mRNA_E_fasciculatus_S2_contig8075.16230.1 ID=mRNA_E_fasciculatus_S2_contig8075.16230.1|Name=mRNA_E_fasciculatus_S2_contig8075.16230.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=144bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8075:4252..4930- (Ectocarpus fasciculatus EfasUO2)
ATGCTTGACAAGGCGGACCGCTACATGAACAGCAAGGCTACCAAGTACTT
GCCGCGTGCCGGGCAGATCTCGAAGGCGGAGCAGACGATCGCTATCTTCA
CGAGGCACGAGGGGGACCCGGAGCACAACCTCTTCGAGATGTAG
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