mRNA_E_fasciculatus_S2_contig807.16228.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig807.16228.1
Unique NamemRNA_E_fasciculatus_S2_contig807.16228.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig807.16228.1 vs.
Match: Ankyrin (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI)

HSP 1 Score: 570 bits (1470), Expect = 8.190e-199
Identity = 394/447 (88.14%), Postives = 401/447 (89.71%), Query Frame = 2 
Query:  311 MVPPRNKQQSTTTGFDAFSQRSSCGRSSTSTCGVGDVILEFSTPGARSSIHFVDATAAAAXXXXXSCRGRPCGGSTINFGSNSSRGVPPPVLLRQQSAPASSTARPSAKAGVHTGKHHRRTSTP-LDGARLTLLGVSKALNTPVVDNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKASDLGTTALHNAGFTPLHVAARCGRLTALRALLDAGEAVDSPSTPAXXXXXXXXXXXXXXXXXXELLLRGADPSRRNKGGATPLDMGGPE-MSGKAKLAREAFEKKLAEGERVRLALTSAQRWQRKRGMVLVCETLRKRARAVLALVDDGKSDGGAAAGAKRGRLDRDXXXXXXXXXXCRRSLAGGPAATAVPAQGWLVAQLCVHADPALMKSVIEFL 1645
            MVPPRNKQQSTT GFD FSQRSSC RSSTSTCGVGDVILEF TPGARS I FVDAT AAA     SCRGRPCGG+T  +   SSR V PPVLLRQQSAPASSTARPSA+A V+TGKHHRRTSTP LDGARLTLLGVSKALNTPV DNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKASDLGTTALHNAGFTPLHVAARCGRLTALRALLDAGEAVDSPSTPAXXXXXXXXXXXXXXXXXXELLLRGADPSRRNK GATPLDMGGPE MSGKAKLAREAFEKKLAEGERVRLALTSAQRWQRKRGMVLVCETLRKRA AVLAL D G SDGGA AG  R RL+RD           RRSLAGG  A+AVP+QGWLVAQLCVHADPALMK VIEFL
Sbjct:    1 MVPPRNKQQSTTIGFDGFSQRSSCERSSTSTCGVGDVILEFCTPGARSPIDFVDATTAAAA----SCRGRPCGGNTTCYAHGSSRDVRPPVLLRQQSAPASSTARPSAEASVYTGKHHRRTSTPPLDGARLTLLGVSKALNTPVQDNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKASDLGTTALHNAGFTPLHVAARCGRLTALRALLDAGEAVDSPSTPAXXXXXXXXXXXXXXXXXXELLLRGADPSRRNKRGATPLDMGGPETMSGKAKLAREAFEKKLAEGERVRLALTSAQRWQRKRGMVLVCETLRKRANAVLALAD-GASDGGALAG--RERLERDHGDTKRRF---RRSLAGGSVASAVPSQGWLVAQLCVHADPALMKGVIEFL 437
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig807.16228.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ankyrin8.190e-19988.14n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig807contigE_fasciculatus_S2_contig807:19582..24121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score582.0
Seed ortholog evalue2.3e-163
Seed eggNOG ortholog2880.D7FII0
Model size1648
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-28_000350.1
Cds size1338
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig807.16228.1prot_E_fasciculatus_S2_contig807.16228.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig807 21066..24121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.0579233-UTR-E_fasciculatus_S2_contig807:19581..198661696842468.0579233-UTR-E_fasciculatus_S2_contig807:19581..19866Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig807 19582..19866 +
1696842468.0698717-UTR-E_fasciculatus_S2_contig807:21040..210651696842468.0698717-UTR-E_fasciculatus_S2_contig807:21040..21065Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig807 21041..21065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.0799587-CDS-E_fasciculatus_S2_contig807:21065..216021696842468.0799587-CDS-E_fasciculatus_S2_contig807:21065..21602Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig807 21066..21602 +
1696842468.0900254-CDS-E_fasciculatus_S2_contig807:21958..221411696842468.0900254-CDS-E_fasciculatus_S2_contig807:21958..22141Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig807 21959..22141 +
1696842468.101652-CDS-E_fasciculatus_S2_contig807:23458..236801696842468.101652-CDS-E_fasciculatus_S2_contig807:23458..23680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig807 23459..23680 +
1696842468.1099772-CDS-E_fasciculatus_S2_contig807:23725..241211696842468.1099772-CDS-E_fasciculatus_S2_contig807:23725..24121Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig807 23726..24121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig807.16228.1

>prot_E_fasciculatus_S2_contig807.16228.1 ID=prot_E_fasciculatus_S2_contig807.16228.1|Name=mRNA_E_fasciculatus_S2_contig807.16228.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=446bp
MVPPRNKQQSTTTGFDAFSQRSSCGRSSTSTCGVGDVILEFSTPGARSSI
HFVDATAAAATAAAASCRGRPCGGSTINFGSNSSRGVPPPVLLRQQSAPA
SSTARPSAKAGVHTGKHHRRTSTPLDGARLTLLGVSKALNTPVVDNWEVA
RALLESNTDLRTRNDRGMTPLHLACSTGEVDAAKVLLLAGADSHARDHRS
RCPLHMAALSGKSELVSSLLTCGADPNKASDLGTTALHNAGFTPLHVAAR
CGRLTALRALLDAGEAVDSPSTPAGTTPLHLAAGFSRLSCVEELLLRGAD
PSRRNKGGATPLDMGGPEMSGKAKLAREAFEKKLAEGERVRLALTSAQRW
QRKRGMVLVCETLRKRARAVLALVDDGKSDGGAAAGAKRGRLDRDDDDDD
SSKRRCRRSLAGGPAATAVPAQGWLVAQLCVHADPALMKSVIEFL*
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mRNA from alignment at E_fasciculatus_S2_contig807:19582..24121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig807.16228.1 ID=mRNA_E_fasciculatus_S2_contig807.16228.1|Name=mRNA_E_fasciculatus_S2_contig807.16228.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4540bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig807:19582..24121+ (Ectocarpus fasciculatus EfasUO2)
GGAAGCTGGAACCGAGGCGTGTCCCCCGACAAAACGCGAGCTAGACGCAG
CTTCCGGCTCTCTGCAAACGGCACTGACTCCACACCCTCCTGTCAACACA
CTTACCTTCTCCACCCAACGGCCGAACCGACCACGGATTGCAACGATCCC
GTGCACACCTTTTCGTAGGCTCTCTCTCTCTCCCAACCTGGTCCGCTTAG
GAGGGTGCTCGTATCACATCGGAGAAACAGAGAAGCAAAGCAGCAGCAGT
ACAAGGAGCTAGCTGAGAAACAACAGCAGATCAAGGTAAGAAAGGGGATC
GCGCTGCCTGCTCAGATTTGGTGGAAGTCCTACACCACAGCAGCACACTC
TGCTTATTGCTTATAGTGAGGCTCGCTCTCTCTCTCTCTCACTGCTGTAG
CACCCGGCGGCGATCGGTCATCCCGCCGACAGTCAATACTTTTCTTCCGC
ATCATCAGAGGTTTCGTCGGTCTTTGGTCTCCTCGATGAGGTCGCGTGCT
GTACTTTCGTACTACTACTGCTTGTAGAAGCTCTGCCTCGTGCGGTCTCT
CCATCTCCCTTCGTCTGCCGTTCTCTCTTCAAGGAATCCCCCCCCCTTGA
TGAGTCCACCTACAATATTGCTTCTGCTGAGTCCGCAAAAGGCCGGCCAA
ACAAGATCAGAGAGGATCGCTCTCGCCTGTTGACTCTCAGCATCTCATCA
AGCAGCCGCGTCAAAACTTCCTCTTGGAGTTGACCCACGACGTACATACA
TACTTCCTCCCCAACAATCGTTGAGAGCGGAGGTTCTCGGTGCACAAGGT
TCCGGTATCTGTGTATATAGTCTTAAGCATAGCTGTTTCGGCGCACACGG
GCCGCCGCCACTAGACTAAACTACTAAATATTGTATTACTGCTGTAACAT
ACGACGACTTGATGTCACGTAAGCATTTTTTTTCGAACCCGTCCACATAT
ATCGGATTTTGTGGCATGAAAATTGGTGCGATCAGCAGCAAGTCGTGGTC
CCTTCACCGTCCGCAGCAGCCTCTTTTCGAATCTATGCATGCACGGCACA
TCTCTTGTAGGCACATGCTGCCTGCCTAACGGGTTCCTGCTGTATGTAGT
CGGGAAAAAACGGAAGTGTAGTGCAGTCTACCACTGCTGTTTGTGCACTA
CAGCAGCAGCTGTAGGTGCCACTTTGGAACATGTTCGTCGCGTCAGCCGA
CGCGCGTCCGACCTTGGTTAGGATGGTTGTATGCATACCGTGGCCACTTT
AGCTCTCTCCATCTCTCTCCCTCGCTTGCCGCACACTCCCAAGCCAAACC
CACGGTGGATGATGCGCAGGGCTGATAATGTTCATCGACACACACGCAGC
AATTTATCGTGCCAATCCGCCCACGGGTCTGACCAAGCCGGTGCGCTCGT
ACTGCCTTGTCCGCTTTCCGTTTTCTCCGCTTAATTTCACCGCACTTGCT
TATCTATAGCCTCTTGAGCCGGCAGCACACAAGCATGGTGCCACCCAGGA
ACAAGCAGCAGAGCACCACCACCGGCTTCGACGCGTTCTCCCAGCGGTCC
TCTTGCGGGAGGTCGTCGACTTCGACATGCGGTGTGGGCGACGTGATTCT
AGAGTTTTCCACTCCCGGCGCTCGATCCTCGATACACTTCGTGGACGCAA
CGGCGGCGGCGGCGACGGCGGCGGCGGCATCCTGCCGCGGGAGGCCTTGC
GGCGGAAGCACCATCAACTTCGGCAGTAACAGTAGTAGAGGTGTGCCGCC
ACCGGTCCTGTTGCGGCAGCAGTCGGCGCCGGCATCGTCAACGGCACGAC
CATCAGCGAAGGCCGGCGTCCACACGGGCAAGCACCACCGCAGGACGTCG
ACGCCGCTGGACGGCGCGCGCCTGACGCTGCTGGGCGTGTCCAAGGCGCT
CAACACTCCCGTCGTAGACAACTGGGAGGTGGCCCGGGCGCTGCTGGAGT
CCAACACCGACCTCCGGACAAGAAACGACCGCGGGATGACTCCTCTGCAC
TTGGCATGTTCAACTGGAGAGGTGCGTAAAGTCTCAACACTTTTGATTGA
CCTCTGCTGTCCACTAGGAAGGACAATACTGCAAAATGGTGTCGGGGATC
CCACGTGGGTGTGCTCTGGATGGTCCTAGGAGTAGGTGGCGCTCATCGGC
GCCGCTTTTGTTGTCACGCCGCTGTACTCGGGTTGCGTGTCGTTCGGATA
TACATACCCGCATCCGTCAACTTGTCGGACAATGGAAATCTCCAACACAT
GTCTCTCCTTGTGGCACATGTTGTTGAGCCCAAGGACCCGCAGCCAGCTG
CAGCAGTATGTTGGAAGTGATCTAACGCAGCATCTCCCCGGGATTGTCAC
TGCTGTTGGGTGCCGCAATCCTCTCAGGTGGACGCGGCGAAGGTGCTGCT
TCTCGCCGGCGCGGACTCCCACGCGAGGGACCACAGGTCTCGGTGCCCGC
TGCACATGGCGGCCTTGTCGGGAAAGTCGGAGCTGGTGTCCTCCCTGCTC
ACGTGCGGTGCGGACCCCAACAAGGCGTCCGACCTCGGCACGACGGCGCT
CCACAACGCGGTAAGTTTTCTGAGCGGTTGTATCTATCGATCGGCCGGCC
GTGGGGCCGACACACAACGCCACCACGCGACGAGCAATGGGATGTAGGCA
TGCATGCACGCACAATCGGTCCATGGGTATTTCCGCCCCCCCCCGCAATG
CCCCGGGTAATGCTCTTGTGCAATCACCCGTTTATCCGACGATTTGGTAT
TTGAAGTCCAGCTCATACATGCACGAACAGGAAGCAAGCAAAGGAGCAGC
ATTCGTACCCGCACCACGTACAAGCACCGATCGATACAGAGGATCAAGCA
CTTGGTGGAACATCGGAGGTTTAGTCTGCGCCTTTCGTCTTTGACGCCCC
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTT
TTTTGGGGGTGTTTGGGGGGGGGGGGGGCGCCTCGGGGGGGGCTTGGGGG
GGGNNNNNNNNNNTTTTTTAATTATACCGCCCCCCCCCAAATCTCCACCC
TTTCCCCCCCCCCCCCTCTTCCCATTTGGTTTAGTCTGCCCCTTTCTTCT
TTGACGCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCCCCGCCGCATTCCA
TCGATTTTTCTGCAGGCGTTGCTGGGACGGGTGGAAGCGTCTCGGGCGCT
GCTTGTGGCGGGTGCGGACCCGAATGCGATCGACCACAACTCTTTCTCGC
CGCTCTACCTGGCGTCGCAGAACGGACACACACAGCTCGTGCTCGACCTG
CTCGCCGCCGGTGCAGACACGAGTGTCAAGACCAGCAGGGTGAGACATAG
ATCCGGGATATAACGGATCAGAAGGGATTGAGTAAATGGAGCCGGGCCGG
TTGCAATGGAAACATGCACGGGGTGTCTTTTTGAAGAAGGTGTTTGGAGG
TATGCAGATCGACGCGACGATGTTTACCCGAGCTCGGCGCTATCGGAGCC
ATCAGGGATGCATCTCTTGTGTTCGGAGACGTTGGTATTTCGTGGCACGT
GAAGCACACACGCCCTCATGTGGGTGTGTCCAGGACAGTCCAGGAAAACG
TTTTCCCGCAACACCTCATCTAACTCACCTCACGCAAGAGACTGATGCTA
CCCCCCCCCCCCCCCCCCCCCCCTCCCCTTCTTTTTTTTTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTCCTTTTTCCTTTCGCGCCGGTGGTCGGCGNN
NNNNNNNNCCAGGAAAACGTTTTCCCCCACCCCCTCATCTAACCCCCCTC
CCGCAAGAGACTGTTGCTACCCCCCCCCCCCCTCCCCCCTACGCTTGTGT
TTTTTTCGCCTCTGCTTTTGTTTGCAGGGCTTCACTCCCTTGCACGTGGC
GGCAAGGTGCGGGCGCTTGACGGCCCTGAGGGCCCTCCTGGACGCCGGCG
AGGCCGTGGACTCCCCGTCCACCCCCGCGGGTACCACCCCCCTCCACCTC
GCGGCCGGGTTCTCGCGGCTGAGCTGCGTGGAGGAGCTCCTCCTGCGTGG
CGCCGACCCTTCGAGGAGGAACAAGGGAGGCGCGACGCCGCTGGACATGG
TGGGCACCCTCGTCATTCCCGTCAGCGCCCGCCCCGCCACCCAGGGCGGG
CCCGAGATGAGCGGCAAGGCCAAGCTCGCCCGGGAGGCGTTCGAAAAGAA
GCTGGCGGAAGGGGAGCGGGTGAGGCTCGCCCTGACGAGCGCGCAGAGGT
GGCAGAGGAAACGGGGCATGGTGCTGGTGTGCGAGACTCTCCGCAAGAGG
GCTCGCGCCGTCCTGGCGCTTGTTGACGATGGCAAATCCGACGGGGGTGC
GGCGGCCGGGGCAAAGAGGGGAAGGCTCGACCGGGACGACGACGACGACG
ACAGCAGCAAGCGCCGCTGTAGGCGTTCGCTAGCTGGCGGGCCGGCGGCA
ACGGCCGTCCCTGCCCAGGGGTGGTTGGTCGCGCAGCTGTGCGTGCATGC
GGACCCCGCGTTGATGAAGAGCGTGATTGAGTTTTTGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig807:19582..24121+

>mRNA_E_fasciculatus_S2_contig807.16228.1 ID=mRNA_E_fasciculatus_S2_contig807.16228.1|Name=mRNA_E_fasciculatus_S2_contig807.16228.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1338bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig807:19582..24121+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGCCACCCAGGAACAAGCAGCAGAGCACCACCACCGGCTTCGACGC
GTTCTCCCAGCGGTCCTCTTGCGGGAGGTCGTCGACTTCGACATGCGGTG
TGGGCGACGTGATTCTAGAGTTTTCCACTCCCGGCGCTCGATCCTCGATA
CACTTCGTGGACGCAACGGCGGCGGCGGCGACGGCGGCGGCGGCATCCTG
CCGCGGGAGGCCTTGCGGCGGAAGCACCATCAACTTCGGCAGTAACAGTA
GTAGAGGTGTGCCGCCACCGGTCCTGTTGCGGCAGCAGTCGGCGCCGGCA
TCGTCAACGGCACGACCATCAGCGAAGGCCGGCGTCCACACGGGCAAGCA
CCACCGCAGGACGTCGACGCCGCTGGACGGCGCGCGCCTGACGCTGCTGG
GCGTGTCCAAGGCGCTCAACACTCCCGTCGTAGACAACTGGGAGGTGGCC
CGGGCGCTGCTGGAGTCCAACACCGACCTCCGGACAAGAAACGACCGCGG
GATGACTCCTCTGCACTTGGCATGTTCAACTGGAGAGGTGGACGCGGCGA
AGGTGCTGCTTCTCGCCGGCGCGGACTCCCACGCGAGGGACCACAGGTCT
CGGTGCCCGCTGCACATGGCGGCCTTGTCGGGAAAGTCGGAGCTGGTGTC
CTCCCTGCTCACGTGCGGTGCGGACCCCAACAAGGCGTCCGACCTCGGCA
CGACGGCGCTCCACAACGCGGGCTTCACTCCCTTGCACGTGGCGGCAAGG
TGCGGGCGCTTGACGGCCCTGAGGGCCCTCCTGGACGCCGGCGAGGCCGT
GGACTCCCCGTCCACCCCCGCGGGTACCACCCCCCTCCACCTCGCGGCCG
GGTTCTCGCGGCTGAGCTGCGTGGAGGAGCTCCTCCTGCGTGGCGCCGAC
CCTTCGAGGAGGAACAAGGGAGGCGCGACGCCGCTGGACATGGGCGGGCC
CGAGATGAGCGGCAAGGCCAAGCTCGCCCGGGAGGCGTTCGAAAAGAAGC
TGGCGGAAGGGGAGCGGGTGAGGCTCGCCCTGACGAGCGCGCAGAGGTGG
CAGAGGAAACGGGGCATGGTGCTGGTGTGCGAGACTCTCCGCAAGAGGGC
TCGCGCCGTCCTGGCGCTTGTTGACGATGGCAAATCCGACGGGGGTGCGG
CGGCCGGGGCAAAGAGGGGAAGGCTCGACCGGGACGACGACGACGACGAC
AGCAGCAAGCGCCGCTGTAGGCGTTCGCTAGCTGGCGGGCCGGCGGCAAC
GGCCGTCCCTGCCCAGGGGTGGTTGGTCGCGCAGCTGTGCGTGCATGCGG
ACCCCGCGTTGATGAAGAGCGTGATTGAGTTTTTGTGA
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