mRNA_E_fasciculatus_S2_contig8067.16224.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8067.16224.1
Unique Name	mRNA_E_fasciculatus_S2_contig8067.16224.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: UDENN (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L446_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.700e-19
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANKAS 162
            F+WEGVFVPVVP+ LMDVLDSPVPALVGVQAP D L  A+DGVAVLDLDAN AS
Sbjct:  727 FKWEGVFVPVVPLALMDVLDSPVPALVGVQAPLDPLSSAADGVAVLDLDANNAS 780

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: DDENN (domain-containing protein n=5 Tax=Paracoccidioides TaxID=38946 RepID=C1H0R7_PARBA)

HSP 1 Score: 55.8 bits (133), Expect = 2.300e-7
Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANKASVRVRVTLPTAFPKFFSR 213
            FQW GVF+P++P  L+ VL++P P +VG++  +++    SD   ++DLD N+     R   PT  P+   R
Sbjct:  559 FQWTGVFIPILPARLIQVLEAPCPYIVGIERRYEKAELPSDDFVLVDLDQNEIESTAR---PTPLPRHHRR 626

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gomphillus americanus TaxID=1940652 RepID=A0A8H3F004_9LECA)

HSP 1 Score: 52.4 bits (124), Expect = 3.840e-6
Identity = 24/67 (35.82%), Postives = 41/67 (61.19%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANKASVRVRVTLPTAFPK 201
            F W GVF+PV+P  L+ VL++P P +VG++  +D +   SD   ++DLD+++       + P+  PK
Sbjct:  546 FTWSGVFIPVLPARLIQVLEAPCPYIVGIERRYDNIELPSDDFVLVDLDSDEIE---STSAPSYLPK 609

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8X3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.520e-5
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1

Query:    7 WEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANK 156
            W+G ++PV+P +L+DV+D+PVP LVGV A +      S  V  +DLD N+
Sbjct:  426 WQGAYIPVLPSSLLDVIDAPVPFLVGVHAKYLATANRSSDVFFIDLDHNR 475

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z028_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.440e-5
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANK 156
            F W+G ++PV+P +L+DV+D+PVP LVGV + +       + V  +DLD N+
Sbjct:  418 FAWQGAYIPVLPSSLLDVIDAPVPFLVGVHSKYLATASRCNDVYFIDLDHNR 469

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDD8_PYTOL)

HSP 1 Score: 49.7 bits (117), Expect = 3.460e-5
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAP-FDRLGYASDGVAVLDLDANK 156
            F W+G ++PV+P +L+DV+D+PVP LVG+ A    +    + GV  +DLD N+
Sbjct:  515 FSWQGAYIPVLPSSLLDVIDAPVPFLVGMHADCMKQAASQTSGVVFVDLDHNR 567

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: UDENN (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNF6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.680e-5
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFD 102
            F+W+GVF+P++P  L D+L SPVP ++GVQ PFD
Sbjct:  561 FKWDGVFIPLLPTALSDILQSPVPFVLGVQPPFD 594

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Y6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.730e-5
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1

Query:    1 FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYA-SDGVAVLDLDANK 156
            + W+G ++PV+P +L+DV+D+PVP LVG  +   +L  A + GV  +DLD N+
Sbjct:  504 YSWQGAYIPVLPSSLLDVIDAPVPFLVGAHSDCLKLAAARTSGVVFVDLDHNR 556

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BQ30_SAPPC)

HSP 1 Score: 48.9 bits (115), Expect = 6.350e-5
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1

Query:    7 WEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANKA-SVRVRVTLPTAFPKFFSR 213
            W+G ++PV+P +L+DV+D+PVP LVGV + +      S  V  +DLD N+    R    + T  PK   R
Sbjct:  427 WQGAYIPVLPSSLLDVIDAPVPFLVGVHSKYLATASRSTDVFFIDLDHNRVIPPRNEDGIETVLPKMPER 496

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BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QZ44_SAPDV)

HSP 1 Score: 48.5 bits (114), Expect = 8.840e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1

Query:    7 WEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDANK 156
            W+G ++PV+P +L+DV+D+PVP LVGV + +      S  V  +DLD N+
Sbjct:  428 WQGAYIPVLPSSLLDVIDAPVPFLVGVHSKYLATASRSTDVFFIDLDHNR 477

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8067.16224.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
UDENN	3.700e-19	83.33	domain-containing protein n=2 Tax=Ectocarpus TaxID...	[more]
DDENN	2.300e-7	36.62	domain-containing protein n=5 Tax=Paracoccidioides...	[more]
Uncharacterized	3.840e-6	35.82	protein n=1 Tax=Gomphillus americanus TaxID=194065...	[more]
Uncharacterized	2.520e-5	46.00	protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI...	[more]
Uncharacterized	3.440e-5	42.31	protein n=1 Tax=Thraustotheca clavata TaxID=74557 ...	[more]
Uncharacterized	3.460e-5	43.40	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]
UDENN	4.680e-5	58.82	domain-containing protein n=2 Tax=Monodopsidaceae ...	[more]
Uncharacterized	4.730e-5	43.40	protein n=1 Tax=Pythium brassicum TaxID=1485010 Re...	[more]
Uncharacterized	6.350e-5	38.57	protein n=1 Tax=Saprolegnia parasitica (strain CBS...	[more]
Uncharacterized	8.840e-5	44.00	protein n=1 Tax=Saprolegnia diclina (strain VS20) ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8067	contig	E_fasciculatus_S2_contig8067:6342..6554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	96.7
Seed ortholog evalue	4.7e-18
Seed eggNOG ortholog	2880.D7FZZ2
Model size	213
KEGG ko	ko:K20161
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	Rab guanyl-nucleotide exchange factor activity
EggNOG OGs	KOG3569@1,KOG3569@2759
Cds size	213
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842467.5729709-CDS-E_fasciculatus_S2_contig8067:6341..6554	1696842467.5729709-CDS-E_fasciculatus_S2_contig8067:6341..6554	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8067 6342..6554 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8067.16224.1	prot_E_fasciculatus_S2_contig8067.16224.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8067 6342..6554 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8067:6342..6554-
coding sequence from alignment at E_fasciculatus_S2_contig8067:6342..6554-

protein sequence of mRNA_E_fasciculatus_S2_contig8067.16224.1

>prot_E_fasciculatus_S2_contig8067.16224.1 ID=prot_E_fasciculatus_S2_contig8067.16224.1|Name=mRNA_E_fasciculatus_S2_contig8067.16224.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=71bp
FQWEGVFVPVVPVTLMDVLDSPVPALVGVQAPFDRLGYASDGVAVLDLDA
NKASVRVRVTLPTAFPKFFSR

mRNA from alignment at E_fasciculatus_S2_contig8067:6342..6554-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8067.16224.1 ID=mRNA_E_fasciculatus_S2_contig8067.16224.1|Name=mRNA_E_fasciculatus_S2_contig8067.16224.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8067:6342..6554- (Ectocarpus fasciculatus EfasUO2)
TTCCAGTGGGAAGGCGTGTTCGTTCCCGTGGTGCCGGTGACGCTAATGGA
CGTGCTCGACAGTCCCGTGCCTGCGCTGGTCGGGGTCCAGGCGCCCTTCG
ACCGTCTCGGCTACGCCTCCGACGGCGTGGCGGTGCTCGATCTGGACGCT
AACAAGGCTTCGGTAAGGGTAAGGGTAACTTTGCCTACAGCATTCCCGAA
GTTTTTTTCCCGC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8067:6342..6554-

>mRNA_E_fasciculatus_S2_contig8067.16224.1 ID=mRNA_E_fasciculatus_S2_contig8067.16224.1|Name=mRNA_E_fasciculatus_S2_contig8067.16224.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8067:6342..6554- (Ectocarpus fasciculatus EfasUO2)
TTCCAGTGGGAAGGCGTGTTCGTTCCCGTGGTGCCGGTGACGCTAATGGA
CGTGCTCGACAGTCCCGTGCCTGCGCTGGTCGGGGTCCAGGCGCCCTTCG
ACCGTCTCGGCTACGCCTCCGACGGCGTGGCGGTGCTCGATCTGGACGCT
AACAAGGCTTCGGTAAGGGTAAGGGTAACTTTGCCTACAGCATTCCCGAA
GTTTTTTTCCCGC